add check on both variance_only and fill_cov_with_var #1095

	name: Automated tests & code coverage

	on: [push, pull_request]

	jobs:
	build:

	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.9", "3.10", "3.11"]
	os: [ubuntu-latest]

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -e ".[develop]"
	- uses: pre-commit/[email protected]
	- name: Run tests
	run: \|
	# -rA displays the captured output for all tests after they're run
	# See the docs: https://doc.pytest.org/en/latest/reference/reference.html#command-line-flags
	pytest -rA tests/
	- name: Run coverage
	if: matrix.os == 'ubuntu-latest'
	run: \|
	pip install pytest pytest-cov
	coverage run -m pytest tests/


	- name: Ruff
	uses: chartboost/ruff-action@v1

	# - name: Upload coverage to coveralls
	# if: matrix.os == 'ubuntu-latest'
	# uses: coverallsapp/github-action@v2
	# with:
	# github-token: ${{ secrets.GITHUB_TOKEN }}

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