From 65f52baad05ab97819e4e2ad2a8401f51395e0f8 Mon Sep 17 00:00:00 2001 From: Adrian Clay Date: Wed, 20 Mar 2024 15:00:08 +0000 Subject: [PATCH 1/4] When the OVERWRITE is turned on, overwrite the actual changed file --- .../java/uk/nhs/adaptors/pss/translator/E2EMappingIT.java | 2 +- .../nhs/adaptors/pss/translator/EhrExtractHandlingIT.java | 6 +++--- .../java/uk/nhs/adaptors/pss/util/BaseEhrHandler.java | 6 +++--- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/E2EMappingIT.java b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/E2EMappingIT.java index 207b26112..9e4ba6f49 100644 --- a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/E2EMappingIT.java +++ b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/E2EMappingIT.java @@ -316,7 +316,7 @@ protected void verifyBundle(String path, List ignoredFields) throws JSON var odsCodeToBeReplaced = getOdsToBeReplaced(expectedBundle); if (OVERWRITE_EXPECTED_JSON) { - overwriteExpectJson(patientMigrationRequest.getBundleResource()); + overwriteExpectJson(path, patientMigrationRequest.getBundleResource()); } var bundle = fhirParserService.parseResource(patientMigrationRequest.getBundleResource(), Bundle.class); diff --git a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/EhrExtractHandlingIT.java b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/EhrExtractHandlingIT.java index 97f595fda..8213448a7 100644 --- a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/EhrExtractHandlingIT.java +++ b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/EhrExtractHandlingIT.java @@ -173,7 +173,7 @@ private void verifyBundle(String path) throws JSONException { var expectedBundle = readResourceAsString(path).replace(NHS_NUMBER_PLACEHOLDER, patientNhsNumber); if (OVERWRITE_EXPECTED_JSON) { - overwriteExpectJson(patientMigrationRequest.getBundleResource()); + overwriteExpectJson(path, patientMigrationRequest.getBundleResource()); } var bundle = fhirParserService.parseResource(patientMigrationRequest.getBundleResource(), Bundle.class); @@ -199,8 +199,8 @@ private void assertBundleContent(String actual, String expected, List ig } @SneakyThrows - private void overwriteExpectJson(String newExpected) { - try (PrintWriter printWriter = new PrintWriter("src/integrationTest/resources/json/expectedBundle.json", StandardCharsets.UTF_8)) { + private void overwriteExpectJson(String path, String newExpected) { + try (PrintWriter printWriter = new PrintWriter("src/integrationTest/resources/" + path, StandardCharsets.UTF_8)) { printWriter.print(newExpected); } fail("Re-run the tests with OVERWRITE_EXPECTED_JSON=false"); diff --git a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/util/BaseEhrHandler.java b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/util/BaseEhrHandler.java index e69043d12..662cb59ea 100644 --- a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/util/BaseEhrHandler.java +++ b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/util/BaseEhrHandler.java @@ -106,7 +106,7 @@ protected void verifyBundle(String path) throws JSONException { var expectedBundle = readResourceAsString(path).replace(NHS_NUMBER_PLACEHOLDER, patientNhsNumber); if (OVERWRITE_EXPECTED_JSON) { - overwriteExpectJson(patientMigrationRequest.getBundleResource()); + overwriteExpectJson(path, patientMigrationRequest.getBundleResource()); } var bundle = fhirParserService.parseResource(patientMigrationRequest.getBundleResource(), Bundle.class); @@ -118,8 +118,8 @@ protected void verifyBundle(String path) throws JSONException { } @SneakyThrows - protected void overwriteExpectJson(String newExpected) { - try (PrintWriter printWriter = new PrintWriter("src/integrationTest/resources/json/expectedBundle.json", StandardCharsets.UTF_8)) { + protected void overwriteExpectJson(String path, String newExpected) { + try (PrintWriter printWriter = new PrintWriter("src/integrationTest/resources/" + path, StandardCharsets.UTF_8)) { printWriter.print(newExpected); } fail("Re-run the tests with OVERWRITE_EXPECTED_JSON=false"); From b2971d1bbee19b4f6f9b267523c8206c2e907dd9 Mon Sep 17 00:00:00 2001 From: Adrian Clay Date: Wed, 20 Mar 2024 15:10:05 +0000 Subject: [PATCH 2/4] Regenerate expected integration tests fixtures They all seem to have a lot of reformatting needed --- .../output-json/PWTP10-output.json | 9095 ++- .../output-json/PWTP11-output.json | 11655 ++-- .../e2e-mapping/output-json/PWTP2-output.json | 21056 +++--- .../e2e-mapping/output-json/PWTP3-output.json | 5809 +- .../e2e-mapping/output-json/PWTP4-output.json | 41594 +++++------- .../e2e-mapping/output-json/PWTP5-output.json | 9096 ++- .../e2e-mapping/output-json/PWTP6-output.json | 15583 ++--- .../output-json/PWTP7_vis-output.json | 7514 +-- .../e2e-mapping/output-json/PWTP9-output.json | 37265 +++++----- .../LargeMessage/expectedBundleScenario1.json | 1160 +- .../expectedBundleScenario10.json | 24327 +++---- .../expectedBundleScenario11.json | 24327 +++---- .../LargeMessage/expectedBundleScenario2.json | 1160 +- .../LargeMessage/expectedBundleScenario3.json | 1160 +- .../LargeMessage/expectedBundleScenario4.json | 1160 +- .../LargeMessage/expectedBundleScenario5.json | 1158 +- .../LargeMessage/expectedBundleScenario6.json | 48 +- .../LargeMessage/expectedBundleScenario7.json | 1158 +- .../LargeMessage/expectedBundleScenario8.json | 1160 +- .../LargeMessage/expectedBundleScenario9.json | 1160 +- .../resources/json/expectedBundle.json | 55929 +++++++--------- 21 files changed, 118453 insertions(+), 154121 deletions(-) diff --git a/gp2gp-translator/src/integrationTest/resources/e2e-mapping/output-json/PWTP10-output.json b/gp2gp-translator/src/integrationTest/resources/e2e-mapping/output-json/PWTP10-output.json index 282950bcd..41bdc7adf 100644 --- a/gp2gp-translator/src/integrationTest/resources/e2e-mapping/output-json/PWTP10-output.json +++ b/gp2gp-translator/src/integrationTest/resources/e2e-mapping/output-json/PWTP10-output.json @@ -1,5182 +1,3985 @@ { "resourceType": "Bundle", - "id": "a86c9990-d33d-46ed-bcf8-b0fc8b249cbf", + "id": "63740791-0be9-4917-9c51-6b58d7139570", "meta": { - "profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/GPConnect-StructuredRecord-Bundle-1" - ] + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/GPConnect-StructuredRecord-Bundle-1" ] }, "type": "collection", - "entry": [ - { - "resource": { - "resourceType": "Patient", - "id": "40767a25-713d-4f77-b9ee-9019b40ca53c", - "meta": { - "versionId": "1521806400000", - "profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Patient-1" - ] - }, - "identifier": [ - { - "system": "https://fhir.nhs.uk/Id/nhs-number", - "value": "Test Harness" - } - ] - } - }, - { - "resource": { - "resourceType": "Practitioner", - "id": "C5DEFBF3-0174-BC6F-182C-B777B9C6FF43", - "meta": { - "profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Practitioner-1" - ] - }, - "name": [ - { - "use": "official", - "family": "Whitcombe", - "given": [ - "Peter" - ], - "prefix": [ - "Dr" - ] - } - ], - "identifier": [ { - "system": "https://fhir.hl7.org.uk/Id/gmp-number", - "value": "7882315" + "entry": [ { + "resource": { + "resourceType": "Patient", + "id": "54315f0e-2ad6-468d-a93a-642190b6f3b5", + "meta": { + "versionId": "1521806400000", + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Patient-1" ] + }, + "identifier": [ { + "system": "https://fhir.nhs.uk/Id/nhs-number", + "value": "Test Harness" + } ] + } + }, { + "resource": { + "resourceType": "Practitioner", + "id": "C5DEFBF3-0174-BC6F-182C-B777B9C6FF43", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Practitioner-1" ] + }, + "identifier": [ { + "system": "https://fhir.hl7.org.uk/Id/gmp-number", + "value": "7882315" + } ], + "name": [ { + "use": "official", + "family": "Whitcombe", + "given": [ "Peter" ], + "prefix": [ "Dr" ] + } ] + } + }, { + "resource": { + "resourceType": "Practitioner", + "id": "1E473786-E7FA-785E-C911-A8D38FB56F20", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Practitioner-1" ] + }, + "identifier": [ { + "system": "https://fhir.hl7.org.uk/Id/gmp-number", + "value": "7889233" + } ], + "name": [ { + "use": "official", + "family": "McAvenue", + "given": [ "David" ], + "prefix": [ "Dr" ] + } ] + } + }, { + "resource": { + "resourceType": "Encounter", + "id": "0D68809F-354F-44BF-84AC-F69995369638", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Encounter-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "0D68809F-354F-44BF-84AC-F69995369638" + } ], + "status": "finished", + "type": [ { + "coding": [ { + "extension": [ { + "url": "https://fhir.nhs.uk/STU3/StructureDefinition/Extension-coding-sctdescid", + "extension": [ { + "url": "descriptionDisplay", + "valueString": "Surgery Consultation Note" + } ] + } ], + "system": "http://snomed.info/sct", + "code": "25671000000102", + "display": "Surgery consultation note" + } ], + "text": "GP Surgery" + } ], + "subject": { + "reference": "Patient/54315f0e-2ad6-468d-a93a-642190b6f3b5" + }, + "participant": [ { + "type": [ { + "coding": [ { + "system": "https://fhir.nhs.uk/STU3/CodeSystem/GPConnect-ParticipantType-1", + "code": "REC", + "display": "recorder" + } ] + } ], + "individual": { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } + }, { + "type": [ { + "coding": [ { + "system": "http://hl7.org/fhir/v3/ParticipationType", + "code": "PPRF", + "display": "primary performer" + } ] + } ], + "individual": { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } + } ], + "period": { + "start": "2009-09-30T07:45:00+00:00" + }, + "location": [ { + "location": { + "reference": "Location/8BE74F1B-903A-4A01-B8E3-4DB2DBC41A80" + } + } ] + } + }, { + "resource": { + "resourceType": "Encounter", + "id": "B6C42958-A107-4188-9A9B-6D58AB25A657", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Encounter-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "B6C42958-A107-4188-9A9B-6D58AB25A657" + } ], + "status": "finished", + "type": [ { + "coding": [ { + "extension": [ { + "url": "https://fhir.nhs.uk/STU3/StructureDefinition/Extension-coding-sctdescid", + "extension": [ { + "url": "descriptionDisplay", + "valueString": "Hospital Inpatient Report" + } ] + } ], + "system": "http://snomed.info/sct", + "code": "24661000000108", + "display": "Hospital inpatient report" + } ], + "text": "Hospital inpatient report" + } ], + "subject": { + "reference": "Patient/54315f0e-2ad6-468d-a93a-642190b6f3b5" + }, + "participant": [ { + "type": [ { + "coding": [ { + "system": "https://fhir.nhs.uk/STU3/CodeSystem/GPConnect-ParticipantType-1", + "code": "REC", + "display": "recorder" + } ] + } ], + "individual": { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } + }, { + "type": [ { + "coding": [ { + "system": "http://hl7.org/fhir/v3/ParticipationType", + "code": "PPRF", + "display": "primary performer" + } ] + } ], + "individual": { + "reference": "Practitioner/C5DEFBF3-0174-BC6F-182C-B777B9C6FF43" + } + } ], + "period": { + "start": "2010-01-04T12:54:00+00:00" + }, + "location": [ { + "location": { + "reference": "Location/8BE74F1B-903A-4A01-B8E3-4DB2DBC41A80" + } + } ] + } + }, { + "resource": { + "resourceType": "Encounter", + "id": "E92099A9-F7E9-4684-91EB-D6427F022041", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Encounter-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "E92099A9-F7E9-4684-91EB-D6427F022041" + } ], + "status": "finished", + "type": [ { + "coding": [ { + "extension": [ { + "url": "https://fhir.nhs.uk/STU3/StructureDefinition/Extension-coding-sctdescid", + "extension": [ { + "url": "descriptionDisplay", + "valueString": "Night Visit Note" + } ] + } ], + "system": "http://snomed.info/sct", + "code": "25761000000104", + "display": "Night visit note" + } ], + "text": "Night visit note" + } ], + "subject": { + "reference": "Patient/54315f0e-2ad6-468d-a93a-642190b6f3b5" + }, + "participant": [ { + "type": [ { + "coding": [ { + "system": "https://fhir.nhs.uk/STU3/CodeSystem/GPConnect-ParticipantType-1", + "code": "REC", + "display": "recorder" + } ] + } ], + "individual": { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } + }, { + "type": [ { + "coding": [ { + "system": "http://hl7.org/fhir/v3/ParticipationType", + "code": "PPRF", + "display": "primary performer" + } ] + } ], + "individual": { + "reference": "Practitioner/C5DEFBF3-0174-BC6F-182C-B777B9C6FF43" + } + } ], + "period": { + "start": "2010-01-14T13:08:00+00:00" + }, + "location": [ { + "location": { + "reference": "Location/24D816D3-73EF-4A4D-BAE2-855AF377ABD6" + } + } ] + } + }, { + "resource": { + "resourceType": "Encounter", + "id": "58488EEB-78EA-47F4-9A73-8D6836E09AAB", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Encounter-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "58488EEB-78EA-47F4-9A73-8D6836E09AAB" + } ], + "status": "finished", + "type": [ { + "coding": [ { + "extension": [ { + "url": "https://fhir.nhs.uk/STU3/StructureDefinition/Extension-coding-sctdescid", + "extension": [ { + "url": "descriptionDisplay", + "valueString": "Surgery Consultation Note" + } ] + } ], + "system": "http://snomed.info/sct", + "code": "25671000000102", + "display": "Surgery consultation note" + } ], + "text": "GP Surgery" + } ], + "subject": { + "reference": "Patient/54315f0e-2ad6-468d-a93a-642190b6f3b5" + }, + "participant": [ { + "type": [ { + "coding": [ { + "system": "https://fhir.nhs.uk/STU3/CodeSystem/GPConnect-ParticipantType-1", + "code": "REC", + "display": "recorder" + } ] + } ], + "individual": { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } + }, { + "type": [ { + "coding": [ { + "system": "http://hl7.org/fhir/v3/ParticipationType", + "code": "PPRF", + "display": "primary performer" + } ] + } ], + "individual": { + "reference": "Practitioner/C5DEFBF3-0174-BC6F-182C-B777B9C6FF43" + } + } ], + "period": { + "start": "2010-02-04T08:47:00+00:00" + }, + "location": [ { + "location": { + "reference": "Location/24D816D3-73EF-4A4D-BAE2-855AF377ABD6" + } + } ] + } + }, { + "resource": { + "resourceType": "Encounter", + "id": "81A3B881-FE23-4346-A7ED-48ED539E9054", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Encounter-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "81A3B881-FE23-4346-A7ED-48ED539E9054" + } ], + "status": "finished", + "type": [ { + "coding": [ { + "extension": [ { + "url": "https://fhir.nhs.uk/STU3/StructureDefinition/Extension-coding-sctdescid", + "extension": [ { + "url": "descriptionDisplay", + "valueString": "Home Visit Note" + } ] + } ], + "system": "http://snomed.info/sct", + "code": "25651000000106", + "display": "Home visit note" + } ], + "text": "Home visit note" + } ], + "subject": { + "reference": "Patient/54315f0e-2ad6-468d-a93a-642190b6f3b5" + }, + "participant": [ { + "type": [ { + "coding": [ { + "system": "https://fhir.nhs.uk/STU3/CodeSystem/GPConnect-ParticipantType-1", + "code": "REC", + "display": "recorder" + } ] + } ], + "individual": { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } + }, { + "type": [ { + "coding": [ { + "system": "http://hl7.org/fhir/v3/ParticipationType", + "code": "PPRF", + "display": "primary performer" + } ] + } ], + "individual": { + "reference": "Practitioner/C5DEFBF3-0174-BC6F-182C-B777B9C6FF43" + } + } ], + "period": { + "start": "2010-02-06T12:41:00+00:00" + }, + "location": [ { + "location": { + "reference": "Location/24D816D3-73EF-4A4D-BAE2-855AF377ABD6" + } + } ] + } + }, { + "resource": { + "resourceType": "Encounter", + "id": "3995C975-2435-4AEC-AA26-7FF40D751E48", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Encounter-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "3995C975-2435-4AEC-AA26-7FF40D751E48" + } ], + "status": "finished", + "type": [ { + "coding": [ { + "extension": [ { + "url": "https://fhir.nhs.uk/STU3/StructureDefinition/Extension-coding-sctdescid", + "extension": [ { + "url": "descriptionId", + "valueId": "87941000000117" + }, { + "url": "descriptionDisplay", + "valueString": "Administration note" + } ] + } ], + "system": "http://snomed.info/sct", + "code": "37351000000107", + "display": "Administration note" + } ], + "text": "Administration note" + } ], + "subject": { + "reference": "Patient/54315f0e-2ad6-468d-a93a-642190b6f3b5" + }, + "participant": [ { + "type": [ { + "coding": [ { + "system": "https://fhir.nhs.uk/STU3/CodeSystem/GPConnect-ParticipantType-1", + "code": "REC", + "display": "recorder" + } ] + } ], + "individual": { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } + }, { + "type": [ { + "coding": [ { + "system": "http://hl7.org/fhir/v3/ParticipationType", + "code": "PPRF", + "display": "primary performer" + } ] + } ], + "individual": { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } + } ], + "period": { + "start": "2010-02-06T12:52:00+00:00" + }, + "location": [ { + "location": { + "reference": "Location/8BE74F1B-903A-4A01-B8E3-4DB2DBC41A80" + } + } ] + } + }, { + "resource": { + "resourceType": "Encounter", + "id": "0D27AD4C-6CC6-4743-965A-B0F2A020C2FD", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Encounter-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "0D27AD4C-6CC6-4743-965A-B0F2A020C2FD" + } ], + "status": "finished", + "type": [ { + "coding": [ { + "extension": [ { + "url": "https://fhir.nhs.uk/STU3/StructureDefinition/Extension-coding-sctdescid", + "extension": [ { + "url": "descriptionDisplay", + "valueString": "Residential Home Visit Note" + } ] + } ], + "system": "http://snomed.info/sct", + "code": "24631000000103", + "display": "Residential home visit note" + } ], + "text": "Residential home visit note" + } ], + "subject": { + "reference": "Patient/54315f0e-2ad6-468d-a93a-642190b6f3b5" + }, + "participant": [ { + "type": [ { + "coding": [ { + "system": 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"http://read.info/readv2", - "code": "N040.00", - "display": "Rheumatoid arthritis" - }, - { - "extension": [ - { - "url": "https://fhir.nhs.uk/STU3/StructureDefinition/Extension-coding-sctdescid", - "extension": [ - { - "url": "descriptionId", - "valueId": "116082011" - }, - { - "url": "descriptionDisplay", - "valueString": "Rheumatoid arthritis" - } - ] - } - ], - "system": "http://snomed.info/sct", - "code": "69896004", - "display": "Rheumatoid arthritis" - } - ], - "text": "Rheumatoid arthritis" - }, - "subject": { - "reference": "Patient/c782c5ef-8235-4acf-945b-268a1bbe9d64" - }, - "context": { - "reference": "Encounter/76102D2A-8898-4EE3-B0C5-72FC95F93BB0" - }, - "effectiveDateTime": "2010-03-23T07:59:00+00:00", - "issued": "2010-03-24T09:00:00.000+00:00", - "performer": [ - { - "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" - } - ], - "comment": "This is the third problem {Episodicity : code=255217005, displayName=First}" - } - }, - { - "resource": { - 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}, - { - "url": "descriptionDisplay", - "valueString": "FH: Asthma" - } - ] - } - ], - "system": "http://snomed.info/sct", - "code": "160377001", - "display": "Family history of asthma" - } - ], - "text": "FH: Asthma" - }, - "subject": { - "reference": "Patient/c782c5ef-8235-4acf-945b-268a1bbe9d64" - }, - "context": { - "reference": "Encounter/76102D2A-8898-4EE3-B0C5-72FC95F93BB0" - }, - "effectiveDateTime": "2010-03-23T07:59:00+00:00", - "issued": "2010-03-24T09:00:00.000+00:00", - "performer": [ - { - "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" - } - ], - "comment": "Subject: Father" - } - }, - { - "resource": { - "resourceType": "Observation", - "id": "6425BF18-DCB5-4776-987B-A73F6DCEFCCB", - "meta": { - "profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" - ] - }, - "identifier": [ - { - "system": "https://PSSAdaptor/B83002", - "value": "6425BF18-DCB5-4776-987B-A73F6DCEFCCB" - } - ], - "status": "final", - "code": { - "coding": [ - { - "system": "http://read.info/readv2", - "code": "K05..00", - "display": "Chronic renal failure" - }, - { - "extension": [ - { - "url": "https://fhir.nhs.uk/STU3/StructureDefinition/Extension-coding-sctdescid", - "extension": [ - { - "url": "descriptionId", - "valueId": "509111010" - }, - { - "url": "descriptionDisplay", - "valueString": "Chronic renal failure" - } - ] - } - ], - "system": "http://snomed.info/sct", - "code": "90688005", - "display": "Chronic renal failure" - } - ], - "text": "Chronic renal failure" - }, - "subject": { - "reference": "Patient/c782c5ef-8235-4acf-945b-268a1bbe9d64" - }, - "context": { - "reference": "Encounter/22A00924-FCA4-4B32-9588-5BBC1145AAB0" - }, - "effectiveDateTime": "2010-03-23T13:46:00+00:00", - "issued": "2010-03-23T15:02:28.000+00:00", - "performer": [ - { - "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" - } - ], - "comment": "Going to delete and replace this problem with something else, (Replaced Chronic 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"Chronic renal failure" + } ] + } ], + "system": "http://snomed.info/sct", + "code": "90688005", + "display": "Chronic renal failure" + } ], + "text": "Chronic renal failure" + }, + "subject": { + "reference": "Patient/2c012399-7a3b-40ee-a54a-60dc14f8e2e5" + }, + "context": { + "reference": "Encounter/22A00924-FCA4-4B32-9588-5BBC1145AAB0" + }, + "effectiveDateTime": "2010-03-23T13:46:00+00:00", + "issued": "2010-03-23T15:02:28.000+00:00", + "performer": [ { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } ], + "comment": "Going to delete and replace this problem with something else, (Replaced Chronic sinusitis)" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "669ED960-D7B7-453D-9C4E-6EF22AA481F0", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "669ED960-D7B7-453D-9C4E-6EF22AA481F0" + } ], + "status": "final", 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"display": "FH: Hypertension" + } ], + "text": "FH: Hypertension" + }, + "subject": { + "reference": "Patient/2c012399-7a3b-40ee-a54a-60dc14f8e2e5" + }, + "context": { + "reference": "Encounter/12F40565-E231-449D-ABE1-803ECEB7FAEA" + }, + "effectiveDateTime": "2010-03-24", + "issued": "2010-03-24T09:04:28.000+00:00", + "performer": [ { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } ], + "comment": "Subject: Sister" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "441BC997-E06B-49D7-B453-7449F8D46A54", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "441BC997-E06B-49D7-B453-7449F8D46A54" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://read.info/readv2", + "code": "C34..00", + "display": "Gout" + }, { + "extension": [ { + "url": 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only confidentiality" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "231BE809-3D7C-4C4C-8F78-D9D25A635C9D", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "231BE809-3D7C-4C4C-8F78-D9D25A635C9D" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/61b3f949-ba8b-478b-802d-d42a49653ffc" + }, + "context": { + "reference": "Encounter/F9ADFA5F-A4D0-469D-B22F-2F1787DD7F05" + }, + "effectiveDateTime": "2010-01-13T11:48:00+00:00", + "issued": "2010-01-13T11:42:01.000+00:00", + "performer": [ { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } ], + "comment": "This consultation has Clinician Only Confidentiality" + } + }, { + "resource": { + "resourceType": "Observation", + 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text with a line break at the end.\n 4.This is a line of text with a line break at the end.\n\n The Line above this one was blank (with a line break)\n\n This is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this is a long line, this 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ThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesThisIsALongLineWithoutSpacesENDOFTEXT\n\n The line below contains special characters...\n ¬`1234567890!\"£$%^&*()_+=-{}][~@#':;<>?,./|\\" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "549EA74D-C2C1-498E-8E67-DF660977A6A1", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "549EA74D-C2C1-498E-8E67-DF660977A6A1" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/61b3f949-ba8b-478b-802d-d42a49653ffc" + }, + "context": { + "reference": "Encounter/9B69F6AE-F991-49EE-9FFD-028E39B38BFE" + }, + "effectiveDateTime": "2010-01-23T13:48:00+00:00", + "issued": "2010-01-23T14:03:54.000+00:00", + "performer": [ { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } ], + "comment": "This is some random free text" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "9FE606B5-2A63-4D66-B132-DED52014A0EA", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "9FE606B5-2A63-4D66-B132-DED52014A0EA" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/61b3f949-ba8b-478b-802d-d42a49653ffc" + }, + "context": { + "reference": "Encounter/D81C5E8F-CB3A-4A78-92EA-51EC3665648E" + }, + "effectiveDateTime": "2010-06-09", + "issued": "2010-06-09T16:51:21.000+00:00", + "performer": [ { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } ], + "comment": "Quick Note Clinical Purpose: Child Health\n hhhhhhhhh" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "FBC7039B-FA0E-4598-9C29-FF2E4C38D197", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "FBC7039B-FA0E-4598-9C29-FF2E4C38D197" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/61b3f949-ba8b-478b-802d-d42a49653ffc" + }, + "context": { + "reference": "Encounter/8FEB11AA-5785-43D3-99A9-E9D49EAF2161" + }, + "effectiveDateTime": "2010-06-10T07:22:00+00:00", + "issued": "2010-06-10T07:19:25.000+00:00", + "performer": [ { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } ], + "comment": "This is kjkjkjkjkjkjkjkjkj" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "A405C758-B5DF-4793-AEE8-040B2406B164", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "A405C758-B5DF-4793-AEE8-040B2406B164" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/61b3f949-ba8b-478b-802d-d42a49653ffc" + }, + "context": { + "reference": "Encounter/4088F3A1-CE58-4374-AABA-763C31738281" + }, + "effectiveDateTime": "2010-07-14T16:55:00+00:00", + "issued": "2010-07-14T15:28:13.000+00:00", + "performer": [ { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } ], + "comment": "This is the BP reading in a consultation with a note" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "E5DC2C05-7DCE-4E95-8E09-5605277B0B85", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "E5DC2C05-7DCE-4E95-8E09-5605277B0B85" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/61b3f949-ba8b-478b-802d-d42a49653ffc" + }, + "effectiveDateTime": "2010-07-14", + "issued": "2010-07-14T15:27:49.000+00:00", + "performer": [ { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } ], + "comment": "This is the standalone BP" } - ] + } ] } \ No newline at end of file diff --git a/gp2gp-translator/src/integrationTest/resources/e2e-mapping/output-json/PWTP3-output.json b/gp2gp-translator/src/integrationTest/resources/e2e-mapping/output-json/PWTP3-output.json index 8066cded7..aab3f404c 100644 --- a/gp2gp-translator/src/integrationTest/resources/e2e-mapping/output-json/PWTP3-output.json +++ b/gp2gp-translator/src/integrationTest/resources/e2e-mapping/output-json/PWTP3-output.json @@ -1,3329 +1,2520 @@ { "resourceType": "Bundle", - "id": "9968e10a-1429-4a5c-a369-7a0f1b221010", + "id": "d2712609-4672-4303-a1fc-19fead90ab44", "meta": { - "profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/GPConnect-StructuredRecord-Bundle-1" - ] + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/GPConnect-StructuredRecord-Bundle-1" ] }, "type": "collection", - "entry": [ - { - "resource": { - "resourceType": "Patient", - "id": "e098674d-9b6b-49b8-bd32-d0bdab4491a6", - "meta": { - "versionId": "1521806400000", - "profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Patient-1" - ] - }, - "identifier": [ - { - "system": "https://fhir.nhs.uk/Id/nhs-number", - "value": "Test Harness" - } - ] - } - }, - { - "resource": { - "resourceType": "Practitioner", - "id": "C5DEFBF3-0174-BC6F-182C-B777B9C6FF43", - "meta": { - "profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Practitioner-1" - ] - }, - "name": [ - { - "use": "official", - "family": "Whitcombe", - 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There are 4 blank lines (with LB/CR above this one) This is the last line of this note." - } - }, - { - "resource": { - "resourceType": "Observation", - "id": "B5047285-2CF6-47FE-BDBC-45BB40542264", - "meta": { - "profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" - ] - }, - "identifier": [ - { - "system": "https://PSSAdaptor/B83002", - "value": "B5047285-2CF6-47FE-BDBC-45BB40542264" - } - ], - "status": "final", - "code": { - "coding": [ - { - "system": "http://snomed.info/sct", - "code": "37331000000100", - "display": "Comment note" - } - ] - }, - "subject": { - "reference": "Patient/b7caa39d-5ecd-4d93-b0c7-535ee44a491c" - }, - "context": { - "reference": "Encounter/A1C8AD7F-99E6-4EED-B102-362D3961D2AF" - }, - "effectiveDateTime": "2010-01-18T09:42:00+00:00", - "issued": "2010-01-18T11:02:28.000+00:00", - "performer": [ - { - "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" - } - ], - "comment": "Quick Note Clinical Purpose: Assessment ANSI Characters: Regular: a b c d e f g h i j k l m n o p q r s t u v w x y z 1 2 3 4 5 6 7 8 9 0 Miscellaneous: \" ( ) [ ] { } ~ : ; , . ? ¿ ! ¡ @ # £ $ ¢ ¤ ° ¯ ¶ © ® ™ ¦ † ‡ & * _ ' \\ « ‹ › » § Mathematical: ± + - × ÷ ¼ ½ ¾ ² ³ ¬ %<> / | µ Other Languages: Á á à Æ æ Þ è é É ç Ç ß Ì Í ý ë" - } - }, - { - "resource": { - "resourceType": "Observation", - "id": "F048A43D-290E-4AE5-A001-CFED841CEF82", - "meta": { - "profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" - ] - }, - "identifier": [ - { - "system": "https://PSSAdaptor/B83002", - "value": "F048A43D-290E-4AE5-A001-CFED841CEF82" - } - ], - "status": "final", - "code": { - "coding": [ - { - "system": "http://snomed.info/sct", - "code": "37331000000100", - "display": "Comment note" - } - ] - }, - "subject": { - "reference": "Patient/b7caa39d-5ecd-4d93-b0c7-535ee44a491c" - }, - "context": { - "reference": "Encounter/389A5279-93AD-4AAA-9FE7-95883FCE91B6" - }, - "effectiveDateTime": "2010-01-18T09:42:00+00:00", - "issued": "2010-01-18T11:06:58.000+00:00", - "performer": [ - { - "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" - } - ], - "comment": "Quick Note Clinical Purpose: Assessment This is a fairly standard quick note with some random words is one paragraph. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog.The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog.The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. 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This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. This is a long paragraph. 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The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog.The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog.The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog. The quick brown fox jumps over the lazy dog." + } + }, { + "resource": { + "resourceType": "Observation", + "id": "1CC3D9D7-099A-4F34-BBBF-254967C0330E", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "1CC3D9D7-099A-4F34-BBBF-254967C0330E" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/7d09f7e9-ad51-47a2-ae43-482996503627" + }, + "context": { + "reference": "Encounter/D09EBBDF-1FD3-4546-986C-6203A09D3C6D" + }, + "effectiveDateTime": "2010-01-18T09:42:00+00:00", + "issued": "2010-01-18T11:27:20.000+00:00", + "performer": [ { + "reference": "Practitioner/1E473786-E7FA-785E-C911-A8D38FB56F20" + } ], + "comment": "Quick Note Clinical Purpose: Assessment\n This is a note in a problem heading" + } + }, { + 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MELLITUS : Fasting 7.0 or above &/or", + "specimen": { + "reference": "Specimen/89E2E801-4D16-4023-8EBA-BE076D479B67" + }, + "related": [ { + "type": "derived-from", + "target": { + "reference": "Observation/F15C600B-7482-4D0E-938E-78279096DB18" + } + } ] + } + }, { + "resource": { + "resourceType": "Observation", + "id": "C254A5AF-5D3A-49B4-BAA6-81E1BA144BBA", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/B83002", + "value": "C254A5AF-5D3A-49B4-BAA6-81E1BA144BBA" + } ], + "status": "final", + "category": [ { + "coding": [ { + "system": "http://hl7.org/fhir/observation-category", + "code": "laboratory", + "display": "Laboratory" + } ] + }, { + "coding": [ { + "system": "http://hl7.org/fhir/observation-category", + "code": "laboratory", + "display": "Laboratory" + } ] + } ], + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "196411000000103", + 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"profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" - ] - }, - "identifier": [ - { - "system": "https://PSSAdaptor/D5445", - "value": "7D88CB4A-7989-42E0-901D-816DAA869D08" - } - ], - "status": "final", - "code": { - "coding": [ - { - "system": "http://snomed.info/sct", - "code": "37331000000100", - "display": "Comment note" - } - ] - }, - "subject": { - "reference": "Patient/8d5d6123-4fad-4de2-858a-632096571420" - }, - "context": { - "reference": "Encounter/26EE99BB-00FF-4596-9D8B-1D349C1D70A1" - }, - "effectiveDateTime": "2013-10-25T15:53:28+00:00", - "issued": "2013-10-25T15:53:28.000+00:00", - "performer": [ - { - "reference": "Practitioner/b785b5f2-f696-4ba2-8634-49de74cd7ea0" - } - ], - "comment": "text/plain" - } - }, - { - "resource": { - "resourceType": "Observation", - "id": "2531F667-AA89-4540-A50B-56298B13FC4C", - "meta": { - "profile": [ - "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" - ] - }, - "identifier": [ - { - "system": "https://PSSAdaptor/D5445", - "value": "2531F667-AA89-4540-A50B-56298B13FC4C" - } - ], - "status": "final", - "code": { - "coding": [ - { - "system": "http://snomed.info/sct", - "code": "37331000000100", - "display": "Comment note" - } - ] - }, - "subject": { - "reference": "Patient/8d5d6123-4fad-4de2-858a-632096571420" - }, - "context": { - "reference": "Encounter/26EE99BB-00FF-4596-9D8B-1D349C1D70A1" - }, - "effectiveDateTime": "2013-10-25T15:53:28+00:00", - "issued": "2013-10-25T15:53:28.000+00:00", - "performer": [ - { - "reference": "Practitioner/b785b5f2-f696-4ba2-8634-49de74cd7ea0" - } - ], - "comment": "video/mpeg" - } - }, - { - "resource": { - "resourceType": "Practitioner", - "id": "b785b5f2-f696-4ba2-8634-49de74cd7ea0", - "name": [ - { - "family": "Unknown User" - } - ] - } } - ] + }, { + "resource": { + "resourceType": "Observation", + "id": "FDD5D332-0468-414A-84E5-AFDAD5B37BCE", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/D5445", + "value": "FDD5D332-0468-414A-84E5-AFDAD5B37BCE" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/b26cf68e-f0b9-4021-91fa-68b1d16d984e" + }, + "context": { + "reference": "Encounter/26EE99BB-00FF-4596-9D8B-1D349C1D70A1" + }, + "effectiveDateTime": "2013-10-25T15:53:28+00:00", + "issued": "2013-10-25T15:53:28.000+00:00", + "performer": [ { + "reference": "Practitioner/18ec6b51-9668-4fd8-887d-9d8388b62a81" + } ], + "comment": "application/binary" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "7D88CB4A-7989-42E0-901D-816DAA869D08", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/D5445", + "value": "7D88CB4A-7989-42E0-901D-816DAA869D08" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/b26cf68e-f0b9-4021-91fa-68b1d16d984e" + }, + "context": { + "reference": "Encounter/26EE99BB-00FF-4596-9D8B-1D349C1D70A1" + }, + "effectiveDateTime": "2013-10-25T15:53:28+00:00", + "issued": "2013-10-25T15:53:28.000+00:00", + "performer": [ { + "reference": "Practitioner/18ec6b51-9668-4fd8-887d-9d8388b62a81" + } ], + "comment": "text/plain" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "2531F667-AA89-4540-A50B-56298B13FC4C", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/D5445", + "value": "2531F667-AA89-4540-A50B-56298B13FC4C" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/b26cf68e-f0b9-4021-91fa-68b1d16d984e" + }, + "context": { + "reference": "Encounter/26EE99BB-00FF-4596-9D8B-1D349C1D70A1" + }, + "effectiveDateTime": "2013-10-25T15:53:28+00:00", + "issued": "2013-10-25T15:53:28.000+00:00", + "performer": [ { + "reference": "Practitioner/18ec6b51-9668-4fd8-887d-9d8388b62a81" + } ], + "comment": "video/mpeg" + } + }, { + "resource": { + "resourceType": "Practitioner", + "id": "18ec6b51-9668-4fd8-887d-9d8388b62a81", + "name": [ { + "family": "Unknown User" + } ] + } + } ] } \ No newline at end of file diff --git a/gp2gp-translator/src/integrationTest/resources/json/LargeMessage/expectedBundleScenario6.json b/gp2gp-translator/src/integrationTest/resources/json/LargeMessage/expectedBundleScenario6.json index 023e5b231..3421166cc 100644 --- a/gp2gp-translator/src/integrationTest/resources/json/LargeMessage/expectedBundleScenario6.json +++ b/gp2gp-translator/src/integrationTest/resources/json/LargeMessage/expectedBundleScenario6.json @@ -1,6 +1,6 @@ { "resourceType": "Bundle", - "id": "c15e8cfe-70bf-447b-ae36-a0288c370f1b", + "id": "7a469c5b-aedc-4d75-8e0c-8dd5f4970bea", "meta": { "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/GPConnect-StructuredRecord-Bundle-1" ] }, @@ -8,14 +8,14 @@ "entry": [ { "resource": { "resourceType": "Patient", - "id": "7532b7ba-d625-4414-9659-bed259568a06", + "id": "d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6", "meta": { "versionId": "1521806400000", "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Patient-1" ] }, "identifier": [ { "system": "https://fhir.nhs.uk/Id/nhs-number", - "value": "2810032991" + "value": "1711327283" } ], "managingOrganization": { "reference": "Organization/0B98DC27-535D-4BC1-A99F-AA5880A446E1" @@ -24,7 +24,7 @@ }, { "resource": { "resourceType": "Organization", - "id": "5f72b7c8-6316-4b85-8e6f-abfd78eb939b", + "id": "689baf0d-96a1-41aa-98f3-2f737a2106d3", "meta": { "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Organization-1" ] }, @@ -128,7 +128,7 @@ "text": "Other" } ], "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "participant": [ { "type": [ { @@ -176,7 +176,7 @@ } ] }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "encounter": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -213,7 +213,7 @@ } ] }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "encounter": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -254,7 +254,7 @@ } ] }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "encounter": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -323,7 +323,7 @@ } ] }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "encounter": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -381,7 +381,7 @@ "text": "O/E - height" }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -438,7 +438,7 @@ "text": "O/E - weight" }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -495,7 +495,7 @@ "text": "Alcohol consumption" }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -557,7 +557,7 @@ "text": "Stopped smoking" }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -613,7 +613,7 @@ "text": "O/E - Systolic BP reading" }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -675,7 +675,7 @@ "text": "O/E - Diastolic BP reading" }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -737,7 +737,7 @@ "text": "Other Attachment" }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "created": "2018-06-12", "indexed": "2018-06-12T08:24:07.000+00:00", @@ -745,12 +745,12 @@ "reference": "Practitioner/FC4889C6-50CD-4DC1-9FE2-961BAA81DBBC" } ], "custodian": { - "reference": "Organization/5f72b7c8-6316-4b85-8e6f-abfd78eb939b" + "reference": "Organization/689baf0d-96a1-41aa-98f3-2f737a2106d3" }, "content": [ { "attachment": { "contentType": "image/tiff", - "url": "B74E7CAA-D292-4B9A-8EDE-1333D392174A_588210BB-401D-41F9-84D2-978697CEEFE5_00011000.tif", + "url": "83648F02-6293-4FE4-B06A-19CA4B921524_588210BB-401D-41F9-84D2-978697CEEFE5_00011000.tif", "size": 36504 } } ], @@ -799,7 +799,7 @@ "text": "Alcohol consumption" }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -852,7 +852,7 @@ "text": "Ex smoker" }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -908,7 +908,7 @@ "text": "O/E - blood pressure reading" }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -950,7 +950,7 @@ } ] }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -982,7 +982,7 @@ } ] }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" @@ -1014,7 +1014,7 @@ } ] }, "subject": { - "reference": "Patient/7532b7ba-d625-4414-9659-bed259568a06" + "reference": "Patient/d05e3e3f-d0e4-4c1f-9a84-d7fd94fb45a6" }, "context": { "reference": "Encounter/3B96CB3A-14C2-4FB3-823E-04A7D86BC123" diff --git a/gp2gp-translator/src/integrationTest/resources/json/LargeMessage/expectedBundleScenario7.json b/gp2gp-translator/src/integrationTest/resources/json/LargeMessage/expectedBundleScenario7.json index 0ba446d11..2f512b4f2 100644 --- a/gp2gp-translator/src/integrationTest/resources/json/LargeMessage/expectedBundleScenario7.json +++ b/gp2gp-translator/src/integrationTest/resources/json/LargeMessage/expectedBundleScenario7.json @@ -1,682 +1,522 @@ { "resourceType": "Bundle", - "id": "50acc8bd-fd3e-4086-a545-b66674d835ac", + "id": 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"Encounter/9FB8560B-A7FF-4F04-9E0B-CFBB4D0AF4E9" + }, + "issued": "2010-01-13T15:13:32.000+00:00", + "performer": [ { + "reference": "Practitioner/70555A33-0550-405D-BB67-E9805440B38C" + } ], + "comment": " This should not be a part of Battery Observation.comment", + "related": [ { + "type": "derived-from", + "target": { + "reference": "Observation/OBSERVATION_STATEMENT_ID" + } + } ] + } + }, { + "resource": { + "resourceType": "Observation", + "id": "2E74473E-F3B1-407C-BE95-93547917B6E4", + "meta": { + "profile": [ "https://fhir.nhs.uk/STU3/StructureDefinition/CareConnect-GPC-Observation-1" ] + }, + "identifier": [ { + "system": "https://PSSAdaptor/D5445", + "value": "2E74473E-F3B1-407C-BE95-93547917B6E4" + } ], + "status": "final", + "code": { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "37331000000100", + "display": "Comment note" + } ] + }, + "subject": { + "reference": "Patient/14aab2d4-8ae9-4a56-8878-397824e1d741" + }, + "context": { + "reference": 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"https://fhir.nhs.uk/STU3/StructureDefinition/Extension-coding-sctdescid", + "extension": [ { + "url": "descriptionId", + "valueId": "2564081000000118" + }, { + "url": "descriptionDisplay", + "valueString": "Urine pregnancy test" + } ] + } ], + "system": "http://snomed.info/sct", + "code": "1003161000000106", + "display": "Urine pregnancy test" + } ], + "text": "Urine pregnancy test" + }, + "subject": { + "reference": "Patient/14aab2d4-8ae9-4a56-8878-397824e1d741" + }, + "context": { + "reference": "Encounter/9FB8560B-A7FF-4F04-9E0B-CFBB4D0AF4E9" + }, + "effectiveDateTime": "2010-02-23T00:00:00+00:00", + "issued": "2010-01-13T15:13:32.000+00:00", + "performer": [ { + "reference": "Practitioner/70555A33-0550-405D-BB67-E9805440B38C" + } ], + "comment": " Looks like Covid", + "specimen": { + "reference": "Specimen/1277BE3-481B-4254-AA8E-17B2529244B6" + }, + "related": [ { + "type": "has-member", + "target": { + "reference": "Observation/BATTERY_DIRECT_CHILD_OBSERVATION_STATEMENT" + } + }, { + "type": "has-member", + "target": { + "reference": "Observation/OBSERVATION_STATEMENT_ID" + } + } ] + } + } ] } \ No newline at end of file From fe3032d8b5f55795bf3d20c06d0411fccddd1d2b Mon Sep 17 00:00:00 2001 From: Adrian Clay Date: Wed, 20 Mar 2024 15:13:58 +0000 Subject: [PATCH 3/4] Refactor OVERWRITE_EXPECTED_JSON so there is a single variable instead of 3 --- .../java/uk/nhs/adaptors/pss/translator/E2EMappingIT.java | 1 - .../uk/nhs/adaptors/pss/translator/EhrExtractHandlingIT.java | 2 +- .../java/uk/nhs/adaptors/pss/util/BaseEhrHandler.java | 2 +- 3 files changed, 2 insertions(+), 3 deletions(-) diff --git a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/E2EMappingIT.java b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/E2EMappingIT.java index 9e4ba6f49..38866d80a 100644 --- a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/E2EMappingIT.java +++ b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/E2EMappingIT.java @@ -39,7 +39,6 @@ @AutoConfigureMockMvc public class E2EMappingIT extends BaseEhrHandler { - private static final boolean OVERWRITE_EXPECTED_JSON = false; private static final String PSS_ADAPTOR_URL = "https://PSSAdaptor/"; private static final String EBXML_PART_PATH = "/xml/RCMR_IN030000UK06/ebxml_part.xml"; //these are programming language special characters, not to be confused with line endings diff --git a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/EhrExtractHandlingIT.java b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/EhrExtractHandlingIT.java index 8213448a7..0b280c2ca 100644 --- a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/EhrExtractHandlingIT.java +++ b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/translator/EhrExtractHandlingIT.java @@ -7,6 +7,7 @@ import static uk.nhs.adaptors.common.util.FileUtil.readResourceAsString; import static uk.nhs.adaptors.common.enums.MigrationStatus.EHR_EXTRACT_REQUEST_ACCEPTED; import static uk.nhs.adaptors.common.enums.MigrationStatus.MIGRATION_COMPLETED; +import static uk.nhs.adaptors.pss.util.BaseEhrHandler.OVERWRITE_EXPECTED_JSON; import static uk.nhs.adaptors.pss.util.JsonPathIgnoreGeneratorUtil.generateJsonPathIgnores; import java.io.PrintWriter; @@ -49,7 +50,6 @@ @AutoConfigureMockMvc public class EhrExtractHandlingIT { - private static final boolean OVERWRITE_EXPECTED_JSON = false; private static final int NHS_NUMBER_MIN_MAX_LENGTH = 10; private static final String EBXML_PART_PATH = "/xml/RCMR_IN030000UK06/ebxml_part.xml"; private static final String NHS_NUMBER_PLACEHOLDER = "{{nhsNumber}}"; diff --git a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/util/BaseEhrHandler.java b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/util/BaseEhrHandler.java index 662cb59ea..e71d93901 100644 --- a/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/util/BaseEhrHandler.java +++ b/gp2gp-translator/src/integrationTest/java/uk/nhs/adaptors/pss/util/BaseEhrHandler.java @@ -37,7 +37,7 @@ @Getter public abstract class BaseEhrHandler { - private static final boolean OVERWRITE_EXPECTED_JSON = false; + public static final boolean OVERWRITE_EXPECTED_JSON = false; private List ignoredJsonPaths; private static final int NHS_NUMBER_MIN_MAX_LENGTH = 10; From 93e2c63d44f73456e4fac8f3e086a7623f355e92 Mon Sep 17 00:00:00 2001 From: Adrian Clay Date: Wed, 20 Mar 2024 15:18:58 +0000 Subject: [PATCH 4/4] Document the OVERWRITE_EXPECTED_JSON within the README --- gp2gp-translator/README.md | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/gp2gp-translator/README.md b/gp2gp-translator/README.md index eab031120..5f70fd491 100644 --- a/gp2gp-translator/README.md +++ b/gp2gp-translator/README.md @@ -19,16 +19,23 @@ communication with the incumbent system via MHS Adaptor and data cleanup. ``` ### How to run integration tests: -*Integration tests require running database and queue. Make sure GP2GP Translator application is off, -because if it's not, it will steal the message from the MHS Queue before the application started by tests have a chance to grab it.* + +Integration tests require running database and queue. +Make sure GP2GP Translator application is off, because if it's not, it will steal the message from the `inbound` queue +before the application started by tests have a chance to grab it. Running tests form the terminal: ```shell script ./gradlew integrationTest ``` + You can also run tests from IntelliJ, just remember to set the database password inside the `gp2gp-translator/src/integrationTest/resources/application.yml` file (or set GP2GP_TRANSLATOR_USER_DB_PASSWORD variable). +If your get lots of integration tests failures within the fixtures you can set the `BaseEhrHandler.OVERWRITE_EXPECTED_JSON` +to `true` to regenerate them. +Once regenerated, review the changes made using `git diff` or similar. + ## Troubleshooting ### gradle-wrapper.jar doesn't exist