From 16ed212e28e69e58b10e3b94ce77e60f400c6578 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 10:57:55 -0500 Subject: [PATCH 01/20] install gcs with nwm client by default --- python/nwm_client/setup.cfg | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/python/nwm_client/setup.cfg b/python/nwm_client/setup.cfg index 1c7739f8..f2bf239b 100644 --- a/python/nwm_client/setup.cfg +++ b/python/nwm_client/setup.cfg @@ -37,6 +37,7 @@ install_requires = hydrotools.caches>=0.1.2 beautifulsoup4 requests + google-cloud-storage python_requires = >=3.7 include_package_data = True @@ -46,5 +47,3 @@ where = src [options.extras_require] develop = pytest -gcp = - google-cloud-storage From 3b502450717a73d357fc471b4ef3f57887a7cbe3 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 10:59:07 -0500 Subject: [PATCH 02/20] remove gcp target instruction --- python/nwm_client/README.md | 3 --- 1 file changed, 3 deletions(-) diff --git a/python/nwm_client/README.md b/python/nwm_client/README.md index 71c7ccb3..c977eb51 100644 --- a/python/nwm_client/README.md +++ b/python/nwm_client/README.md @@ -18,9 +18,6 @@ $ python3 -m pip install --upgrade pip wheel # Install nwm_client $ python3 -m pip install hydrotools.nwm_client - -# Install nwm_client with gcp capabilities -$ python3 -m pip install "hydrotools.nwm_client[gcp]" ``` ## Usage From 11146ae26c414754530b45351a266b34601b03f3 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 10:59:57 -0500 Subject: [PATCH 03/20] bump nwm client to 5.1.3 --- python/nwm_client/src/hydrotools/nwm_client/_version.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/python/nwm_client/src/hydrotools/nwm_client/_version.py b/python/nwm_client/src/hydrotools/nwm_client/_version.py index 4682e613..36887081 100644 --- a/python/nwm_client/src/hydrotools/nwm_client/_version.py +++ b/python/nwm_client/src/hydrotools/nwm_client/_version.py @@ -1 +1 @@ -__version__ = "5.0.3" +__version__ = "5.1.3" From 3a30dece2d2f1097f5f9add946698c504ef6412d Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 11:01:49 -0500 Subject: [PATCH 04/20] add pint depends to nwm client --- python/nwm_client/setup.cfg | 1 + 1 file changed, 1 insertion(+) diff --git a/python/nwm_client/setup.cfg b/python/nwm_client/setup.cfg index f2bf239b..06f684b4 100644 --- a/python/nwm_client/setup.cfg +++ b/python/nwm_client/setup.cfg @@ -38,6 +38,7 @@ install_requires = beautifulsoup4 requests google-cloud-storage + pint python_requires = >=3.7 include_package_data = True From d42012be8f162efcb0d228c00c0bf3616a01d3f0 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 11:05:45 -0500 Subject: [PATCH 05/20] test unit conversion factor --- python/nwm_client/tests/test_units.py | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 python/nwm_client/tests/test_units.py diff --git a/python/nwm_client/tests/test_units.py b/python/nwm_client/tests/test_units.py new file mode 100644 index 00000000..2342a9f9 --- /dev/null +++ b/python/nwm_client/tests/test_units.py @@ -0,0 +1,11 @@ +import pytest +from hydrotools.nwm_client import measurement_units +import numpy as np + +def test_conversion_factor(): + f = measurement_units.conversion_factor( + from_units="m^3/s", + to_units="ft^3/s" + ) + + assert np.isclose(f, (0.3048 ** -3.0)) From 6a42341d24b3df4ea3e78b0edeed2a6bfb124ec8 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 13:12:24 -0500 Subject: [PATCH 06/20] test UnitHandler methods --- python/nwm_client/tests/test_units.py | 21 ++++++++++++++++++--- 1 file changed, 18 insertions(+), 3 deletions(-) diff --git a/python/nwm_client/tests/test_units.py b/python/nwm_client/tests/test_units.py index 2342a9f9..b5dd113e 100644 --- a/python/nwm_client/tests/test_units.py +++ b/python/nwm_client/tests/test_units.py @@ -1,11 +1,26 @@ import pytest -from hydrotools.nwm_client import measurement_units +from hydrotools.nwm_client import UnitHandler import numpy as np +import pandas as pd -def test_conversion_factor(): - f = measurement_units.conversion_factor( +@pytest.fixture +def setup_unit_handler(): + return UnitHandler.UnitHandler() + +def test_conversion_factor(setup_unit_handler): + f = setup_unit_handler.conversion_factor( from_units="m^3/s", to_units="ft^3/s" ) assert np.isclose(f, (0.3048 ** -3.0)) + +def test_convert_values(setup_unit_handler): + s = pd.Series([1, 1, 1]) + s = setup_unit_handler.convert_values( + value=s, + from_units="ft", + to_units="m" + ) + + assert (np.all(np.isclose(s, 0.3048))) From 16379e1348a604e552c77f3602ced031def06a75 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 13:12:39 -0500 Subject: [PATCH 07/20] add methods to convert units using pint --- .../src/hydrotools/nwm_client/UnitHandler.py | 70 +++++++++++++++++++ 1 file changed, 70 insertions(+) create mode 100644 python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py diff --git a/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py b/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py new file mode 100644 index 00000000..a07228ca --- /dev/null +++ b/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py @@ -0,0 +1,70 @@ +import pint +from dataclasses import dataclass +import numpy.typing as npt +import pandas as pd + +@dataclass +class UnitHandler: + """Engine to handle unit of measurement conversions. + + Attributes + ---------- + unit_registry: pint.UnitRegistry, default pint.UnitRegistry(cache_folder=":auto:") + pint.UnitRegistry that handles all units used by UnitHandler. + + """ + unit_registry: pint.UnitRegistry = pint.UnitRegistry(cache_folder=":auto:") + + def conversion_factor(self, from_units: str, to_units: str) -> float: + """Compute and return a conversion factor from from_units to + to_units. + + Parameters + ---------- + from_units: pint.UnitRegistry.Quantity compatible str + Units from which to convert (e.g. "m^3/s") + to_units: pint.UnitRegistry.Quantity compatible str + Desired conversion units (e.g. "ft^3/s") + + Returns + ------- + result: float + Conversion factor to transform from_units to to_units. + + Example + ------- + + """ + # Return conversion factor + return self.unit_registry.Quantity(1, from_units).to(to_units).magnitude + + def convert_values(self, value: npt.ArrayLike, from_units: str, to_units: str) -> npt.ArrayLike: + """Convert value from from_units to to_units. + + Parameters + ---------- + value: array-like, required + Values to convert. + from_units: pint.UnitRegistry.Quantity compatible str + Units from which to convert (e.g. "m^3/s") + to_units: pint.UnitRegistry.Quantity compatible str + Desired conversion units (e.g. "ft^3/s") + + Returns + ------- + result: array-like + Converted values same shape as value. + + Example + ------- + + """ + # Check for pandas.series + if isinstance(value, pd.Series): + return pd.Series( + data=self.unit_registry.Quantity(value.values, from_units).to(to_units).magnitude, + index=value.index + ) + + # Return converted value + return self.unit_registry.Quantity(value, from_units).to(to_units).magnitude From 6066c0f4993242d58343ac1858157839f695e25e Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 13:14:28 -0500 Subject: [PATCH 08/20] remove gcp specific stuff --- python/nwm_client/src/hydrotools/nwm_client/gcp.py | 9 --------- 1 file changed, 9 deletions(-) diff --git a/python/nwm_client/src/hydrotools/nwm_client/gcp.py b/python/nwm_client/src/hydrotools/nwm_client/gcp.py index d64bafe1..343c7e2f 100644 --- a/python/nwm_client/src/hydrotools/nwm_client/gcp.py +++ b/python/nwm_client/src/hydrotools/nwm_client/gcp.py @@ -14,17 +14,8 @@ """ -from pandas.core.indexing import convert_from_missing_indexer_tuple from hydrotools.caches.hdf import HDFCache -try: - from google.cloud import storage -except ImportError as e: - error_message = ("Unable to import google-cloud-storage. Reinstall `hydrotools.nwm_client` using the extra-requirement, `gcp`." - "\n" - "`pip install 'hydrotools.nwm_client[gcp]'") - raise ImportError(error_message) from e - from io import BytesIO import xarray as xr import warnings From b389fdc1a500e54da31043f8b02ccec55a3e3f06 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 13:22:48 -0500 Subject: [PATCH 09/20] restore import --- python/nwm_client/src/hydrotools/nwm_client/gcp.py | 1 + 1 file changed, 1 insertion(+) diff --git a/python/nwm_client/src/hydrotools/nwm_client/gcp.py b/python/nwm_client/src/hydrotools/nwm_client/gcp.py index 343c7e2f..74c966b8 100644 --- a/python/nwm_client/src/hydrotools/nwm_client/gcp.py +++ b/python/nwm_client/src/hydrotools/nwm_client/gcp.py @@ -15,6 +15,7 @@ """ from hydrotools.caches.hdf import HDFCache +from google.cloud import storage from io import BytesIO import xarray as xr From 2b6e7ad4eb20f494c3290497ffaf26a620a54eb6 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 13:49:55 -0500 Subject: [PATCH 10/20] add unit of measure handling --- .../src/hydrotools/nwm_client/gcp.py | 39 ++++++++++++++++--- 1 file changed, 33 insertions(+), 6 deletions(-) diff --git a/python/nwm_client/src/hydrotools/nwm_client/gcp.py b/python/nwm_client/src/hydrotools/nwm_client/gcp.py index 74c966b8..1d39c8b5 100644 --- a/python/nwm_client/src/hydrotools/nwm_client/gcp.py +++ b/python/nwm_client/src/hydrotools/nwm_client/gcp.py @@ -28,6 +28,7 @@ import numpy.typing as npt from pathlib import Path from collections.abc import Iterable +from . import UnitHandler # Global singletons for holding location and df/None of NWM feature id to usgs site # code mapping @@ -51,7 +52,8 @@ def __init__( *, location_metadata_mapping: pd.DataFrame = None, cache_path: Union[str, Path] = "nwm_client.h5", - cache_group: str = 'nwm_client' + cache_group: str = 'nwm_client', + unit_system: str = "SI" ): """Instantiate NWM Data Service. @@ -75,6 +77,9 @@ def __init__( Structure defaults to storing pandas.DataFrames in PyTable format. Individual DataFrames can be accessed directly using key patterns that look like '/{cache_group}/{configuration}/DT{reference_time}' + unit_system: str, optional, default 'SI' + The default measurement_unit for NWM streamflow data are cubic meter per second. + Setting this option to "US" will convert the units to cubic foot per second. Returns ------- @@ -119,6 +124,17 @@ def __init__( self._cache_path = Path(cache_path) self._cache_group = cache_group + # Validate system of units + if unit_system not in self.valid_unit_systems: + message = f'Invalid unit system "{unit_system}". Must select from {str(self.valid_unit_systems)}' + raise ValueError(message) + + # Set default unit registry + if unit_system == "US": + self._unit_handler = UnitHandler.UnitHandler() + else: + self._unit_handler = None + # TODO find publicly available authoritative source of service # compatible valid model configuration strings def list_blobs( @@ -430,7 +446,7 @@ def get( ... ) """ - # Return with caching + # Retrieve from cache if cache_data: key = f"/{self.cache_group}/{configuration}/DT{reference_time}" with HDFCache( @@ -439,15 +455,22 @@ def get( complib='zlib', fletch32=True ) as cache: - return cache.get( + df = cache.get( self.get_cycle, key, configuration=configuration, reference_time=reference_time ) - - # Return without caching - return self.get_cycle(configuration, reference_time) + else: + # Retrieve without caching + df = self.get_cycle(configuration, reference_time) + + # Convert units + if self._unit_handler: + u = UnitHandler.UnitHandler() + df.loc[:, "value"] = u.convert_values(df["value"], "m^3/s", "ft^3/s") + df["measurement_unit"] = "ft^3/s" + return df @property def bucket_name(self) -> str: @@ -524,3 +547,7 @@ def configurations(self) -> list: 'short_range_hawaii_no_da', 'short_range_puertorico_no_da' ] + + @property + def valid_unit_systems(self) -> list: + return ['SI', 'US'] From 05408f90efa274df6ea32fe31ace84f9449f52dd Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 13:53:25 -0500 Subject: [PATCH 11/20] test default unit handler --- python/nwm_client/tests/test_gcp.py | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/python/nwm_client/tests/test_gcp.py b/python/nwm_client/tests/test_gcp.py index e138480d..7e609143 100644 --- a/python/nwm_client/tests/test_gcp.py +++ b/python/nwm_client/tests/test_gcp.py @@ -8,6 +8,14 @@ def setup_gcp(): return gcp.NWMDataService() +@pytest.fixture +def setup_gcp_US(): + return gcp.NWMDataService(unit_system="US") + +def test_unit_systems(setup_gcp, setup_gcp_US): + assert (setup_gcp._unit_handler) == None + assert (setup_gcp_US._unit_handler) != None + def test_bucket_name(setup_gcp): assert (setup_gcp.bucket_name) == "national-water-model" From 30519cfa7d06f148bd66be2649c73a32e6272d34 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 13:54:57 -0500 Subject: [PATCH 12/20] remove commented tests --- python/nwm_client/tests/test_gcp.py | 65 +---------------------------- 1 file changed, 1 insertion(+), 64 deletions(-) diff --git a/python/nwm_client/tests/test_gcp.py b/python/nwm_client/tests/test_gcp.py index 7e609143..85a6f0f7 100644 --- a/python/nwm_client/tests/test_gcp.py +++ b/python/nwm_client/tests/test_gcp.py @@ -154,74 +154,11 @@ def test_get(setup_gcp): ) assert df['value_time'].unique().size == 3 - # # Test Ext. ANA - # df = setup_gcp.get( - # configuration="analysis_assim_extend", - # reference_time="20210101T16Z" - # ) - # assert df['value_time'].unique().size == 28 - - # # Test short range - # df = setup_gcp.get( - # configuration="short_range", - # reference_time="20210101T01Z" - # ) - # assert df['value_time'].unique().size == 18 - - # # Test medium range - # df = setup_gcp.get( - # configuration="medium_range_mem1", - # reference_time="20210101T06Z" - # ) - # assert df['value_time'].unique().size == 80 - - # # Test long range - # df = setup_gcp.get( - # configuration="long_range_mem1", - # reference_time="20210101T06Z" - # ) - # assert df['value_time'].unique().size == 120 - - # # Test Hawaii ANA - # df = setup_gcp.get( - # configuration="analysis_assim_hawaii", - # reference_time="20210101T01Z" - # ) - # assert df['value_time'].unique().size == 3 - - # # Test Hawaii Short Range - # df = setup_gcp.get( - # configuration="short_range_hawaii", - # reference_time="20210101T00Z" - # ) - # assert df['value_time'].unique().size == 60 - - # # Test Puerto Rico ANA - # df = setup_gcp.get( - # configuration="analysis_assim_puertorico", - # reference_time="20210501T00Z" - # ) - # assert df['value_time'].unique().size == 3 - - # # Test Puerto Rico Short Range - # df = setup_gcp.get( - # configuration="short_range_puertorico", - # reference_time="20210501T06Z" - # ) - # assert df['value_time'].unique().size == 48 - @pytest.mark.slow def test_get_no_da(setup_gcp): # No DA Cycles cycles = [ - ('analysis_assim_no_da', "20210501T06Z", 3), - # ('analysis_assim_extend_no_da', "20210501T16Z", 28), - # ('analysis_assim_hawaii_no_da', "20210501T00Z", 12), - # ('analysis_assim_long_no_da', "20210501T00Z", 12), - # ('analysis_assim_puertorico_no_da', "20210501T00Z", 3), - # ('medium_range_no_da', "20210501T00Z", 80), - # ('short_range_hawaii_no_da', "20210501T00Z", 192), - # ('short_range_puertorico_no_da', "20210501T06Z", 48) + ('analysis_assim_no_da', "20210501T06Z", 3) ] # Test for cycle, ref_tm, validate in cycles: From 543f5df9c0e0e594a97c93bf15f2ff5112fc082a Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 13:59:25 -0500 Subject: [PATCH 13/20] use client unit handler --- python/nwm_client/src/hydrotools/nwm_client/gcp.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/python/nwm_client/src/hydrotools/nwm_client/gcp.py b/python/nwm_client/src/hydrotools/nwm_client/gcp.py index 1d39c8b5..7cb3f431 100644 --- a/python/nwm_client/src/hydrotools/nwm_client/gcp.py +++ b/python/nwm_client/src/hydrotools/nwm_client/gcp.py @@ -467,8 +467,7 @@ def get( # Convert units if self._unit_handler: - u = UnitHandler.UnitHandler() - df.loc[:, "value"] = u.convert_values(df["value"], "m^3/s", "ft^3/s") + df.loc[:, "value"] = self._unit_handler.convert_values(df["value"], "m^3/s", "ft^3/s") df["measurement_unit"] = "ft^3/s" return df From bd61afb73005dbeca4266154c6f78d3e4f66eb39 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 13:59:39 -0500 Subject: [PATCH 14/20] test gcp unit conversion --- python/nwm_client/tests/test_gcp.py | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/python/nwm_client/tests/test_gcp.py b/python/nwm_client/tests/test_gcp.py index 85a6f0f7..ab99ae77 100644 --- a/python/nwm_client/tests/test_gcp.py +++ b/python/nwm_client/tests/test_gcp.py @@ -175,3 +175,14 @@ def test_invalid_configuration_exception(setup_gcp): configuration="medium_range", reference_time="20210101T06Z" ) + +@pytest.mark.slow +def test_get_US(setup_gcp_US): + # Test ANA + df = setup_gcp_US.get( + configuration="analysis_assim", + reference_time="20210101T01Z" + ) + assert df['value_time'].unique().size == 3 + assert (df['measurement_unit'] == "ft^3/s").all() + \ No newline at end of file From 2fe12cdd38dd87f73ada48af44274e0ff7cc8e48 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 14:01:41 -0500 Subject: [PATCH 15/20] remove old gcp client --- python/gcp_client/CONTRIBUTING.md | 1 - python/gcp_client/LICENSE | 1 - python/gcp_client/MANIFEST.in | 2 - python/gcp_client/README.md | 94 - python/gcp_client/SECURITY.md | 1 - python/gcp_client/TERMS.md | 1 - python/gcp_client/pyproject.toml | 6 - python/gcp_client/pytest.ini | 4 - python/gcp_client/setup.cfg | 48 - .../src/hydrotools/gcp_client/__init__.py | 8 - .../src/hydrotools/gcp_client/_version.py | 1 - .../data/RouteLink_CONUS_NWMv2.1.6.csv | 8022 ----------------- .../gcp_client/data/RouteLink_HI.csv | 85 - .../gcp_client/data/RouteLink_NWMv2.0.csv | 7565 ---------------- .../RouteLink_PuertoRico_NWMv2.1_20191204.csv | 105 - .../src/hydrotools/gcp_client/gcp.py | 513 -- .../src/hydrotools/gcp_client/utils.py | 140 - 17 files changed, 16597 deletions(-) delete mode 120000 python/gcp_client/CONTRIBUTING.md delete mode 120000 python/gcp_client/LICENSE delete mode 100644 python/gcp_client/MANIFEST.in delete mode 100644 python/gcp_client/README.md delete mode 120000 python/gcp_client/SECURITY.md delete mode 120000 python/gcp_client/TERMS.md delete mode 100644 python/gcp_client/pyproject.toml delete mode 100644 python/gcp_client/pytest.ini delete mode 100644 python/gcp_client/setup.cfg delete mode 100644 python/gcp_client/src/hydrotools/gcp_client/__init__.py delete mode 100644 python/gcp_client/src/hydrotools/gcp_client/_version.py delete mode 100644 python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_CONUS_NWMv2.1.6.csv delete mode 100644 python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_HI.csv delete mode 100644 python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_NWMv2.0.csv delete mode 100644 python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_PuertoRico_NWMv2.1_20191204.csv delete mode 100644 python/gcp_client/src/hydrotools/gcp_client/gcp.py delete mode 100644 python/gcp_client/src/hydrotools/gcp_client/utils.py diff --git a/python/gcp_client/CONTRIBUTING.md b/python/gcp_client/CONTRIBUTING.md deleted file mode 120000 index f939e75f..00000000 --- a/python/gcp_client/CONTRIBUTING.md +++ /dev/null @@ -1 +0,0 @@ -../../CONTRIBUTING.md \ No newline at end of file diff --git a/python/gcp_client/LICENSE b/python/gcp_client/LICENSE deleted file mode 120000 index 30cff740..00000000 --- a/python/gcp_client/LICENSE +++ /dev/null @@ -1 +0,0 @@ -../../LICENSE \ No newline at end of file diff --git a/python/gcp_client/MANIFEST.in b/python/gcp_client/MANIFEST.in deleted file mode 100644 index 4db0f21b..00000000 --- a/python/gcp_client/MANIFEST.in +++ /dev/null @@ -1,2 +0,0 @@ -include LICENSE -include src/hydrotools/gcp_client/data/* diff --git a/python/gcp_client/README.md b/python/gcp_client/README.md deleted file mode 100644 index 91456e8c..00000000 --- a/python/gcp_client/README.md +++ /dev/null @@ -1,94 +0,0 @@ -# HydroTools :: GCP Client - -This subpackage implements an interface to retrieve National Water Model (NWM) data from [Google Cloud Platform](https://console.cloud.google.com/marketplace/details/noaa-public/national-water-model). The primary use for this tool is to populate `pandas.Dataframe` objects with NWM streamflow data. See the [GCP Client Documentation](https://noaa-owp.github.io/hydrotools/hydrotools.gcp_client.html) for a complete list and description of the currently available methods. To report bugs or request new features, submit an issue through the [HydroTools Issue Tracker](https://github.com/NOAA-OWP/hydrotools/issues) on GitHub. - -## Installation - -In accordance with the python community, we support and advise the usage of virtual -environments in any workflow using python. In the following installation guide, we -use python's built-in `venv` module to create a virtual environment in which the -tool will be installed. Note this is just personal preference, any python virtual -environment manager should work just fine (`conda`, `pipenv`, etc. ). - -```bash -# Create and activate python environment, requires python >= 3.8 -$ python3 -m venv env -$ source env/bin/activate -$ python3 -m pip install --upgrade pip wheel - -# Install gcp_client -$ python3 -m pip install hydrotools.gcp_client -``` - -## Usage - -The following example demonstrates how one might use `hydrotools.gcp_client` to retrieve NWM streamflow forecasts. - -### Code -```python -# Import the GCP Client -from hydrotools.gcp_client import gcp - -# Instantiate model data service -model_data_service = gcp.NWMDataService() - -# Retrieve forecast data -# By default, only retrieves data at USGS gaging sites in -# CONUS that are used for model assimilation -forecast_data = model_data_service.get( - configuration = "short_range", - reference_time = "20210101T01Z" - ) - -# Look at the data -print(forecast_data.info(memory_usage='deep')) -print(forecast_data[['value_time', 'value']].head()) -``` -### Output -```console - -RangeIndex: 137628 entries, 0 to 137627 -Data columns (total 8 columns): - # Column Non-Null Count Dtype ---- ------ -------------- ----- - 0 reference_time 137628 non-null datetime64[ns] - 1 value_time 137628 non-null datetime64[ns] - 2 nwm_feature_id 137628 non-null int64 - 3 value 137628 non-null float32 - 4 usgs_site_code 137628 non-null category - 5 configuration 137628 non-null category - 6 measurement_unit 137628 non-null category - 7 variable_name 137628 non-null category -dtypes: category(4), datetime64[ns](2), float32(1), int64(1) -memory usage: 5.1 MB -None - value_time value -0 2021-01-01 02:00:00 5.29 -1 2021-01-01 03:00:00 5.25 -2 2021-01-01 04:00:00 5.20 -3 2021-01-01 05:00:00 5.12 -4 2021-01-01 06:00:00 5.03 -``` -### System Requirements -We employ several methods to make sure the resulting `pandas.DataFrame` produced by `gcp_client` are as efficient and manageable as possible. Nonetheless, this package can potentially use a large amount of memory. - -The National Water Model generates multiple forecasts per day at over 3.7 million locations across the United States. A single forecast could be spread across hundreds of files and require repeated calls to Google Cloud Platform. The intermediate steps of retrieving and processing these files into leaner `DataFrame` may use several GB of memory. As such, recommended minimum requirements to use this package are a 4-core consumer processor and 8 GB of RAM. - -## Development - -This package uses a setup configuration file (`setup.cfg`) and assumes use of the `setuptools` backend to build the package. To install the package for development use: -```bash -$ python3 -m venv env -$ source env/bin/activate -$ python3 -m pip install -U pip -$ python3 -m pip install -U setuptools -$ python3 -m pip install -e .[develop] -``` - -To generate a source distribution: -```bash -$ python3 -m pip install -U wheel build -$ python3 -m build -``` - -The packages generated in `dist/` can be installed directly with `pip` or uploaded to PyPI using `twine`. \ No newline at end of file diff --git a/python/gcp_client/SECURITY.md b/python/gcp_client/SECURITY.md deleted file mode 120000 index 42cce94f..00000000 --- a/python/gcp_client/SECURITY.md +++ /dev/null @@ -1 +0,0 @@ -../../SECURITY.md \ No newline at end of file diff --git a/python/gcp_client/TERMS.md b/python/gcp_client/TERMS.md deleted file mode 120000 index 873e35b9..00000000 --- a/python/gcp_client/TERMS.md +++ /dev/null @@ -1 +0,0 @@ -../../TERMS.md \ No newline at end of file diff --git a/python/gcp_client/pyproject.toml b/python/gcp_client/pyproject.toml deleted file mode 100644 index 7b52b9ba..00000000 --- a/python/gcp_client/pyproject.toml +++ /dev/null @@ -1,6 +0,0 @@ -[build-system] -build-backend = "setuptools.build_meta" -requires = [ - "setuptools>=42", - "wheel", -] diff --git a/python/gcp_client/pytest.ini b/python/gcp_client/pytest.ini deleted file mode 100644 index 81cf57a0..00000000 --- a/python/gcp_client/pytest.ini +++ /dev/null @@ -1,4 +0,0 @@ -[pytest] -markers = - slow: marks tests as slow (deselect with '-m "not slow"') - \ No newline at end of file diff --git a/python/gcp_client/setup.cfg b/python/gcp_client/setup.cfg deleted file mode 100644 index 9334a202..00000000 --- a/python/gcp_client/setup.cfg +++ /dev/null @@ -1,48 +0,0 @@ -[metadata] -name = hydrotools.gcp_client -version = attr: hydrotools.gcp_client._version.__version__ -author = Jason A. Regina -author_email = jason.regina@noaa.gov -description = Retrieve National Water Model data from Google Cloud Platform. -long_description = file: README.md -long_description_content_type = text/markdown; charset=UTF-8 -license = USDOC -license_files = - LICENSE -url = https://github.com/NOAA-OWP/hydrotools -project_urls = - Documentation = https://noaa-owp.github.io/hydrotools/hydrotools.gcp_client.html - Source = https://github.com/NOAA-OWP/hydrotools/tree/main/python/gcp_client - Tracker = https://github.com/NOAA-OWP/hydrotools/issues -classifiers = - Development Status :: 3 - Alpha - Intended Audience :: Education - Intended Audience :: Science/Research - License :: Free To Use But Restricted - Programming Language :: Python :: 3.7 - Programming Language :: Python :: 3.8 - Programming Language :: Python :: 3.9 - Topic :: Scientific/Engineering :: Hydrology - Operating System :: OS Independent - -[options] -packages = find_namespace: -package_dir = - =src -install_requires = - numpy>=1.20.0 - pandas - xarray - h5netcdf - hydrotools.caches>=0.1.2 - google-cloud-storage -python_requires = >=3.7 -include_package_data = True - -[options.packages.find] -where = src - -[options.extras_require] -develop = - pytest - \ No newline at end of file diff --git a/python/gcp_client/src/hydrotools/gcp_client/__init__.py b/python/gcp_client/src/hydrotools/gcp_client/__init__.py deleted file mode 100644 index e623f659..00000000 --- a/python/gcp_client/src/hydrotools/gcp_client/__init__.py +++ /dev/null @@ -1,8 +0,0 @@ -# removing __version__ import will cause build to fail. see: https://github.com/pypa/setuptools/issues/1724#issuecomment-627241822 -from ._version import __version__ - -from .gcp import NWMDataService -import warnings - -warning_message = "Importing gcp_client is deprecated. Import hydrotools.nwm_client.gcp" -warnings.warn(warning_message, UserWarning) diff --git a/python/gcp_client/src/hydrotools/gcp_client/_version.py b/python/gcp_client/src/hydrotools/gcp_client/_version.py deleted file mode 100644 index 13ffcf42..00000000 --- a/python/gcp_client/src/hydrotools/gcp_client/_version.py +++ /dev/null @@ -1 +0,0 @@ -__version__ = "4.1.2" diff --git a/python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_CONUS_NWMv2.1.6.csv b/python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_CONUS_NWMv2.1.6.csv deleted file mode 100644 index 848f0d1c..00000000 --- a/python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_CONUS_NWMv2.1.6.csv +++ /dev/null @@ -1,8022 +0,0 @@ -# Convention: CF-1.6 -# featureType: timeSeries -# processing_notes: This file was produced Fri Apr 12 07:16:15 2019 by Kevin Sampson (NCAR) and has the following attributes: -# This file uses the NHDPlus v21 "flattened" geodatabase: NHDPlusV21_National_Flattened.gdb. -# This file excludes reaches in Puerto Rico and Hawaii. -# Routing using Arc-Hydro derived segments for Regions 01a, 02b, 09a, 10i, 10h, 13a, 13b, 13d, 15a, 15b, 17b, 18a. -# Topology fixes using: Topology_Fixer.csv. -# NHDFlowlines removed using: Remove_COMIDs_NHDFLowline_Network.csv. -# Gage preference list: numberOf100QualityObs.2017-03-15.csv. -# Gage subset list: numberOf100QualityObs.2017-03-15.csv. -# Gage additions made using: Add_Gage_Association.csv. -# Gage-to-flowline association changes made using: Bad_Gage_Associations.csv. -# Tidal-influenced gages removed using: TidalGageList_20170316.csv. -# Waterbody associations using spatial join with Lake feature class Input_Waterbodies_NWM_v2_1.shp. -# region: CONUS -# history: Thu Sep 19 11:44:20 2019: ncatted -O -a version,global,c,c,NWM v2.1 alpha RouteLink_NWMv2.1.nc -# Thu Sep 19 11:43:55 2019: ncatted -O -a region,global,c,c,CONUS RouteLink_NWMv2.1.nc -# Created Fri Apr 12 10:38:40 2019 -# NCO: netCDF Operators version 4.7.9 (Homepage = http://nco.sf.net, Code = http://github.com/nco/nco) -# version: NWM v2.1 alpha -# Extracted from NetCDF on 2021-05-03 15:46:23.642612+00:00 -# Some column names were changed when extracting from the original NetCDF format. -# link -> nwm_feature_id -# gages -> usgs_site_code -# lat -> latitude -# lon -> longitude -# -feature_id,nwm_feature_id,from,to,longitude,latitude,alt,order,Qi,MusK,MusX,Length,n,So,ChSlp,BtmWdth,NHDWaterbodyComID,time,usgs_site_code,Kchan,ascendingIndex,nCC,TopWdthCC,TopWdth -9206,7086109,0,7087369,-95.66818,48.98779,320.38,4,0.0,3600.0,0.2,2182.0,0.055,0.00132,0.31050202,12.0640955,-9999,2000-01-01,05106000,0,1347733,0.11,60.320477,20.106825 -12736,7040481,0,7040415,-96.27213,47.7953,328.83,2,0.0,3600.0,0.2,4015.0,0.06,0.00253,0.4953644,4.184831,-9999,2000-01-01,05078520,0,327677,0.12,20.924154,6.974718 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-2773832,41027563,0,41027587,-78.962845,43.865414,78.754,3,0.0,3600.0,0.2,4944.0,0.055,0.00162,0.39056298,7.1725626,-9999,2000-01-01,02HC018,0,2414566,0.11,35.862812,11.954271 -2773849,41027461,0,41027522,-78.87799,43.91177,124.32,4,0.0,3600.0,0.2,8609.0,0.055,0.00441,0.39413556,7.0260415,-9999,2000-01-01,02HD008,0,2410970,0.11,35.130207,11.71007 -2773870,41027385,0,41027392,-78.61419,43.919796,107.279,3,0.0,3600.0,0.2,9265.0,0.055,0.0041,0.40214837,6.7127194,-9999,2000-01-01,02HD009,0,2414471,0.11,33.5636,11.187866 -2773934,41027169,0,41027191,-77.99875,43.99753,142.9,3,0.0,3600.0,0.2,10936.0,0.055,0.00622,0.42015088,6.078393,-9999,2000-01-01,02HD010,0,2411047,0.11,30.391966,10.130655 -2774039,41026694,0,41026710,-77.60229,44.107075,89.126,2,0.0,3600.0,0.2,3788.0,0.06,0.00396,0.45606402,5.0471816,-9999,2000-01-01,02HK011,0,2414512,0.12,25.235907,8.411969 -2774100,41028412,0,41028377,-79.37647,43.13729,156.076,4,0.0,3600.0,0.2,5577.0,0.055,0.01614,0.33599943,10.088039,-9999,2000-01-01,02HA006,0,2410456,0.11,50.440197,16.813398 -2774163,41028239,0,41028241,-79.868774,43.298664,89.519,3,0.0,3600.0,0.2,3287.0,0.055,0.00243,0.4066817,6.5443068,-9999,2000-01-01,02HB012,0,2410885,0.11,32.721535,10.907178 -2774217,41025921,0,41025949,-76.57198,44.232464,94.701,1,0.0,3600.0,0.2,11194.0,0.06,0.00232,0.5253437,3.6629875,-9999,2000-01-01,02HM009,0,2411145,0.12,18.314938,6.1049795 -2774284,41027595,0,41027646,-79.057106,43.848682,80.184,4,0.0,3600.0,0.2,3979.0,0.055,0.00101,0.34188482,9.698692,-9999,2000-01-01,02HC049,0,2410378,0.11,48.493458,16.164486 -2774341,21972746,0,15502727,-76.50828,43.45481,79.79,6,0.0,3600.0,0.2,2236.0,0.05,0.00225,0.18951629,36.940994,-9999,2000-01-01,04249000,0,2398651,0.1,184.70496,61.56832 -2774365,41027232,0,15502727,-78.181145,43.961494,82.057,4,0.0,3600.0,0.2,2881.0,0.055,0.00347,0.38223952,7.531476,-9999,2000-01-01,02HD019,0,2410247,0.11,37.65738,12.55246 -2774431,41026960,0,15502727,-77.74562,44.03549,128.58,2,0.0,3600.0,0.2,8924.0,0.06,0.00661,0.478505,4.5265236,-9999,2000-01-01,02HD018,0,2621125,0.12,22.632618,7.5442057 -2774492,41026710,0,15502727,-77.57914,44.105713,73.877,6,0.0,3600.0,0.2,2394.0,0.05,1e-05,0.19105344,36.270744,-9999,2000-01-01,02HK010,0,2316499,0.1,181.35371,60.451237 -2774571,41026357,0,15502727,-77.21362,44.206173,78.812,4,0.0,3600.0,0.2,12936.0,0.055,0.00062,0.28409684,14.756508,-9999,2000-01-01,02HM003,0,2393655,0.11,73.78254,24.59418 -2774608,41028309,0,15502727,-79.76921,43.244583,88.515,3,0.0,3600.0,0.2,8552.0,0.055,0.00246,0.43024483,5.7599487,-9999,2000-01-01,02HA014,0,2316485,0.11,28.799744,9.599915 -2774658,41028162,0,15502727,-79.72187,43.422867,122.973,2,0.0,3600.0,0.2,9153.0,0.06,0.0059,0.48355332,4.4201145,-9999,2000-01-01,02HB027,0,2428895,0.12,22.100573,7.3668575 -2774676,41028035,0,15502727,-79.600334,43.57399,119.583,2,0.0,3600.0,0.2,8775.0,0.06,0.0049,0.47571623,4.586894,-9999,2000-01-01,02HB030,0,2428908,0.12,22.934471,7.6448236 -2774681,41028026,0,15502727,-79.55379,43.597164,99.138,3,0.0,3600.0,0.2,5228.0,0.055,0.00746,0.3508675,9.144984,-9999,2000-01-01,02HC030,0,2428909,0.11,45.72492,15.24164 -2774693,41025904,0,15502727,-76.61464,44.25019,83.133,3,0.0,3600.0,0.2,5884.0,0.055,0.00136,0.36621514,8.299243,-9999,2000-01-01,02HM005,0,2313601,0.11,41.496216,13.832071 -2775156,15489152,0,15489114,-75.38002,44.601517,87.66,6,0.0,3600.0,0.2,3699.0,0.05,7e-05,0.24275407,21.07641,-9999,2000-01-01,04263000,0,2548724,0.1,105.38206,35.127354 -2775604,41022861,0,41022863,-75.81419,44.516617,79.07,3,0.0,3600.0,0.2,7259.0,0.055,0.00207,0.38860795,7.2546134,-9999,2000-01-01,02MB006,0,2611639,0.11,36.273067,12.0910225 -2775864,41022723,0,25293230,-75.694435,44.58507,81.494,2,0.0,3600.0,0.2,4413.0,0.06,0.00272,0.43400955,5.6473203,-9999,2000-01-01,02MB010,0,2621203,0.12,28.2366,9.4122 -2776119,15465127,0,15465121,-74.97988,44.840992,57.77,5,0.0,3600.0,0.2,1155.0,0.05,0.0013,0.23814653,22.012047,-9999,2000-01-01,04268000,0,2611369,0.1,110.060234,36.686745 -2776269,15476223,0,15476217,-75.07646,44.849354,77.56,5,0.0,3600.0,0.2,6392.0,0.05,0.00166,0.2614271,17.81747,-9999,2000-01-01,04265432,0,2548950,0.1,89.08735,29.695784 -2776275,15456882,0,15456878,-74.77776,44.868458,66.28,5,0.0,3600.0,0.2,1635.0,0.05,0.00152,0.26042712,17.972921,-9999,2000-01-01,04269000,0,2621153,0.1,89.86461,29.95487 -2776699,15448784,0,15448668,-74.54355,44.94828,55.88,4,0.0,3600.0,0.2,6836.0,0.055,0.00055,0.34648862,9.409049,-9999,2000-01-01,04270200,0,2611049,0.11,47.045242,15.681748 diff --git a/python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_HI.csv b/python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_HI.csv deleted file mode 100644 index c68e1d48..00000000 --- a/python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_HI.csv +++ /dev/null @@ -1,85 +0,0 @@ -# Convention: CF-1.6 -# featureType: timeSeries -# processing_notes: This file was produced Fri Jan 12 11:41:28 2018 by Kevin Sampson (NCAR) and has the following attributes: -# This file uses the NHDPlus v21 "flattened" HI geodatabase v03: NHDPlusV21_National_HI_PR_VI_PI_Seamless_Geodatabase_03.gdb. -# This file includes only reaches in Hawaii (VPUID 20). -# Topology fixes using: Topology_Fixer.csv. -# NHDFlowlines removed using: Remove_COMIDs_NHDFLowline_Network.csv. -# Using alternate NHD gage list: C:\Data\DL\Delete\NHDPlusNationalData\NHDPlusV21_National_HI_PR_VI_PI_Seamless_Geodatabase_03.gdb\NHDEvents\Gage. -# Gage preference list: numberOf100QualityObs.2017-03-15.csv. -# Gage additions made using: Add_Gage_Association.csv. -# Gage-to-flowline association changes made using: Bad_Gage_Associations.csv. -# Tidal-influenced gages removed using: TidalGageList_20170316.csv. -# Waterbody associations performed using spatial join with NHDWaterbodies feature class. Waterbody feature class used: HI_NHDWaterbodies_Selected_plus_final.shp -# history: Thu Sep 19 11:01:14 2019: ncatted -O -a region,global,c,c,Hawaii Route_Link_Hawaii_NWM_v2_1_alpha.nc -# Thu Sep 19 11:00:56 2019: ncatted -O -a version,global,c,c,NWM v2.1 alpha Route_Link_Hawaii_NWM_v2_1_alpha.nc -# Created Fri Jan 12 11:41:44 2018 -# NCO: netCDF Operators version 4.7.9 (Homepage = http://nco.sf.net, Code = http://github.com/nco/nco) -# region: Hawaii -# version: NWM v2.1 -# Extracted from NetCDF on 2021-05-03 15:46:23.642612+00:00 -# Some column names were changed when extracting from the original NetCDF format. -# link -> nwm_feature_id -# gages -> usgs_site_code -# lat -> latitude -# lon -> longitude -# -feature_id,nwm_feature_id,from,to,longitude,latitude,alt,order,Qi,MusK,MusX,Length,n,So,ChSlp,BtmWdth,NHDWaterbodyComID,time,usgs_site_code,Kchan,ascendingIndex,nCC,TopWdthCC,TopWdth 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-5284,800015240,0,800017479,-156.14777,20.805923,786.73,2,0.0,3600.0,0.2,3691.0,0.035,0.107,0.56185323,3.1455424,-9999,2000-01-01,16518000,0,6921,0.12,15.727712,5.2425704 -5419,800016809,0,0,-157.78973,21.40808,21.75,2,0.0,3600.0,0.2,2032.0,0.035,0.01,0.63298583,2.4007545,-9999,2000-01-01,16265000,0,11165,0.12,12.003773,4.0012574 -5669,800001894,0,800001902,-155.68434,20.085627,1290.83,2,0.0,3600.0,0.2,985.0,0.035,0.051,0.63807744,2.357551,-9999,2000-01-01,16720000,0,11989,0.12,11.787755,3.929252 -5906,800005664,0,800004522,-157.79959,21.328047,92.83,3,0.0,3600.0,0.2,348.0,0.035,0.034,0.6759337,2.06883,-9999,2000-01-01,16240500,0,1590,0.11,10.34415,3.4480498 -5966,800006488,0,800013144,-155.67317,20.072088,1234.17,1,0.0,3600.0,0.2,695.0,0.035,0.07,0.697576,1.9261936,-9999,2000-01-01,16725000,0,6028,0.12,9.630968,3.2103229 -6095,800008811,0,800008822,-155.481,19.209587,388.96,2,0.0,3600.0,0.2,1327.0,0.035,0.071,0.6336729,2.3948584,-9999,2000-01-01,16770500,0,9735,0.12,11.974292,3.9914305 -6460,800015253,0,800008612,-156.11842,20.799955,694.3,2,0.0,3600.0,0.2,2110.0,0.035,0.14,0.56353825,3.1242642,-9999,2000-01-01,16508000,0,9445,0.12,15.621322,5.207107 -6554,800016796,0,800003416,-157.81938,21.41177,90.23,2,0.0,3600.0,0.2,1570.0,0.035,0.029,0.6592086,2.189722,-9999,2000-01-01,16275000,0,7624,0.12,10.948609,3.6495366 -7054,800010025,0,800010024,-157.94493,21.516352,368.12,2,0.0,3600.0,0.2,129.0,0.035,0.052,0.6689635,2.118013,-9999,2000-01-01,16200000,0,12292,0.12,10.590065,3.5300214 -7142,800012126,0,800000898,-158.06877,21.402792,211.89,2,0.0,3600.0,0.2,481.0,0.035,0.052,0.62195873,2.498319,-9999,2000-01-01,16212480,0,11128,0.12,12.491594,4.1638646 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deleted file mode 100644 index c8a965d8..00000000 --- a/python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_NWMv2.0.csv +++ /dev/null @@ -1,7565 +0,0 @@ -# Convention: CF-1.6 -# featureType: timeSeries -# history: Created Wed Nov 07 23:45:44 2018 -# processing_notes: This file was produced Wed Nov 07 17:14:48 2018 by Kevin Sampson (NCAR) and has the following attributes: -# This file uses the NHDPlus v21 "flattened" geodatabase: NHDPlusV21_National_Flattened.gdb. -# This file excludes reaches in Puerto Rico and Hawaii. -# Routing using Arc-Hydro derived segments for Regions 01a, 02b, 09a, 10i, 10h, 13a, 13b, 13d, 15a, 15b, 17b, 18a. -# Topology fixes using: Topology_Fixer.csv. -# NHDFlowlines removed using: Remove_COMIDs_NHDFLowline_Network.csv. -# Gage preference list: numberOf100QualityObs.2017-03-15.csv. -# Gage subset list: numberOf100QualityObs.2017-03-15.csv. -# Gage additions made using: Add_Gage_Association.csv. -# Gage-to-flowline association changes made using: Bad_Gage_Associations.csv. -# Tidal-influenced gages removed using: TidalGageList_20170316.csv. -# Waterbody associations using spatial join with Lake feature class Waterbodies_V2_1km_plus_20181012.shp. -# version: NWM v2.0 -# Extracted from NetCDF on 2021-05-03 15:46:23.642612+00:00 -# Some column names were changed when extracting from the original NetCDF format. -# link -> nwm_feature_id -# gages -> usgs_site_code -# lat -> latitude -# lon -> longitude -# -feature_id,nwm_feature_id,from,to,longitude,latitude,alt,order,Qi,MusK,MusX,Length,n,So,ChSlp,BtmWdth,NHDWaterbodyComID,time,usgs_site_code,Kchan,ascendingIndex,nCC,TopWdthCC,TopWdth -9206,7086109,0,7087369,-95.66818,48.98779,320.38,4,0.0,3600.0,0.2,2182.0,0.055,0.001,0.31050202,12.0640955,-9999,2000-01-01,05106000,0,1347733,0.11,60.320477,20.106825 -12736,7040481,0,7040415,-96.27213,47.7953,328.83,2,0.0,3600.0,0.2,4015.0,0.06,0.003,0.49536443,4.184831,-9999,2000-01-01,05078520,0,327676,0.12,20.924154,6.974718 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-2728410,15048247,0,15048249,-121.689156,38.142933,1.35,7,0.0,3600.0,0.2,8515.0,0.045,1e-05,0.14870483,64.00845,-9999,2000-01-01,11455420,0,2656587,0.09,320.04227,106.680756 -2728411,1889650,0,1889834,-121.70747,38.040974,0.0,7,0.0,3600.0,0.2,6038.0,0.045,1e-05,0.15966915,54.476162,-9999,2000-01-01,11337190,0,2656782,0.09,272.38083,90.7936 diff --git a/python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_PuertoRico_NWMv2.1_20191204.csv b/python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_PuertoRico_NWMv2.1_20191204.csv deleted file mode 100644 index aa54ff80..00000000 --- a/python/gcp_client/src/hydrotools/gcp_client/data/RouteLink_PuertoRico_NWMv2.1_20191204.csv +++ /dev/null @@ -1,105 +0,0 @@ -# Convention: CF-1.6 -# featureType: timeSeries -# history: Created Wed Mar 27 20:39:32 2019 -# processing_notes: This file was produced Wed Mar 27 20:36:25 2019 by Kevin Sampson (NCAR) and has the following attributes: -# This file uses the NHDPlus v21 "flattened" geodatabase: NHDPlusV21_National_HI_PR_VI_PI_Seamless_Geodatabase_03.gdb. -# Topology fixes using: Topology_Fixer.csv. -# NHDFlowlines removed using: Remove_COMIDs_NHDFLowline_Network.csv. -# Gage preference list: numberOf100QualityObs.2017-03-15.csv. -# Gage subset list: numberOf100QualityObs.2017-03-15.csv. -# Gage additions made using: Add_Gage_Association.csv. -# Gage-to-flowline association changes made using: Bad_Gage_Associations.csv. -# Tidal-influenced gages removed using: TidalGageList_20170316.csv. -# Waterbody associations using spatial join with Lake feature class Input_Reservoirs.shp. -# version: NWM v2.1 -# Extracted from NetCDF on 2021-05-03 15:46:23.642612+00:00 -# Some column names were changed when extracting from the original NetCDF format. -# link -> nwm_feature_id -# gages -> usgs_site_code -# lat -> latitude -# lon -> longitude -# 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-================================ -This module provides classes that offer a convenient -interface to retrieve National Water Model (NWM) data -from Google Cloud Platform. - -https://console.cloud.google.com/marketplace/details/noaa-public/national-water-model - -Classes -------- - NWMDataService - -""" - -from pandas.core.indexing import convert_from_missing_indexer_tuple -from hydrotools.caches.hdf import HDFCache - -from google.cloud import storage -from io import BytesIO -import xarray as xr -import warnings -import numpy as np -import pandas as pd -from os import cpu_count -from concurrent.futures import ProcessPoolExecutor -from typing import Union -import numpy.typing as npt -from pathlib import Path -from collections.abc import Iterable - -# Global singletons for holding location and df/None of NWM feature id to usgs site -# code mapping -_FEATURE_ID_TO_USGS_SITE_MAP_FILES = ( - Path(__file__).resolve().parent / "data/RouteLink_CONUS_NWMv2.1.6.csv", - Path(__file__).resolve().parent / "data/RouteLink_PuertoRico_NWMv2.1_20191204.csv", - Path(__file__).resolve().parent / "data/RouteLink_HI.csv", -) - -class NWMDataService: - """A Google Cloud Storage client class. - The NWMDataService class provides various methods for constructing - requests, retrieving data, and parsing responses from the NWM dataset - on Google Cloud Platform. - """ - - def __init__( - self, - bucket_name: str = 'national-water-model', - max_processes: int = None, - *, - location_metadata_mapping: pd.DataFrame = None, - cache_path: Union[str, Path] = "gcp_client.h5", - cache_group: str = 'gcp_client' - ): - """Instantiate NWM Data Service. - - Parameters - ---------- - bucket_name : str, required, default 'national-water-model' - Name of Google Cloud Bucket - max_processes : int, optional, default os.cpu_count() - 2 - Maximum number of simultaneous requests/connections. - location_metadata_mapping : pandas.DataFrame with nwm_feature_id Index and - columns of corresponding site metadata. Defaults to 7500+ usgs_site_code - used by the NWM for data assimilation. - cache_path : str or pathlib.Path, optional, default 'gcp_client.h5' - Path to HDF5 file used to store data locally. - cache_group : str, optional, default 'gcp_client' - Root group inside cache_path used to store HDF5 datasets. - Structure defaults to storing pandas.DataFrames in PyTable format. - Individual DataFrames can be accessed directly using key patterns - that look like '/{cache_group}/{configuration}/DT{reference_time}' - - Returns - ------- - data_service : gcp.NWMDataService - A NWM data service object. - - Examples - -------- - >>> from hydrotools.gcp_client import gcp - >>> model_data_service = gcp.NWMDataService() - - """ - # Set bucket name - self._bucket_name = bucket_name - - # Set max processes - if max_processes: - self._max_procs = max(max_processes, 1) - else: - self._max_procs = max((cpu_count() - 2), 1) - - # Set default site mapping - if location_metadata_mapping != None: - self.crosswalk = location_metadata_mapping - else: - dfs = [] - for MAP_FILE in _FEATURE_ID_TO_USGS_SITE_MAP_FILES: - dfs.append(pd.read_csv( - MAP_FILE, - dtype={"nwm_feature_id": int, "usgs_site_code": str}, - comment='#' - ).set_index('nwm_feature_id')[['usgs_site_code']]) - self.crosswalk = pd.concat(dfs) - - # Set caching options - self._cache_path = Path(cache_path) - self._cache_group = cache_group - - # TODO find publicly available authoritative source of service - # compatible valid model configuration strings - def list_blobs( - self, - configuration: str, - reference_time: str, - must_contain: str = 'channel_rt' - ) -> list: - """List available blobs with provided parameters. - - Parameters - ---------- - configuration : str, required - Particular model simulation or forecast configuration. For a list - of available configurations see NWMDataService.configurations - reference_time : str, required - Model simulation or forecast issuance/reference time in - YYYYmmddTHHZ format. - must_contain : str, optional, default 'channel_rt' - Optional substring found in each blob name. - - Returns - ------- - blob_list : list - A list of blob names that satisfy the criteria set by the - parameters. - - Examples - -------- - >>> from hydrotools.gcp_client import gcp - >>> model_data_service = gcp.NWMDataService() - >>> blob_list = model_data_service.list_blobs( - ... configuration = "short_range", - ... reference_time = "20210101T01Z" - ... ) - - """ - # Validate configuration - if configuration not in self.configurations: - message = f'Invalid configuration. Must select from {str(self.configurations)}' - raise ValueError(message) - - # Break-up reference time - tokens = reference_time.split('T') - issue_date = tokens[0] - issue_time = tokens[1].lower() - - # Connect to bucket with anonymous client - client = storage.Client.create_anonymous_client() - bucket = client.bucket(self.bucket_name) - - # Get list of blobs - blobs = client.list_blobs( - bucket, - prefix=f'nwm.{issue_date}/{configuration}/nwm.t{issue_time}' - ) - - # Return blob names - return [b.name for b in list(blobs) if must_contain in b.name] - - def get_blob(self, blob_name: str) -> bytes: - """Retrieve a blob from the data service as bytes. - - Parameters - ---------- - blob_name : str, required - Name of blob to retrieve. - - Returns - ------- - data : bytes - The data stored in the blob. - - """ - # Setup anonymous client and retrieve blob data - client = storage.Client.create_anonymous_client() - bucket = client.bucket(self.bucket_name) - return bucket.blob(blob_name).download_as_bytes(timeout=120) - - def get_Dataset( - self, - blob_name: str, - feature_id_filter: Union[npt.ArrayLike, bool] = True - ) -> xr.Dataset: - """Retrieve a blob from the data service as xarray.Dataset - - Parameters - ---------- - blob_name : str, required - Name of blob to retrieve. - feature_id_filter : bool or array-like, optional, default False - If True, filter data using default list of feature ids (USGS gaging locations). - Alternatively, limit data returned to feature ids in feature_id_filter - list. - - Returns - ------- - ds : xarray.Dataset - The data stored in the blob. - - """ - # Get raw bytes - raw_bytes = self.get_blob(blob_name) - - # Create Dataset - ds = xr.load_dataset( - BytesIO(raw_bytes), - engine='h5netcdf', - mask_and_scale=False - ) - - # Attempt to filter Dataset - if isinstance(feature_id_filter, Iterable): - try: - feature_id_filter = list(feature_id_filter) - return ds.sel(feature_id=feature_id_filter) - except: - warnings.warn("Invalid feature_id_filter") - return ds - - # Return unfiltered Dataset - if feature_id_filter == False: - return ds - - # Return default filtered Dataset - check = np.isin(self.crosswalk.index, ds.feature_id) - feature_id_filter = self.crosswalk[check].index - return ds.sel(feature_id=feature_id_filter) - - def get_DataFrame( - self, - *args, - streamflow_only: bool = True, - **kwargs - ) -> pd.DataFrame: - """Retrieve a blob from the data service as pandas.DataFrame - - Parameters - ---------- - args : - Positional arguments passed to get_Dataset - streamflow_only : bool, optional, default True - Only return streamflow and omit other variables. - kwargs : - Keyword arguments passed to get_Dataset - - Returns - ------- - df : pandas.DataFrame - The data stored in the blob. - - """ - # Retrieve the dataset - ds = self.get_Dataset(*args, **kwargs) - - # Transform to DataFrame - if streamflow_only: - # Convert to DataFrame - df = ds[['reference_time', 'time', 'streamflow']].to_dataframe().reset_index() - - # Extract scale factor - scale_factor = ds['streamflow'].scale_factor[0] - - # Scale data - df.loc[:, 'streamflow'] = df['streamflow'].mul(scale_factor) - else: - df = ds.to_dataframe().reset_index() - - # Release resources - ds.close() - - # Rename columns - df = df.rename(columns={ - 'time': 'value_time', - 'feature_id': 'nwm_feature_id' - }) - - # Downcast floats - df_float = df.select_dtypes(include=["float"]) - converted_float = df_float.apply(pd.to_numeric, downcast="float") - df[converted_float.columns] = converted_float - - # Return DataFrame - return df - - def get_cycle( - self, - configuration: str, - reference_time: str - ) -> pd.DataFrame: - """Return streamflow data for a single model cycle in a pandas DataFrame. - - Parameters - ---------- - configuration : str, required - Particular model simulation or forecast configuration. For a list - of available configurations see NWMDataService.configurations - reference_time : str, required - Model simulation or forecast issuance/reference time in - YYYYmmddTHHZ format. - - Returns - ------- - df : pandas.DataFrame - Simluted or forecasted streamflow data associated with a single - run of the National Water Model. - - Examples - -------- - >>> from hydrotools.gcp_client import gcp - >>> model_data_service = gcp.NWMDataService() - >>> forecast_data = model_data_service.get( - ... configuration = "short_range", - ... reference_time = "20210101T01Z" - ... ) - - """ - # Get list of blob names - blob_list = self.list_blobs( - configuration=configuration, - reference_time=reference_time - ) - - # Check for empty list - if len(blob_list) == 0: - raise ValueError("Config/Time combination returned no data") - - # Compute chunksize - chunksize = (len(blob_list) // self.max_processes) + 1 - - # Retrieve data - with ProcessPoolExecutor( - max_workers=self.max_processes) as executor: - dataframes = executor.map( - self.get_DataFrame, - blob_list, - chunksize=chunksize - ) - - # Concatenate data - df = pd.concat(dataframes) - - # Rename - df = df.rename(columns={'streamflow': 'value'}) - - # Reformat crosswalk - xwalk = self.crosswalk - - # Additional columns - xwalk['configuration'] = configuration - xwalk['measurement_unit'] = 'm3/s' - xwalk['variable_name'] = 'streamflow' - - # Apply crosswalk metadata - for col in xwalk: - df[col] = df['nwm_feature_id'].map(xwalk[col]) - - # Categorize - df['configuration'] = df['configuration'].astype("category") - df['measurement_unit'] = df['measurement_unit'].astype("category") - df['variable_name'] = df['variable_name'].astype("category") - df['usgs_site_code'] = df['usgs_site_code'].astype("category") - - # Sort values - df = df.sort_values( - by=['nwm_feature_id', 'value_time'], - ignore_index=True - ) - - # Return all data - return df - - def get( - self, - configuration: str, - reference_time: str, - cache_data: bool = True, - ) -> pd.DataFrame: - """Return streamflow data for a single model cycle in a pandas DataFrame. - - Parameters - ---------- - configuration : str, required - Particular model simulation or forecast configuration. For a list - of available configurations see NWMDataService.configurations - reference_time : str, required - Model simulation or forecast issuance/reference time in - YYYYmmddTHHZ format. - cache_data : bool, optional, default True - If True use a local HDFStore to save retrieved data. - - Returns - ------- - df : pandas.DataFrame - Simluted or forecasted streamflow data associated with a single - run of the National Water Model. - - Examples - -------- - >>> from hydrotools.gcp_client import gcp - >>> model_data_service = gcp.NWMDataService() - >>> forecast_data = model_data_service.get( - ... configuration = "short_range", - ... reference_time = "20210101T01Z" - ... ) - - """ - # Return with caching - if cache_data: - key = f"/{self.cache_group}/{configuration}/DT{reference_time}" - with HDFCache( - path=self.cache_path, - complevel=1, - complib='zlib', - fletch32=True - ) as cache: - return cache.get( - self.get_cycle, - key, - configuration=configuration, - reference_time=reference_time - ) - - # Return without caching - return self.get_cycle(configuration, reference_time) - - @property - def bucket_name(self) -> str: - return self._bucket_name - - @property - def cache_path(self) -> Path: - return self._cache_path - - @cache_path.setter - def cache_path(self, path): - self._cache_path = Path(path) - - @property - def cache_group(self) -> str: - return self._cache_group - - @cache_group.setter - def cache_group(self, group): - self._cache_group = group - - @property - def max_processes(self) -> int: - return self._max_procs - - @property - def crosswalk(self) -> pd.DataFrame: - return self._crosswalk - - @crosswalk.setter - def crosswalk(self, mapping): - # Validate mapping - if type(mapping) != pd.DataFrame: - message = "crosswalk must be a pandas.DataFrame with nwm_feature_id index and a usgs_site_code column" - raise Exception(message) - - if 'usgs_site_code' not in mapping: - message = "DataFrame does not contain a usgs_site_code column" - raise Exception(message) - - # Set crosswalk - self._crosswalk = mapping - - @property - def configurations(self) -> list: - # Valid configurations compatible with this client - # TODO Find crosswalk for Alaska - return [ - 'analysis_assim', - 'analysis_assim_extend', - 'analysis_assim_hawaii', - 'analysis_assim_long', - 'analysis_assim_puertorico', - 'long_range_mem1', - 'long_range_mem2', - 'long_range_mem3', - 'long_range_mem4', - 'medium_range_mem1', - 'medium_range_mem2', - 'medium_range_mem3', - 'medium_range_mem4', - 'medium_range_mem5', - 'medium_range_mem6', - 'medium_range_mem7', - 'short_range', - 'short_range_hawaii', - 'short_range_puertorico', - 'analysis_assim_no_da', - 'analysis_assim_extend_no_da', - 'analysis_assim_hawaii_no_da', - 'analysis_assim_long_no_da', - 'analysis_assim_puertorico_no_da', - 'medium_range_no_da', - 'short_range_hawaii_no_da', - 'short_range_puertorico_no_da' - ] diff --git a/python/gcp_client/src/hydrotools/gcp_client/utils.py b/python/gcp_client/src/hydrotools/gcp_client/utils.py deleted file mode 100644 index 1d3ac5db..00000000 --- a/python/gcp_client/src/hydrotools/gcp_client/utils.py +++ /dev/null @@ -1,140 +0,0 @@ -#!/usr/bin/env python3 -""" -================================ -Google Cloud Platform NWM Client -================================ -This module provides methods for handling common model parameter files that can be -used in part with the other portions of this subpackage. One pragmatic use of this -module is to extract nhdPlus links associated with usgs sites to filter stations of -interest. -""" - -import pandas as pd -import xarray as xr -import six -from pathlib import Path -from typing import Union, List - - -def nwm_routelink_extract_usgs_sites( - routelink_file_or_url: Union[ - str, - Path, - ] -) -> pd.DataFrame: - """From a NWM routelink file, extract nwm_feature_id's that have associated USGS - NWIS Stations, returning a df with cols `nwm_feature_id` and `usgs_site_code`. - - Routelink files can be obtained from nomads production server: - https://www.nco.ncep.noaa.gov/pmb/codes/nwprod/ - - Under ./nwm.v*/parm/domain/RouteLink*.nc - - Parameters - ---------- - routelink_file_or_url : Union[ str, Path, ] - NWM Routelink file containing channel parameters - - Returns - ------- - pd.DataFrame - Dataframe with cols `nwm_feature_id` and `usgs_site_code` - - Examples - -------- - >>> from hydrotools.gcp_client import utils - >>> df = utils.nwm_routelink_extract_usgs_sites("RouteLink_NHDPLUS.nc") - >>> import csv - >>> df.to_csv("nwm_feature_id_with_usgs_site.csv", index=False, quoting=csv.QUOTE_NONNUMERIC) - - """ - # open dataset - ds = xr.open_dataset(routelink_file_or_url, mask_and_scale=False, engine="h5netcdf") - - df = pd.DataFrame( - { - "nwm_feature_id": ds.link.values, - "usgs_site_code": ds.gages.values, - } - ) - - # remove ds from mem - del ds - - # decode bytes to string and strip whitespaces - df.loc[:, "usgs_site_code"] = df["usgs_site_code"].str.decode("utf-8").str.strip() - - # return rows that have an associated gage - return df[df["usgs_site_code"].str.len() > 0].reset_index(drop=True) - - -def crosswalk( - usgs_site_codes: Union[str, List[str]] = None, - nwm_feature_ids: Union[str, List[str]] = None, -) -> pd.DataFrame: - """Return the nwm_feature_id(s) OR usgs_site_codes for one or more provided - usgs_sites_codes or nwm_feature_ids. - - Parameters - ---------- - usgs_site_codes : Union[str, List[str]], either usgs_site_codes or nwm_feature_ids - USGS site code as string, string seperated by commas, or list of strings - nwm_feature_ids : Union[str, List[str]], either usgs_site_codes or nwm_feature_ids - NWM feature id(s) as string, string seperated by commas, or list of strings - - Returns - ------- - pd.DataFrame - df of `nwm_feature_id` and `usgs_site_code` cols - - Examples - -------- - >>> from hydrotools.gcp_client import utils - >>> cribbs_creek = "02465292" - >>> crx_walk = utils.crosswalk(usgs_site_codes=cribbs_creek) - - >>> sites = ["02465292", "04234000"] - >>> crx_walk = utils.crosswalk(usgs_site_codes=sites) - - >>> sites = "02465292,04234000" - >>> crx_walk = utils.crosswalk(usgs_site_codes=sites) - - >>> nwm_feature = 18206880 - >>> crx_walk = utils.crosswalk(nwm_feature_ids=nwm_feature) - """ - - # Handle keyword args. XNOR is invalid - if (not usgs_site_codes and not nwm_feature_ids) or ( - usgs_site_codes and nwm_feature_ids - ): - error_message = ( - "Cannot pass both `usgs_site_codes` and `nwm_feature_ids` parameters." - ) - raise TypeError(error_message) - - if usgs_site_codes: - crosswalk_var = "usgs_site_code" - crosswalk_values = usgs_site_codes - - else: - crosswalk_var = "nwm_feature_id" - crosswalk_values = nwm_feature_ids - - # Path to crosswalk file - crosswalk_file = ( - Path(__file__).resolve().parent / "data/RouteLink_NWMv2.0.csv" - ) - - # Read crosswalk file in as df, ensure its the right data types - crosswalk_df = pd.read_csv( - crosswalk_file, - dtype={"nwm_feature_id": int, "usgs_site_code": str}, - comment='#' - )[['nwm_feature_id', 'usgs_site_code']] - - # If passed site codes are singular or in string form convert to list - if isinstance(crosswalk_values, six.string_types): - crosswalk_values = crosswalk_values.split(",") - - # Return df of nwm_feature_ids and matching usgs_site_codes - return crosswalk_df[crosswalk_df[crosswalk_var].isin(crosswalk_values)] From 337660250e0c7b2fe0679d87a4b471607d4b371a Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 14:06:01 -0500 Subject: [PATCH 16/20] add example usage for unit handler --- .../nwm_client/src/hydrotools/nwm_client/UnitHandler.py | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py b/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py index a07228ca..1543166b 100644 --- a/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py +++ b/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py @@ -33,7 +33,9 @@ def conversion_factor(self, from_units: str, to_units: str) -> float: Example ------- - + >>> unit_handler = UnitHandler.UnitHandler() + >>> unit_handler.conversion_factor("ft", "m") + 0.30479999999999996 """ # Return conversion factor return self.unit_registry.Quantity(1, from_units).to(to_units).magnitude @@ -57,7 +59,9 @@ def convert_values(self, value: npt.ArrayLike, from_units: str, to_units: str) - Example ------- - + >>> unit_handler = UnitHandler.UnitHandler() + >>> unit_handler.convert_values([1, 1, 1], "ft", "m") + array([0.3048, 0.3048, 0.3048]) """ # Check for pandas.series if isinstance(value, pd.Series): From b86695c50142a89b650acb13d276c5479b192b92 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 14:17:41 -0500 Subject: [PATCH 17/20] remove gcp target from Makefile test --- Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Makefile b/Makefile index cd08095c..214b3f9d 100644 --- a/Makefile +++ b/Makefile @@ -3,7 +3,7 @@ PYTHON=$(PYENV)/bin/python3 NAMESPACE_DIR := ./python/ PACKAGE := hydrotools -SUBPACKAGES := _restclient[develop] nwis_client[develop] caches[develop] nwm_client_new[develop] events[develop] metrics[develop] nwm_client[gcp,develop] +SUBPACKAGES := _restclient[develop] nwis_client[develop] caches[develop] nwm_client_new[develop] events[develop] metrics[develop] nwm_client[develop] # discard `extras_require` qualifies from subpackage names (e.g. [develop]) SUBPACKAGES_WITHOUT_EXTRA_REQUIRE = $(shell echo $(SUBPACKAGES) | sed 's|\[[^][]*\]||g') From b0320d31a57dea2fa37c530e45f3d3c9c3467716 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 14:22:22 -0500 Subject: [PATCH 18/20] demonstrate example to retrieve values with US standard units --- python/nwm_client/README.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/python/nwm_client/README.md b/python/nwm_client/README.md index c977eb51..91605b72 100644 --- a/python/nwm_client/README.md +++ b/python/nwm_client/README.md @@ -34,6 +34,11 @@ from hydrotools.nwm_client import gcp as nwm import pandas as pd # Instantiate model data service +# By default, NWM values are in SI units +# If you prefer US standard units, nwm_client can return streamflow +# values in cubic feet per second by setting the unit_system parameter +# to "US". +# model_data_service = nwm.NWMDataService(unit_system="US") model_data_service = nwm.NWMDataService() # Retrieve forecast data From ecafd1fae89e9bd2886dffe09971f0e726795a21 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Thu, 2 Jun 2022 14:50:10 -0500 Subject: [PATCH 19/20] get python version before setting unit registry --- .../src/hydrotools/nwm_client/UnitHandler.py | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py b/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py index 1543166b..f09151ee 100644 --- a/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py +++ b/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py @@ -2,6 +2,14 @@ from dataclasses import dataclass import numpy.typing as npt import pandas as pd +import sys + +def _default_registry() -> pint.UnitRegistry: + """Get a default registry depending upon Python version.""" + version = sys.version_info.major + sys.version_info.minor/10.0 + if version < 3.8: + return pint.UnitRegistry() + return pint.UnitRegistry(cache_folder=":auto:") @dataclass class UnitHandler: @@ -13,7 +21,7 @@ class UnitHandler: pint.UnitRegistry that handles all units used by UnitHandler. """ - unit_registry: pint.UnitRegistry = pint.UnitRegistry(cache_folder=":auto:") + unit_registry: pint.UnitRegistry = _default_registry() def conversion_factor(self, from_units: str, to_units: str) -> float: """Compute and return a conversion factor from from_units to From bbabd52ca837ba1b48de1e312855a5053724b460 Mon Sep 17 00:00:00 2001 From: Jason Regina Date: Fri, 3 Jun 2022 07:40:29 -0500 Subject: [PATCH 20/20] do not create new Series for unit handling --- python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py b/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py index f09151ee..d2ac20b1 100644 --- a/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py +++ b/python/nwm_client/src/hydrotools/nwm_client/UnitHandler.py @@ -73,10 +73,7 @@ def convert_values(self, value: npt.ArrayLike, from_units: str, to_units: str) - """ # Check for pandas.series if isinstance(value, pd.Series): - return pd.Series( - data=self.unit_registry.Quantity(value.values, from_units).to(to_units).magnitude, - index=value.index - ) + return self.unit_registry.Quantity(value.values, from_units).to(to_units).magnitude # Return converted value return self.unit_registry.Quantity(value, from_units).to(to_units).magnitude