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ChemicalEntity (PUBCHEM:644073) <related_to> BiologicalProcessOrActivity, Gene, Pathway <related_to> DiseaseOrPhenotypicFeature (MONDO:000235) #187

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sstemann opened this issue Apr 4, 2022 · 1 comment

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@sstemann
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sstemann commented Apr 4, 2022

Query: bupeDental.json
PK: 8c6ea099-d82e-46b4-807f-c57fde291736

Looking for ideas of how to represent oral PH

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@colleenXu
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colleenXu commented Apr 5, 2022

Does "oral pH" refer to acidity in the mouth (like saliva acidity)? I found these two terms related to saliva pH measurements, with x-refs to LOINC codes. However, I'm not sure how many knowledge sources would have these terms...pH:LsCnc:Pt:Saliva:Qn and pH | Saliva | Chemistry - non-challenge


I tried browsing this topic...It seemed like there was a lack of information + a bunch of reasoning that I'm not sure this tool could handle:

  • I could only find very limited info on how acidic Buprenorphine is
  • I'm using a bunch of reasoning that I'm not sure this tool can use.
    • context of taking sublingual buprenorphine: it seems to involve holding it in the mouth for several min - 15 min. And patients were supposedly told not to drink for 15-30 min after taking it (vs rinsing the mouth right after would help if it was very acidic)
    • what side effects are occurring more in patients taking sublingual Buprenorphine vs other routes of administration (ones used for long-term treatment...oral?)? The xerostomia (less saliva / dry mouth) likely occurs in both cases, but the "exposing the inside of the mouth to probably-acidic stuff for a long time" happens only with the sublingual...
    • related to the above point, how do we tell apart stuff that happens "due to xerostomia" vs what happens with "long term exposure to acidic stuff"?
    • Are the side effects of sublingual buprenorphine similar to that of other conditions that expose the inside of the mouth to "acidic stuff" for a long time? Those conditions include GERD, stuff with vomiting (bulimia, chronic alcoholism, even pregnancy), and stuff like "drinking lots of soda".

Another aside: There's a lot of terms related to symptoms that could be used in queries:

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