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0.3.2 (2017-05-11)

  • Properly added star-fusion support to star aligner (was previously not fully merged).
  • Changed documentation URLs to new repository.

0.3.1 (2017-05-09)

  • Several small fixes for Python 2.7 compatibility.
  • Fixed issue in CTG test that occurs when no insertions are within the gene windows.
  • Replaced usage of deprecated .ix indexer for pandas DataFrames.
  • Updated documentation.

0.3.0 (2017-05-04)

  • Refactored external tools into the imfusion.external module.
  • Use docker/tox for testing against multiple Python versions locally.
  • Added additional checks for inputs and improved error messages.
  • Added support for DataFrame insertion inputs to DE testing functions.
  • Added building of exon gtf as part of imfusion-build.
  • Added identification of endogenous fusions using STAR-Fusion as part of imfusion-insertions (using STAR). Also adds script for building (murine) STAR-Fusion references.
  • Made matplotlib/seaborn lazy imports that are only required when actually using the plotting functions. This makes IM-Fusion easier to use on headless servers/HPCs.

0.2.0 (2017-03-09)

  • Added support for the STAR aligner.
  • Added detection of novel transcripts using StringTie.
  • Changed reference building to generate a self-contained reference.
  • Refactored differential expression tests + added gene-level test.

0.1.0 (2016-03-26)

  • First release on GitHub.