Activity
add subworkflow
add subworkflow
Fixes #371. Resumes contamination and intensity_check per BCF entry_p…
Fixes #371. Resumes contamination and intensity_check per BCF entry_p…
Fixes #370. Skips samples that fail GTC creation.
Fixes #370. Skips samples that fail GTC creation.
Updates gtc2vcf which includes Omni5Exome fix.
Updates gtc2vcf which includes Omni5Exome fix.
Appends --use-envmodules
to the snakemake CLI by default.
Appends
--use-envmodules
to the snakemake CLI by default.Force push
docs: corrects the read_genome
doctring that it reads IID1,IID2 not…
docs: corrects the
read_genome
doctring that it reads IID1,IID2 not…Revises chunk_size in read_genome to 100000.
Revises chunk_size in read_genome to 100000.
docs: updates docstring for read_genome.
docs: updates docstring for read_genome.
Reduces memory usage for plink rule genome.
Reduces memory usage for plink rule genome.
Downgrades the resources needed for sample_concordance_plink based on…
Downgrades the resources needed for sample_concordance_plink based on…
Uses workflow.cores
variable to define threads in select rules.
Uses
workflow.cores
variable to define threads in select rules.Adds an IDAT entry_point which converts idat2gtc.
Adds an IDAT entry_point which converts idat2gtc.
deploy: 48dd35f
deploy: 48dd35f
Merge pull request #356 from NCI-CGR/issue_349
Merge pull request #356 from NCI-CGR/issue_349
Pull request merge
fix .nosex missing issue
fix .nosex missing issue
deploy: 6e06c19
deploy: 6e06c19
Deleted branch
Revert "report: Remove the sentence about low replicate concordance (…
Revert "report: Remove the sentence about low replicate concordance (…
deploy: a45716c
deploy: a45716c