diff --git a/dgidb/openapi.yml b/dgidb/openapi.yml index e54827b3..2b7c862e 100644 --- a/dgidb/openapi.yml +++ b/dgidb/openapi.yml @@ -632,13 +632,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","activator"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -647,6 +644,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:activator outputs: - id: NCBIGene semantic: Gene @@ -671,13 +669,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","activator"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -686,6 +681,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:activator outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -710,13 +706,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","agonist"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -725,6 +718,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:agonist outputs: - id: NCBIGene semantic: Gene @@ -750,13 +744,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","agonist"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -765,6 +756,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:agonist outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -789,13 +781,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","allosteric_modulator"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -804,6 +793,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:allosteric_modulator outputs: - id: NCBIGene semantic: Gene @@ -824,13 +814,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","allosteric_modulator"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -839,6 +826,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:allosteric_modulator outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -861,13 +849,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","antagonist"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -876,6 +861,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:antagonist outputs: - id: NCBIGene semantic: Gene @@ -900,13 +886,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","antagonist"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -915,6 +898,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:antagonist outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -939,13 +923,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","antibody"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -954,6 +935,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:antibody outputs: - id: NCBIGene semantic: Gene @@ -973,13 +955,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","antibody"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -988,6 +967,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:antibody outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -1010,13 +990,10 @@ components: # inputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","antisense_oligonucleotide"]') }} ], - # "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: subject.CHEMBL_COMPOUND # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1025,6 +1002,7 @@ components: # fields: >- # object.NCBIGene,association.pmids # size: 1000 + # filter: association.interaction_types:antisense_oligonucleotide # outputs: # - id: NCBIGene # semantic: Gene @@ -1047,13 +1025,10 @@ components: # inputs: # - id: NCBIGene # semantic: Gene - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","antisense_oligonucleotide"]') }} ], - # "scopes": ["object.NCBIGene", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: object.NCBIGene # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1062,6 +1037,7 @@ components: # fields: >- # subject.CHEMBL_COMPOUND,association.pmids # size: 1000 + # filter: association.interaction_types:antisense_oligonucleotide # outputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule @@ -1086,13 +1062,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","blocker"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1101,6 +1074,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:blocker outputs: - id: NCBIGene semantic: Gene @@ -1127,13 +1101,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","blocker"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1142,6 +1113,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:blocker outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -1167,13 +1139,10 @@ components: # inputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","inducer"]') }} ], - # "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: subject.CHEMBL_COMPOUND # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1182,6 +1151,7 @@ components: # fields: >- # object.NCBIGene,association.pmids # size: 1000 + # filter: association.interaction_types:inducer # outputs: # - id: NCBIGene # semantic: Gene @@ -1205,13 +1175,10 @@ components: # inputs: # - id: NCBIGene # semantic: Gene - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","inducer"]') }} ], - # "scopes": ["object.NCBIGene", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: object.NCBIGene # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1219,6 +1186,8 @@ components: # # association.interaction_claim_source,association.pmids,association.interaction_types # fields: >- # subject.CHEMBL_COMPOUND,association.pmids + # size: 1000 + # filter: association.interaction_types:inducer # outputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule @@ -1242,13 +1211,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","inhibitor"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1257,6 +1223,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:inhibitor outputs: - id: NCBIGene semantic: Gene @@ -1280,13 +1247,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","inhibitor"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1295,6 +1259,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:inhibitor outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -1321,13 +1286,10 @@ components: # inputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","inhibitory_allosteric_modulator"]') }} ], - # "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: subject.CHEMBL_COMPOUND # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1336,6 +1298,7 @@ components: # fields: >- # object.NCBIGene,association.pmids # size: 1000 + # filter: association.interaction_types:inhibitory_allosteric_modulator # outputs: # - id: NCBIGene # semantic: Gene @@ -1358,13 +1321,10 @@ components: # inputs: # - id: NCBIGene # semantic: Gene - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","inhibitory_allosteric_modulator"]') }} ], - # "scopes": ["object.NCBIGene", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: object.NCBIGene # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1372,6 +1332,8 @@ components: # # association.interaction_claim_source,association.pmids,association.interaction_types # fields: >- # subject.CHEMBL_COMPOUND,association.pmids + # size: 1000 + # filter: association.interaction_types:inhibitory_allosteric_modulator # outputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule @@ -1396,13 +1358,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","inverse_agonist"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1411,6 +1370,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:inverse_agonist outputs: - id: NCBIGene semantic: Gene @@ -1433,13 +1393,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","inverse_agonist"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1448,6 +1405,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:inverse_agonist outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -1472,13 +1430,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","modulator"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1487,6 +1442,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:modulator outputs: - id: NCBIGene semantic: Gene @@ -1509,13 +1465,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","modulator"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1524,6 +1477,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:modulator outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -1547,13 +1501,10 @@ components: # inputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","negative_modulator"]') }} ], - # "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: subject.CHEMBL_COMPOUND # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1562,6 +1513,7 @@ components: # fields: >- # object.NCBIGene,association.pmids # size: 1000 + # filter: association.interaction_types:negative_modulator # outputs: # - id: NCBIGene # semantic: Gene @@ -1585,13 +1537,10 @@ components: # inputs: # - id: NCBIGene # semantic: Gene - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","negative_modulator"]') }} ], - # "scopes": ["object.NCBIGene", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: object.NCBIGene # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1599,6 +1548,8 @@ components: # # association.interaction_claim_source,association.pmids,association.interaction_types # fields: >- # subject.CHEMBL_COMPOUND,association.pmids + # size: 1000 + # filter: association.interaction_types:negative_modulator # outputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule @@ -1624,13 +1575,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","not_applicable"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1639,6 +1587,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:not_applicable outputs: - id: NCBIGene semantic: Gene @@ -1655,13 +1604,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","not_applicable"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1670,6 +1616,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:not_applicable outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -1688,13 +1635,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","partial_agonist"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1703,6 +1647,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:partial_agonist outputs: - id: NCBIGene semantic: Gene @@ -1725,13 +1670,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","partial_agonist"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1740,6 +1682,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:partial_agonist outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -1764,13 +1707,10 @@ components: inputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","positive_modulator"]') }} ], - "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.CHEMBL_COMPOUND parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1779,6 +1719,7 @@ components: fields: >- object.NCBIGene,association.pmids size: 1000 + filter: association.interaction_types:positive_modulator outputs: - id: NCBIGene semantic: Gene @@ -1802,13 +1743,10 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","positive_modulator"]') }} ], - "scopes": ["object.NCBIGene", "association.interaction_types"] - } + body: + q: "{{ queryInputs }}" + scopes: object.NCBIGene parameters: ## commenting out because data-processing / biolink-modeling issues # fields: >- @@ -1817,6 +1755,7 @@ components: fields: >- subject.CHEMBL_COMPOUND,association.pmids size: 1000 + filter: association.interaction_types:positive_modulator outputs: - id: "CHEMBL.COMPOUND" semantic: SmallMolecule @@ -1842,13 +1781,10 @@ components: # inputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","suppressor"]') }} ], - # "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: subject.CHEMBL_COMPOUND # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1857,6 +1793,7 @@ components: # fields: >- # object.NCBIGene,association.pmids # size: 1000 + # filter: association.interaction_types:suppressor # outputs: # - id: NCBIGene # semantic: Gene @@ -1880,13 +1817,10 @@ components: # inputs: # - id: NCBIGene # semantic: Gene - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","suppressor"]') }} ], - # "scopes": ["object.NCBIGene", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: object.NCBIGene # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1894,6 +1828,8 @@ components: # # association.interaction_claim_source,association.pmids,association.interaction_types # fields: >- # subject.CHEMBL_COMPOUND,association.pmids + # size: 1000 + # filter: association.interaction_types:suppressor # outputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule @@ -1919,13 +1855,10 @@ components: # inputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","vaccine"]') }} ], - # "scopes": ["subject.CHEMBL_COMPOUND", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: subject.CHEMBL_COMPOUND # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1934,6 +1867,7 @@ components: # fields: >- # object.NCBIGene,association.pmids # size: 1000 + # filter: association.interaction_types:vaccine # outputs: # - id: NCBIGene # semantic: Gene @@ -1952,13 +1886,10 @@ components: # inputs: # - id: NCBIGene # semantic: Gene - # requestBodyType: object # requestBody: - # body: >- - # { - # "q": [ {{ queryInputs | wrap( '["' , '","vaccine"]') }} ], - # "scopes": ["object.NCBIGene", "association.interaction_types"] - # } + # body: + # q: "{{ queryInputs }}" + # scopes: object.NCBIGene # parameters: # ## commenting out because data-processing / biolink-modeling issues # # fields: >- @@ -1966,6 +1897,8 @@ components: # # association.interaction_claim_source,association.pmids,association.interaction_types # fields: >- # subject.CHEMBL_COMPOUND,association.pmids + # size: 1000 + # filter: association.interaction_types:vaccine # outputs: # - id: "CHEMBL.COMPOUND" # semantic: SmallMolecule diff --git a/semmeddb/AutoGen_SEMMEDDB.ipynb b/semmeddb/AutoGen_SEMMEDDB.ipynb index c0f0ad93..32875332 100644 --- a/semmeddb/AutoGen_SEMMEDDB.ipynb +++ b/semmeddb/AutoGen_SEMMEDDB.ipynb @@ -65,8 +65,8 @@ "id": "a5ee5aac", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:07.949450Z", - "start_time": "2023-08-15T19:03:07.243627Z" + "end_time": "2023-11-01T00:02:39.127720Z", + "start_time": "2023-11-01T00:02:38.670913Z" } }, "outputs": [], @@ -116,8 +116,8 @@ "id": "73408978", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:12.472429Z", - "start_time": "2023-08-15T19:03:12.176134Z" + "end_time": "2023-11-01T00:02:41.606833Z", + "start_time": "2023-11-01T00:02:41.499166Z" } }, "outputs": [], @@ -173,8 +173,8 @@ "id": "e8150ed6", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:14.683832Z", - "start_time": "2023-08-15T19:03:14.677818Z" + "end_time": "2023-11-01T00:02:44.016288Z", + "start_time": "2023-11-01T00:02:44.010537Z" } }, "outputs": [ @@ -199,8 +199,8 @@ "id": "57d2dc4a", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:15.512891Z", - "start_time": "2023-08-15T19:03:15.503194Z" + "end_time": "2023-11-01T00:02:44.527624Z", + "start_time": "2023-11-01T00:02:44.518346Z" } }, "outputs": [ @@ -354,8 +354,8 @@ "id": "181df62c", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:26.054202Z", - "start_time": "2023-08-15T19:03:26.034977Z" + "end_time": "2023-11-01T00:02:49.390915Z", + "start_time": "2023-11-01T00:02:49.372438Z" } }, "outputs": [ @@ -418,8 +418,8 @@ "id": "2a52d0b4", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:27.031880Z", - "start_time": "2023-08-15T19:03:27.019125Z" + "end_time": "2023-11-01T00:02:50.112680Z", + "start_time": "2023-11-01T00:02:50.100473Z" } }, "outputs": [ @@ -470,8 +470,8 @@ "id": "d0dd2ed7", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:29.153970Z", - "start_time": "2023-08-15T19:03:29.147551Z" + "end_time": "2023-11-01T00:02:52.462759Z", + "start_time": "2023-11-01T00:02:52.456269Z" } }, "outputs": [ @@ -627,8 +627,8 @@ "id": "b27b5f43", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:29.968523Z", - "start_time": "2023-08-15T19:03:29.961746Z" + "end_time": "2023-11-01T00:02:55.256871Z", + "start_time": "2023-11-01T00:02:55.250502Z" } }, "outputs": [ @@ -783,8 +783,8 @@ "id": "5765d868", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:30.609698Z", - "start_time": "2023-08-15T19:03:30.603918Z" + "end_time": "2023-11-01T00:02:57.534253Z", + "start_time": "2023-11-01T00:02:57.528199Z" } }, "outputs": [ @@ -910,8 +910,8 @@ "id": "dec1bcc5", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:37.541385Z", - "start_time": "2023-08-15T19:03:37.535216Z" + "end_time": "2023-11-01T00:03:01.876607Z", + "start_time": "2023-11-01T00:03:01.870466Z" } }, "outputs": [ @@ -947,8 +947,8 @@ "id": "0ab643b0", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:38.476227Z", - "start_time": "2023-08-15T19:03:38.467554Z" + "end_time": "2023-11-01T00:03:02.630334Z", + "start_time": "2023-11-01T00:03:02.622042Z" } }, "outputs": [], @@ -973,8 +973,8 @@ "id": "b6244458", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:41.465954Z", - "start_time": "2023-08-15T19:03:41.456017Z" + "end_time": "2023-11-01T00:03:05.831879Z", + "start_time": "2023-11-01T00:03:05.822018Z" } }, "outputs": [ @@ -1034,8 +1034,8 @@ "id": "24036b97", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:43.727664Z", - "start_time": "2023-08-15T19:03:43.723872Z" + "end_time": "2023-11-01T00:03:09.121690Z", + "start_time": "2023-11-01T00:03:09.118038Z" } }, "outputs": [ @@ -1061,8 +1061,8 @@ "id": "949ccb58", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:44.419548Z", - "start_time": "2023-08-15T19:03:44.412024Z" + "end_time": "2023-11-01T00:03:09.800477Z", + "start_time": "2023-11-01T00:03:09.792534Z" } }, "outputs": [ @@ -1200,8 +1200,8 @@ "id": "d470fa70", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:47.856219Z", - "start_time": "2023-08-15T19:03:47.846517Z" + "end_time": "2023-11-01T00:03:13.283952Z", + "start_time": "2023-11-01T00:03:13.274254Z" } }, "outputs": [ @@ -1294,8 +1294,8 @@ "id": "89c14528", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:49.679058Z", - "start_time": "2023-08-15T19:03:49.668620Z" + "end_time": "2023-11-01T00:03:16.916662Z", + "start_time": "2023-11-01T00:03:16.906103Z" } }, "outputs": [ @@ -1457,8 +1457,8 @@ "id": "8c8c04ce", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:52.875670Z", - "start_time": "2023-08-15T19:03:52.869660Z" + "end_time": "2023-11-01T00:03:20.458468Z", + "start_time": "2023-11-01T00:03:20.452265Z" } }, "outputs": [ @@ -1538,8 +1538,8 @@ "id": "0400e8e3", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:55.891537Z", - "start_time": "2023-08-15T19:03:55.886462Z" + "end_time": "2023-11-01T00:03:24.012577Z", + "start_time": "2023-11-01T00:03:24.007343Z" } }, "outputs": [], @@ -1569,8 +1569,8 @@ "id": "683a1f47", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:03:56.582942Z", - "start_time": "2023-08-15T19:03:56.574499Z" + "end_time": "2023-11-01T00:03:26.182766Z", + "start_time": "2023-11-01T00:03:26.174292Z" } }, "outputs": [ @@ -1716,8 +1716,8 @@ "id": "a7a170a6", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:01.118184Z", - "start_time": "2023-08-15T19:03:59.673331Z" + "end_time": "2023-11-01T00:03:32.602632Z", + "start_time": "2023-11-01T00:03:31.496557Z" } }, "outputs": [], @@ -1732,8 +1732,8 @@ "id": "4cc1fad9", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:29.309343Z", - "start_time": "2023-08-15T19:04:29.288267Z" + "end_time": "2023-11-01T00:03:33.349055Z", + "start_time": "2023-11-01T00:03:33.325528Z" } }, "outputs": [ @@ -1759,8 +1759,8 @@ "id": "c2c14436", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:30.460818Z", - "start_time": "2023-08-15T19:04:30.021579Z" + "end_time": "2023-11-01T00:03:34.381544Z", + "start_time": "2023-11-01T00:03:33.944283Z" } }, "outputs": [], @@ -1787,8 +1787,8 @@ "id": "7fb08392", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:33.490501Z", - "start_time": "2023-08-15T19:04:33.487034Z" + "end_time": "2023-11-01T00:03:38.801800Z", + "start_time": "2023-11-01T00:03:38.797553Z" } }, "outputs": [ @@ -1821,8 +1821,8 @@ "id": "22daf133", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:34.273836Z", - "start_time": "2023-08-15T19:04:34.270489Z" + "end_time": "2023-11-01T00:03:39.536838Z", + "start_time": "2023-11-01T00:03:39.533499Z" } }, "outputs": [], @@ -1837,8 +1837,8 @@ "id": "044843d6", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:35.019988Z", - "start_time": "2023-08-15T19:04:35.013537Z" + "end_time": "2023-11-01T00:03:40.314858Z", + "start_time": "2023-11-01T00:03:40.307716Z" } }, "outputs": [ @@ -2018,8 +2018,8 @@ "id": "eb7ea639", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:40.225003Z", - "start_time": "2023-08-15T19:04:40.221324Z" + "end_time": "2023-11-01T00:03:49.251495Z", + "start_time": "2023-11-01T00:03:49.247556Z" } }, "outputs": [ @@ -2058,8 +2058,8 @@ "id": "fc902a02", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:41.409975Z", - "start_time": "2023-08-15T19:04:41.403423Z" + "end_time": "2023-11-01T00:03:50.263726Z", + "start_time": "2023-11-01T00:03:50.256005Z" } }, "outputs": [ @@ -2259,8 +2259,8 @@ "id": "e641ae5c", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:45.546772Z", - "start_time": "2023-08-15T19:04:45.541888Z" + "end_time": "2023-11-01T00:03:53.969497Z", + "start_time": "2023-11-01T00:03:53.964711Z" } }, "outputs": [], @@ -2302,8 +2302,8 @@ "id": "882e7bde", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:48.499954Z", - "start_time": "2023-08-15T19:04:48.497295Z" + "end_time": "2023-11-01T00:03:57.364145Z", + "start_time": "2023-11-01T00:03:57.361050Z" } }, "outputs": [], @@ -2317,8 +2317,8 @@ "id": "f4220655", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:49.168202Z", - "start_time": "2023-08-15T19:04:49.164144Z" + "end_time": "2023-11-01T00:03:58.070864Z", + "start_time": "2023-11-01T00:03:58.067224Z" } }, "outputs": [ @@ -2363,12 +2363,12 @@ }, { "cell_type": "code", - "execution_count": 31, + "execution_count": 32, "id": "a3a9da81", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:53.447739Z", - "start_time": "2023-08-15T19:04:53.444302Z" + "end_time": "2023-08-16T00:18:25.086278Z", + "start_time": "2023-08-16T00:18:25.083033Z" } }, "outputs": [], @@ -2470,12 +2470,12 @@ }, { "cell_type": "code", - "execution_count": 32, + "execution_count": 31, "id": "8cf5b450", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:04:55.004995Z", - "start_time": "2023-08-15T19:04:55.000340Z" + "end_time": "2023-11-01T00:04:05.105709Z", + "start_time": "2023-11-01T00:04:05.101157Z" } }, "outputs": [ @@ -2501,7 +2501,7 @@ " 'sbst'}" ] }, - "execution_count": 32, + "execution_count": 31, "metadata": {}, "output_type": "execute_result" }, @@ -2511,7 +2511,7 @@ "17" ] }, - "execution_count": 32, + "execution_count": 31, "metadata": {}, "output_type": "execute_result" } @@ -2523,12 +2523,12 @@ }, { "cell_type": "code", - "execution_count": 33, + "execution_count": 32, "id": "308358e6", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:09.944733Z", - "start_time": "2023-08-15T19:05:09.935821Z" + "end_time": "2023-11-01T00:04:07.817182Z", + "start_time": "2023-11-01T00:04:07.808963Z" } }, "outputs": [], @@ -2543,12 +2543,12 @@ }, { "cell_type": "code", - "execution_count": 34, + "execution_count": 33, "id": "67861c2e", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:11.039625Z", - "start_time": "2023-08-15T19:05:11.029779Z" + "end_time": "2023-11-01T00:04:08.579079Z", + "start_time": "2023-11-01T00:04:08.569312Z" } }, "outputs": [ @@ -2558,7 +2558,7 @@ "112" ] }, - "execution_count": 34, + "execution_count": 33, "metadata": {}, "output_type": "execute_result" }, @@ -2568,7 +2568,7 @@ "110" ] }, - "execution_count": 34, + "execution_count": 33, "metadata": {}, "output_type": "execute_result" }, @@ -2578,7 +2578,7 @@ "28" ] }, - "execution_count": 34, + "execution_count": 33, "metadata": {}, "output_type": "execute_result" } @@ -2596,12 +2596,12 @@ }, { "cell_type": "code", - "execution_count": 35, + "execution_count": 34, "id": "647e4065", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:13.845408Z", - "start_time": "2023-08-15T19:05:13.836259Z" + "end_time": "2023-11-01T00:04:11.694103Z", + "start_time": "2023-11-01T00:04:11.686120Z" } }, "outputs": [ @@ -2745,7 +2745,7 @@ "[113 rows x 4 columns]" ] }, - "execution_count": 35, + "execution_count": 34, "metadata": {}, "output_type": "execute_result" } @@ -2772,12 +2772,12 @@ }, { "cell_type": "code", - "execution_count": 36, + "execution_count": 35, "id": "52496738", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:18.433371Z", - "start_time": "2023-08-15T19:05:18.428482Z" + "end_time": "2023-11-01T00:04:15.671193Z", + "start_time": "2023-11-01T00:04:15.666776Z" } }, "outputs": [], @@ -2802,12 +2802,12 @@ }, { "cell_type": "code", - "execution_count": 37, + "execution_count": 36, "id": "b05e90f6", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:19.982323Z", - "start_time": "2023-08-15T19:05:19.977571Z" + "end_time": "2023-11-01T00:04:20.359831Z", + "start_time": "2023-11-01T00:04:20.354968Z" } }, "outputs": [ @@ -2824,7 +2824,7 @@ " 'stimulates']" ] }, - "execution_count": 37, + "execution_count": 36, "metadata": {}, "output_type": "execute_result" } @@ -2854,12 +2854,12 @@ }, { "cell_type": "code", - "execution_count": 38, + "execution_count": 37, "id": "6a3d217d", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:22.672037Z", - "start_time": "2023-08-15T19:05:22.661249Z" + "end_time": "2023-11-01T00:04:24.474441Z", + "start_time": "2023-11-01T00:04:24.463684Z" } }, "outputs": [], @@ -2881,12 +2881,12 @@ }, { "cell_type": "code", - "execution_count": 39, + "execution_count": 38, "id": "ec402da4", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:23.263601Z", - "start_time": "2023-08-15T19:05:23.254591Z" + "end_time": "2023-11-01T00:04:25.280546Z", + "start_time": "2023-11-01T00:04:25.271368Z" } }, "outputs": [ @@ -2993,7 +2993,7 @@ "[62 rows x 2 columns]" ] }, - "execution_count": 39, + "execution_count": 38, "metadata": {}, "output_type": "execute_result" } @@ -3013,12 +3013,12 @@ }, { "cell_type": "code", - "execution_count": 40, + "execution_count": 39, "id": "979e0da8", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:25.818456Z", - "start_time": "2023-08-15T19:05:25.603455Z" + "end_time": "2023-11-01T00:04:28.181252Z", + "start_time": "2023-11-01T00:04:27.964310Z" } }, "outputs": [], @@ -3030,12 +3030,12 @@ }, { "cell_type": "code", - "execution_count": 41, + "execution_count": 40, "id": "5d7f7944", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:26.445408Z", - "start_time": "2023-08-15T19:05:26.431421Z" + "end_time": "2023-11-01T00:04:29.089524Z", + "start_time": "2023-11-01T00:04:29.075674Z" } }, "outputs": [ @@ -3045,7 +3045,7 @@ "28" ] }, - "execution_count": 41, + "execution_count": 40, "metadata": {}, "output_type": "execute_result" }, @@ -3280,7 +3280,7 @@ "149 uses SEMMEDDB:USES has input" ] }, - "execution_count": 41, + "execution_count": 40, "metadata": {}, "output_type": "execute_result" }, @@ -3354,7 +3354,7 @@ "61 stimulates SEMMEDDB:STIMULATES None" ] }, - "execution_count": 41, + "execution_count": 40, "metadata": {}, "output_type": "execute_result" } @@ -3417,12 +3417,12 @@ }, { "cell_type": "code", - "execution_count": 42, + "execution_count": 41, "id": "77adf097", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:32.137934Z", - "start_time": "2023-08-15T19:05:32.127521Z" + "end_time": "2023-11-01T00:05:35.007229Z", + "start_time": "2023-11-01T00:05:34.996880Z" } }, "outputs": [], @@ -3479,12 +3479,12 @@ }, { "cell_type": "code", - "execution_count": 43, + "execution_count": 42, "id": "80e84505", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:34.475754Z", - "start_time": "2023-08-15T19:05:34.472425Z" + "end_time": "2023-11-01T00:06:01.446841Z", + "start_time": "2023-11-01T00:06:01.443348Z" } }, "outputs": [], @@ -3503,12 +3503,12 @@ }, { "cell_type": "code", - "execution_count": 44, + "execution_count": 43, "id": "f9acdf7f", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:36.571564Z", - "start_time": "2023-08-15T19:05:36.569172Z" + "end_time": "2023-11-01T00:06:03.418291Z", + "start_time": "2023-11-01T00:06:03.415731Z" } }, "outputs": [], @@ -3532,12 +3532,12 @@ }, { "cell_type": "code", - "execution_count": 45, + "execution_count": 44, "id": "52cfbbc4", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:37.107259Z", - "start_time": "2023-08-15T19:05:37.101124Z" + "end_time": "2023-11-01T00:06:05.503393Z", + "start_time": "2023-11-01T00:06:05.497055Z" } }, "outputs": [], @@ -3566,12 +3566,12 @@ }, { "cell_type": "code", - "execution_count": 46, + "execution_count": 45, "id": "9718fe3a", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:38.825009Z", - "start_time": "2023-08-15T19:05:38.813409Z" + "end_time": "2023-11-01T00:06:06.119770Z", + "start_time": "2023-11-01T00:06:06.108296Z" } }, "outputs": [ @@ -4053,7 +4053,7 @@ "149 None None None " ] }, - "execution_count": 46, + "execution_count": 45, "metadata": {}, "output_type": "execute_result" } @@ -4064,12 +4064,12 @@ }, { "cell_type": "code", - "execution_count": 47, + "execution_count": 46, "id": "b121018d", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:41.183914Z", - "start_time": "2023-08-15T19:05:41.174734Z" + "end_time": "2023-11-01T00:06:09.372961Z", + "start_time": "2023-11-01T00:06:09.363918Z" }, "scrolled": true }, @@ -4148,7 +4148,7 @@ "156 None MISSING None None None " ] }, - "execution_count": 47, + "execution_count": 46, "metadata": {}, "output_type": "execute_result" } @@ -4186,12 +4186,12 @@ }, { "cell_type": "code", - "execution_count": 48, + "execution_count": 47, "id": "85224c41", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:43.957734Z", - "start_time": "2023-08-15T19:05:43.952940Z" + "end_time": "2023-11-01T00:06:14.573869Z", + "start_time": "2023-11-01T00:06:14.569546Z" } }, "outputs": [], @@ -4203,12 +4203,12 @@ }, { "cell_type": "code", - "execution_count": 49, + "execution_count": 48, "id": "50027e5e", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:44.614476Z", - "start_time": "2023-08-15T19:05:44.608964Z" + "end_time": "2023-11-01T00:06:15.169135Z", + "start_time": "2023-11-01T00:06:15.163453Z" } }, "outputs": [], @@ -4228,12 +4228,12 @@ }, { "cell_type": "code", - "execution_count": 50, + "execution_count": 49, "id": "946dd392", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:45.262331Z", - "start_time": "2023-08-15T19:05:45.251426Z" + "end_time": "2023-11-01T00:06:15.785132Z", + "start_time": "2023-11-01T00:06:15.774279Z" } }, "outputs": [ @@ -4687,7 +4687,7 @@ "149 None None " ] }, - "execution_count": 50, + "execution_count": 49, "metadata": {}, "output_type": "execute_result" } @@ -4716,12 +4716,12 @@ }, { "cell_type": "code", - "execution_count": 51, + "execution_count": 50, "id": "9079161f", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:49.395226Z", - "start_time": "2023-08-15T19:05:49.389288Z" + "end_time": "2023-11-01T00:06:30.230522Z", + "start_time": "2023-11-01T00:06:30.224218Z" } }, "outputs": [ @@ -4738,7 +4738,7 @@ "{'MEASUREMENT_OF', 'METHOD_OF'}" ] }, - "execution_count": 51, + "execution_count": 50, "metadata": {}, "output_type": "execute_result" }, @@ -4755,7 +4755,7 @@ "{'ISA'}" ] }, - "execution_count": 51, + "execution_count": 50, "metadata": {}, "output_type": "execute_result" } @@ -4770,12 +4770,12 @@ }, { "cell_type": "code", - "execution_count": 52, + "execution_count": 51, "id": "ca959b8c", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:53.310072Z", - "start_time": "2023-08-15T19:05:53.301024Z" + "end_time": "2023-11-01T00:06:31.593504Z", + "start_time": "2023-11-01T00:06:31.584658Z" } }, "outputs": [ @@ -4850,7 +4850,7 @@ "156 MISSING None None None " ] }, - "execution_count": 52, + "execution_count": 51, "metadata": {}, "output_type": "execute_result" } @@ -4878,12 +4878,12 @@ }, { "cell_type": "code", - "execution_count": 53, + "execution_count": 52, "id": "5e25a929", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:56.022252Z", - "start_time": "2023-08-15T19:05:56.018692Z" + "end_time": "2023-11-01T00:06:40.160883Z", + "start_time": "2023-11-01T00:06:40.157105Z" } }, "outputs": [ @@ -4893,7 +4893,7 @@ "{'ISA', 'MEASUREMENT_OF', 'MEASURES', 'METHOD_OF'}" ] }, - "execution_count": 53, + "execution_count": 52, "metadata": {}, "output_type": "execute_result" } @@ -4905,12 +4905,12 @@ }, { "cell_type": "code", - "execution_count": 54, + "execution_count": 53, "id": "5a46158c", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:56.606100Z", - "start_time": "2023-08-15T19:05:56.593376Z" + "end_time": "2023-11-01T00:06:41.147796Z", + "start_time": "2023-11-01T00:06:41.135054Z" } }, "outputs": [ @@ -5334,7 +5334,7 @@ "149 None None " ] }, - "execution_count": 54, + "execution_count": 53, "metadata": {}, "output_type": "execute_result" }, @@ -5344,7 +5344,7 @@ "(25, 9)" ] }, - "execution_count": 54, + "execution_count": 53, "metadata": {}, "output_type": "execute_result" } @@ -5358,12 +5358,12 @@ }, { "cell_type": "code", - "execution_count": 55, + "execution_count": 54, "id": "64cacd52", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:59.131569Z", - "start_time": "2023-08-15T19:05:59.126820Z" + "end_time": "2023-11-01T00:06:43.956353Z", + "start_time": "2023-11-01T00:06:43.951766Z" } }, "outputs": [], @@ -5374,12 +5374,12 @@ }, { "cell_type": "code", - "execution_count": 56, + "execution_count": 55, "id": "530e3631", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:05:59.652929Z", - "start_time": "2023-08-15T19:05:59.643193Z" + "end_time": "2023-11-01T00:06:44.562797Z", + "start_time": "2023-11-01T00:06:44.553765Z" } }, "outputs": [ @@ -5389,7 +5389,7 @@ "112" ] }, - "execution_count": 56, + "execution_count": 55, "metadata": {}, "output_type": "execute_result" }, @@ -5399,7 +5399,7 @@ "110" ] }, - "execution_count": 56, + "execution_count": 55, "metadata": {}, "output_type": "execute_result" }, @@ -5409,7 +5409,7 @@ "25" ] }, - "execution_count": 56, + "execution_count": 55, "metadata": {}, "output_type": "execute_result" } @@ -5427,12 +5427,12 @@ }, { "cell_type": "code", - "execution_count": 57, + "execution_count": 56, "id": "863543b6", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:06:01.703338Z", - "start_time": "2023-08-15T19:06:01.693848Z" + "end_time": "2023-11-01T00:06:46.403124Z", + "start_time": "2023-11-01T00:06:46.393943Z" } }, "outputs": [ @@ -5442,7 +5442,7 @@ "(15764, 7)" ] }, - "execution_count": 57, + "execution_count": 56, "metadata": {}, "output_type": "execute_result" }, @@ -5607,7 +5607,7 @@ "9 747981 620129 " ] }, - "execution_count": 57, + "execution_count": 56, "metadata": {}, "output_type": "execute_result" } @@ -5648,12 +5648,12 @@ }, { "cell_type": "code", - "execution_count": 58, + "execution_count": 57, "id": "5f404ea6", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:06:05.285333Z", - "start_time": "2023-08-15T19:06:05.275080Z" + "end_time": "2023-11-01T00:06:50.839721Z", + "start_time": "2023-11-01T00:06:50.829804Z" } }, "outputs": [ @@ -5752,7 +5752,7 @@ "4 NaN NaN semantic type exclusion " ] }, - "execution_count": 58, + "execution_count": 57, "metadata": {}, "output_type": "execute_result" }, @@ -5762,7 +5762,7 @@ "(1443, 6)" ] }, - "execution_count": 58, + "execution_count": 57, "metadata": {}, "output_type": "execute_result" }, @@ -5773,7 +5773,7 @@ " dtype=object)" ] }, - "execution_count": 58, + "execution_count": 57, "metadata": {}, "output_type": "execute_result" } @@ -5794,12 +5794,12 @@ }, { "cell_type": "code", - "execution_count": 59, + "execution_count": 58, "id": "efd0d556", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:06:08.130404Z", - "start_time": "2023-08-15T19:06:08.123467Z" + "end_time": "2023-11-01T00:06:55.186295Z", + "start_time": "2023-11-01T00:06:55.179388Z" } }, "outputs": [], @@ -5844,12 +5844,12 @@ }, { "cell_type": "code", - "execution_count": 60, + "execution_count": 59, "id": "32c37c3b", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:06:09.294486Z", - "start_time": "2023-08-15T19:06:09.280932Z" + "end_time": "2023-11-01T00:06:58.848387Z", + "start_time": "2023-11-01T00:06:58.835669Z" } }, "outputs": [ @@ -5893,7 +5893,7 @@ "Index: []" ] }, - "execution_count": 60, + "execution_count": 59, "metadata": {}, "output_type": "execute_result" }, @@ -6124,7 +6124,7 @@ "1395 tmco T079 Range exclusion " ] }, - "execution_count": 60, + "execution_count": 59, "metadata": {}, "output_type": "execute_result" } @@ -6137,12 +6137,12 @@ }, { "cell_type": "code", - "execution_count": 61, + "execution_count": 60, "id": "89bda465", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:06:11.990369Z", - "start_time": "2023-08-15T19:06:11.987012Z" + "end_time": "2023-11-01T00:07:02.274322Z", + "start_time": "2023-11-01T00:07:02.271096Z" } }, "outputs": [], @@ -6154,12 +6154,12 @@ }, { "cell_type": "code", - "execution_count": 62, + "execution_count": 61, "id": "1bb3d990", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:06:12.757483Z", - "start_time": "2023-08-15T19:06:12.745248Z" + "end_time": "2023-11-01T00:07:03.428725Z", + "start_time": "2023-11-01T00:07:03.415993Z" } }, "outputs": [ @@ -6390,7 +6390,7 @@ "1395 tmco T079 Range exclusion " ] }, - "execution_count": 62, + "execution_count": 61, "metadata": {}, "output_type": "execute_result" }, @@ -6434,7 +6434,7 @@ "Index: []" ] }, - "execution_count": 62, + "execution_count": 61, "metadata": {}, "output_type": "execute_result" } @@ -6463,12 +6463,12 @@ }, { "cell_type": "code", - "execution_count": 63, + "execution_count": 62, "id": "e5bb1ec1", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:06:18.626719Z", - "start_time": "2023-08-15T19:06:16.209031Z" + "end_time": "2023-11-01T00:07:11.763156Z", + "start_time": "2023-11-01T00:07:09.339272Z" } }, "outputs": [], @@ -6489,12 +6489,12 @@ }, { "cell_type": "code", - "execution_count": 64, + "execution_count": 63, "id": "bf7a6309", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T19:06:19.417594Z", - "start_time": "2023-08-15T19:06:19.408305Z" + "end_time": "2023-11-01T00:07:14.100476Z", + "start_time": "2023-11-01T00:07:14.091417Z" } }, "outputs": [ @@ -6504,7 +6504,7 @@ "(11971, 7)" ] }, - "execution_count": 64, + "execution_count": 63, "metadata": {}, "output_type": "execute_result" }, @@ -6669,7 +6669,7 @@ "13 723059 502492 " ] }, - "execution_count": 64, + "execution_count": 63, "metadata": {}, "output_type": "execute_result" } @@ -6679,6 +6679,164 @@ "imported_metatriples.head(10)" ] }, + { + "cell_type": "code", + "execution_count": 64, + "id": "83675d58", + "metadata": { + "ExecuteTime": { + "end_time": "2023-11-01T00:07:21.143780Z", + "start_time": "2023-11-01T00:07:21.133512Z" + } + }, + "outputs": [ + { + "data": { + "text/html": [ + "
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SUBJECT_PREFIXSUBJECT_SEMTYPEPREDICATEOBJECT_PREFIXOBJECT_SEMTYPEDOC_NDOC_N_VALID
4595umlsvitaTREATSumlsdsyn697317
11085umlsvitaTREATSumlsacab2714
11623umlsvitaTREATSumlscgab1411
11964umlsvitaTREATSumlsneop5110
13245umlsvitaTREATSumlsmobd236
13256umlsvitaTREATSumlspatf186
18245umlsvitaTREATSumlsinpo60
18247umlsvitaTREATSumlsanab20
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" + ], + "text/plain": [ + " SUBJECT_PREFIX SUBJECT_SEMTYPE PREDICATE OBJECT_PREFIX OBJECT_SEMTYPE \\\n", + "4595 umls vita TREATS umls dsyn \n", + "11085 umls vita TREATS umls acab \n", + "11623 umls vita TREATS umls cgab \n", + "11964 umls vita TREATS umls neop \n", + "13245 umls vita TREATS umls mobd \n", + "13256 umls vita TREATS umls patf \n", + "18245 umls vita TREATS umls inpo \n", + "18247 umls vita TREATS umls anab \n", + "\n", + " DOC_N DOC_N_VALID \n", + "4595 697 317 \n", + "11085 27 14 \n", + "11623 14 11 \n", + "11964 51 10 \n", + "13245 23 6 \n", + "13256 18 6 \n", + "18245 6 0 \n", + "18247 2 0 " + ] + }, + "execution_count": 64, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "imported_metatriples[(imported_metatriples['SUBJECT_SEMTYPE'] == 'vita') &\n", + " (imported_metatriples['PREDICATE'] == 'TREATS')]" + ] + }, { "cell_type": "markdown", "id": "e1e9660d", @@ -6724,8 +6882,8 @@ "id": "b8f25836", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:09:29.015040Z", - "start_time": "2023-08-15T20:09:29.003915Z" + "end_time": "2023-11-01T00:07:28.244196Z", + "start_time": "2023-11-01T00:07:28.233522Z" } }, "outputs": [ @@ -6786,8 +6944,8 @@ "id": "3d0ed289", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:09:44.103173Z", - "start_time": "2023-08-15T20:09:44.095973Z" + "end_time": "2023-11-01T00:07:30.677057Z", + "start_time": "2023-11-01T00:07:30.670084Z" } }, "outputs": [ @@ -6828,8 +6986,8 @@ "id": "ddd78804", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:10:38.908679Z", - "start_time": "2023-08-15T20:10:37.622868Z" + "end_time": "2023-11-01T00:07:33.779523Z", + "start_time": "2023-11-01T00:07:33.114980Z" } }, "outputs": [ @@ -6864,8 +7022,8 @@ "id": "665de94a", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:12:27.257936Z", - "start_time": "2023-08-15T20:12:27.244354Z" + "end_time": "2023-11-01T00:07:36.202474Z", + "start_time": "2023-11-01T00:07:36.189172Z" } }, "outputs": [ @@ -6946,8 +7104,8 @@ "id": "86920c33", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:14:11.337762Z", - "start_time": "2023-08-15T20:14:11.326939Z" + "end_time": "2023-11-01T00:07:40.654039Z", + "start_time": "2023-11-01T00:07:40.643208Z" } }, "outputs": [ @@ -7102,8 +7260,8 @@ "id": "2c859df9", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:15:14.927741Z", - "start_time": "2023-08-15T20:15:14.917492Z" + "end_time": "2023-11-01T00:07:45.637142Z", + "start_time": "2023-11-01T00:07:45.626942Z" } }, "outputs": [ @@ -7207,8 +7365,8 @@ "id": "b53030eb", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:15:44.533085Z", - "start_time": "2023-08-15T20:15:44.522584Z" + "end_time": "2023-11-01T00:07:55.565607Z", + "start_time": "2023-11-01T00:07:55.558661Z" } }, "outputs": [], @@ -7236,8 +7394,8 @@ "id": "70092440", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:15:45.972422Z", - "start_time": "2023-08-15T20:15:45.963311Z" + "end_time": "2023-11-01T00:07:56.757985Z", + "start_time": "2023-11-01T00:07:56.748795Z" } }, "outputs": [ @@ -7420,8 +7578,8 @@ "id": "9e435399", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:15:54.514445Z", - "start_time": "2023-08-15T20:15:54.507603Z" + "end_time": "2023-11-01T00:08:24.752998Z", + "start_time": "2023-11-01T00:08:24.746236Z" } }, "outputs": [], @@ -7450,8 +7608,8 @@ "id": "a0fe51f5", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:15:55.253507Z", - "start_time": "2023-08-15T20:15:55.243635Z" + "end_time": "2023-11-01T00:08:25.430042Z", + "start_time": "2023-11-01T00:08:25.420756Z" } }, "outputs": [ @@ -7646,8 +7804,8 @@ "id": "3f42bd07", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:16:00.844210Z", - "start_time": "2023-08-15T20:16:00.837350Z" + "end_time": "2023-11-01T00:08:33.439230Z", + "start_time": "2023-11-01T00:08:33.432212Z" } }, "outputs": [], @@ -7666,8 +7824,8 @@ "id": "6c651d23", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:16:01.848338Z", - "start_time": "2023-08-15T20:16:01.837594Z" + "end_time": "2023-11-01T00:08:34.151632Z", + "start_time": "2023-11-01T00:08:34.141051Z" } }, "outputs": [ @@ -7805,8 +7963,8 @@ "id": "cc7864f5", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:16:09.910663Z", - "start_time": "2023-08-15T20:16:09.887857Z" + "end_time": "2023-11-01T00:08:40.454232Z", + "start_time": "2023-11-01T00:08:40.431252Z" } }, "outputs": [ @@ -8058,8 +8216,8 @@ "id": "b8d843fb", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:17:27.829408Z", - "start_time": "2023-08-15T20:17:27.800855Z" + "end_time": "2023-11-01T00:08:54.933357Z", + "start_time": "2023-11-01T00:08:54.904888Z" } }, "outputs": [ @@ -8682,8 +8840,8 @@ "id": "480daedc", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:17:42.373845Z", - "start_time": "2023-08-15T20:17:42.231266Z" + "end_time": "2023-11-01T00:09:04.851867Z", + "start_time": "2023-11-01T00:09:04.713832Z" } }, "outputs": [], @@ -8702,8 +8860,8 @@ "id": "08e436d1", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:17:43.484688Z", - "start_time": "2023-08-15T20:17:43.470555Z" + "end_time": "2023-11-01T00:09:05.792681Z", + "start_time": "2023-11-01T00:09:05.778673Z" } }, "outputs": [ @@ -8855,12 +9013,12 @@ }, { "cell_type": "code", - "execution_count": 81, + "execution_count": 87, "id": "222c6bd1", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:17:57.241056Z", - "start_time": "2023-08-15T20:17:57.232528Z" + "end_time": "2023-11-01T00:46:52.751245Z", + "start_time": "2023-11-01T00:46:52.744920Z" } }, "outputs": [], @@ -8892,99 +9050,63 @@ " else:\n", " normal_op_name = f'{original_subj},{subj_prefix}-{original_pred}-{original_obj},{obj_prefix}'\n", " \n", - " ## USE FOLDED in order to have the quotes handled properly (no escape \\) in the dumped yaml \n", - " ## notice that subject.{subj_prefix} only works because \n", - " ## the API fields are spelled 'umls' and 'ncbigene' too\n", - " ## if this changes, it'll need adjustment\n", - " normal_op_body = folded(\n", - " '{' \n", - " '\"q\": {{ queryInputs ' \n", - " f'| replPrefix(\\'predicate:{original_pred} AND object.semantic_type_abbreviation:{original_obj} AND _exists_:object.{obj_prefix} AND pmid_count:>{pmid_count} AND subject.{subj_prefix}\\')' \n", - " '| dump ' \n", - " '}}, ' \n", - " '\"scopes\": []' \n", - " '}')\n", + " temp = {\n", + " ## original direction: subject -> object\n", + " normal_op_name: [\n", + " {\n", + " 'supportBatch': True,\n", + " 'useTemplating': True,\n", + " 'inputs': [\n", + " {\n", + " 'id': biolink_subj_prefix,\n", + " 'semantic': biolink_subj ## input is subject!\n", + " }\n", + " ],\n", + " ## notice that subject.{subj_prefix} only works because \n", + " ## the API fields are spelled 'umls' and 'ncbigene' too\n", + " ## if this changes, it'll need adjustment\n", + " 'requestBody': {\n", + " 'body': {\n", + " 'q': '{{ queryInputs }}',\n", + " 'scopes': f'subject.{subj_prefix}'\n", + " }\n", + " },\n", + " ## notice that object.{obj_prefix} only works because \n", + " ## the API fields are spelled 'umls' and 'ncbigene' too\n", + " ## if this changes, it'll need adjustment\n", + " 'parameters': {\n", + " 'fields': f'object.{obj_prefix},predication.pmid,'\n", + " 'predication.sentence,subject.name,object.name',\n", + " 'size': POST_size,\n", + " 'filter': f'predicate:{original_pred} AND '\n", + " f'object.semantic_type_abbreviation:{original_obj} AND '\n", + " f'_exists_:object.{obj_prefix} AND '\n", + " f'pmid_count:>{pmid_count}'\n", + " },\n", + " 'outputs': [\n", + " {\n", + " 'id': biolink_obj_prefix,\n", + " 'semantic': biolink_obj ## output is object\n", + " }\n", + " ],\n", + " 'predicate': biolink_pred,\n", + " 'source': doublequote('infores:semmeddb'),\n", + " 'response_mapping': {\n", + " ## matches output as object\n", + " ## so umls-obj and ncbigene-obj are the response-mappings generated\n", + " \"$ref\": f'#/components/x-bte-response-mapping/{obj_prefix}-obj' \n", + " }\n", + " }\n", + " ]\n", + " }\n", " \n", - " if biolink_qualified_pred:\n", " ## if there is a qualified_predicate\n", " ## there's a set of qualifiers that also has obj aspect and obj direction\n", - " temp = {\n", - " ## original direction: subject -> object\n", - " normal_op_name: [\n", - " {\n", - " 'supportBatch': True,\n", - " 'useTemplating': True,\n", - " 'inputs': [\n", - " {\n", - " 'id': biolink_subj_prefix,\n", - " 'semantic': biolink_subj ## input is subject!\n", - " }\n", - " ],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': normal_op_body},\n", - " ## notice that object.{obj_prefix} only works because \n", - " ## the API fields are spelled 'umls' and 'ncbigene' too\n", - " ## if this changes, it'll need adjustment\n", - " 'parameters': {\n", - " 'fields': f'object.{obj_prefix},predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': POST_size\n", - " },\n", - " 'outputs': [\n", - " {\n", - " 'id': biolink_obj_prefix,\n", - " 'semantic': biolink_obj ## output is object\n", - " }\n", - " ],\n", - " 'predicate': biolink_pred,\n", - " 'qualifiers': {\n", - " 'qualified_predicate': biolink_qualified_pred,\n", - " 'object_aspect_qualifier': biolink_obj_asp,\n", - " 'object_direction_qualifier': biolink_obj_direct\n", - "\n", - " },\n", - " 'source': doublequote('infores:semmeddb'),\n", - " 'response_mapping': {\n", - " ## matches output as object\n", - " ## so umls-obj and ncbigene-obj are the response-mappings generated\n", - " \"$ref\": f'#/components/x-bte-response-mapping/{obj_prefix}-obj' \n", - " }\n", - " }\n", - " ]\n", - " }\n", - " else:\n", - " ## create operation without qualifiers..\n", - " temp = {\n", - " ## original direction: subject -> object\n", - " normal_op_name: [\n", - " {\n", - " 'supportBatch': True,\n", - " 'useTemplating': True,\n", - " 'inputs': [\n", - " {\n", - " 'id': biolink_subj_prefix,\n", - " 'semantic': biolink_subj ## input is subject!\n", - " }\n", - " ],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': normal_op_body},\n", - " 'parameters': {\n", - " 'fields': f'object.{obj_prefix},predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': POST_size\n", - " },\n", - " 'outputs': [\n", - " {\n", - " 'id': biolink_obj_prefix,\n", - " 'semantic': biolink_obj ## output is object\n", - " }\n", - " ],\n", - " 'predicate': biolink_pred,\n", - " 'source': doublequote('infores:semmeddb'),\n", - " 'response_mapping': {\n", - " ## matches output as object\n", - " ## so umls-obj and ncbigene-obj are the response-mappings generated\n", - " \"$ref\": f'#/components/x-bte-response-mapping/{obj_prefix}-obj' }\n", - " }\n", - " ]\n", + " if biolink_qualified_pred:\n", + " temp[normal_op_name][0]['qualifiers'] = {\n", + " 'qualified_predicate': biolink_qualified_pred,\n", + " 'object_aspect_qualifier': biolink_obj_asp,\n", + " 'object_direction_qualifier': biolink_obj_direct\n", " }\n", " \n", " return temp" @@ -8992,12 +9114,12 @@ }, { "cell_type": "code", - "execution_count": 82, + "execution_count": 88, "id": "83b2edf4", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:17:58.066598Z", - "start_time": "2023-08-15T20:17:58.062296Z" + "end_time": "2023-11-01T00:46:55.391168Z", + "start_time": "2023-11-01T00:46:55.386875Z" } }, "outputs": [ @@ -9007,17 +9129,18 @@ "{'bpoc-LOCATION_OF-neop': [{'supportBatch': True,\n", " 'useTemplating': True,\n", " 'inputs': [{'id': 'UMLS', 'semantic': 'GrossAnatomicalStructure'}],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': '{\"q\": {{ queryInputs | replPrefix(\\'predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls AND pmid_count:>3 AND subject.umls\\')| dump }}, \"scopes\": []}'},\n", + " 'requestBody': {'body': {'q': '{{ queryInputs }}',\n", + " 'scopes': 'subject.umls'}},\n", " 'parameters': {'fields': 'object.umls,predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': 1000},\n", + " 'size': 1000,\n", + " 'filter': 'predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls AND pmid_count:>3'},\n", " 'outputs': [{'id': 'UMLS', 'semantic': 'Disease'}],\n", " 'predicate': 'location_of',\n", " 'source': 'infores:semmeddb',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-obj'}}]}" ] }, - "execution_count": 82, + "execution_count": 88, "metadata": {}, "output_type": "execute_result" } @@ -9034,12 +9157,12 @@ }, { "cell_type": "code", - "execution_count": 83, + "execution_count": 89, "id": "723f107d", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:18:06.404844Z", - "start_time": "2023-08-15T20:18:06.400233Z" + "end_time": "2023-11-01T00:46:57.903622Z", + "start_time": "2023-11-01T00:46:57.899194Z" } }, "outputs": [ @@ -9049,17 +9172,18 @@ "{'gngm,ncbigene-ASSOCIATED_WITH-neop,umls': [{'supportBatch': True,\n", " 'useTemplating': True,\n", " 'inputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': '{\"q\": {{ queryInputs | replPrefix(\\'predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene\\')| dump }}, \"scopes\": []}'},\n", + " 'requestBody': {'body': {'q': '{{ queryInputs }}',\n", + " 'scopes': 'subject.ncbigene'}},\n", " 'parameters': {'fields': 'object.umls,predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': 1000},\n", + " 'size': 1000,\n", + " 'filter': 'predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop AND _exists_:object.umls AND pmid_count:>3'},\n", " 'outputs': [{'id': 'UMLS', 'semantic': 'Disease'}],\n", " 'predicate': 'related_to',\n", " 'source': 'infores:semmeddb',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-obj'}}]}" ] }, - "execution_count": 83, + "execution_count": 89, "metadata": {}, "output_type": "execute_result" } @@ -9076,12 +9200,12 @@ }, { "cell_type": "code", - "execution_count": 84, + "execution_count": 90, "id": "c55ecc04", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:18:08.988923Z", - "start_time": "2023-08-15T20:18:08.984451Z" + "end_time": "2023-11-01T00:47:00.060571Z", + "start_time": "2023-11-01T00:47:00.056163Z" } }, "outputs": [ @@ -9091,20 +9215,21 @@ "{'aapp,umls-STIMULATES-gngm,ncbigene': [{'supportBatch': True,\n", " 'useTemplating': True,\n", " 'inputs': [{'id': 'UMLS', 'semantic': 'Polypeptide'}],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': '{\"q\": {{ queryInputs | replPrefix(\\'predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls\\')| dump }}, \"scopes\": []}'},\n", + " 'requestBody': {'body': {'q': '{{ queryInputs }}',\n", + " 'scopes': 'subject.umls'}},\n", " 'parameters': {'fields': 'object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': 1000},\n", + " 'size': 1000,\n", + " 'filter': 'predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene AND pmid_count:>3'},\n", " 'outputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", " 'predicate': 'affects',\n", + " 'source': 'infores:semmeddb',\n", + " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-obj'},\n", " 'qualifiers': {'qualified_predicate': 'causes',\n", " 'object_aspect_qualifier': 'activity_or_abundance',\n", - " 'object_direction_qualifier': 'increased'},\n", - " 'source': 'infores:semmeddb',\n", - " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-obj'}}]}" + " 'object_direction_qualifier': 'increased'}}]}" ] }, - "execution_count": 84, + "execution_count": 90, "metadata": {}, "output_type": "execute_result" } @@ -9121,12 +9246,12 @@ }, { "cell_type": "code", - "execution_count": 85, + "execution_count": 91, "id": "ba5c9ffa", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:18:11.414619Z", - "start_time": "2023-08-15T20:18:11.410268Z" + "end_time": "2023-11-01T00:47:01.901419Z", + "start_time": "2023-11-01T00:47:01.896839Z" } }, "outputs": [ @@ -9136,20 +9261,21 @@ "{'gngm,ncbigene-STIMULATES-gngm,ncbigene': [{'supportBatch': True,\n", " 'useTemplating': True,\n", " 'inputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': '{\"q\": {{ queryInputs | replPrefix(\\'predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene\\')| dump }}, \"scopes\": []}'},\n", + " 'requestBody': {'body': {'q': '{{ queryInputs }}',\n", + " 'scopes': 'subject.ncbigene'}},\n", " 'parameters': {'fields': 'object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': 1000},\n", + " 'size': 1000,\n", + " 'filter': 'predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene AND pmid_count:>3'},\n", " 'outputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", " 'predicate': 'affects',\n", + " 'source': 'infores:semmeddb',\n", + " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-obj'},\n", " 'qualifiers': {'qualified_predicate': 'causes',\n", " 'object_aspect_qualifier': 'activity_or_abundance',\n", - " 'object_direction_qualifier': 'increased'},\n", - " 'source': 'infores:semmeddb',\n", - " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-obj'}}]}" + " 'object_direction_qualifier': 'increased'}}]}" ] }, - "execution_count": 85, + "execution_count": 91, "metadata": {}, "output_type": "execute_result" } @@ -9166,12 +9292,12 @@ }, { "cell_type": "code", - "execution_count": 86, + "execution_count": 92, "id": "8effdfd9", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:18:20.762500Z", - "start_time": "2023-08-15T20:18:20.744594Z" + "end_time": "2023-11-01T00:47:03.462234Z", + "start_time": "2023-11-01T00:47:03.444109Z" } }, "outputs": [ @@ -9976,7 +10102,7 @@ "4995 None None " ] }, - "execution_count": 86, + "execution_count": 92, "metadata": {}, "output_type": "execute_result" } @@ -9997,12 +10123,12 @@ }, { "cell_type": "code", - "execution_count": 87, + "execution_count": 96, "id": "912aa75d", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:18:25.619454Z", - "start_time": "2023-08-15T20:18:25.611341Z" + "end_time": "2023-11-01T00:49:34.972379Z", + "start_time": "2023-11-01T00:49:34.965784Z" } }, "outputs": [], @@ -10036,101 +10162,64 @@ " else:\n", " rev_op_name = f'{original_subj},{subj_prefix}-{original_pred}-{original_obj},{obj_prefix}-rev'\n", "\n", - " \n", - " \n", - " ## USE FOLDED in order to have the quotes handled properly (no escape \\) in the dumped yaml\n", - " ## notice that object.{obj_prefix} only works because \n", - " ## the API fields are spelled 'umls' and 'ncbigene' too\n", - " ## if this changes, it'll need adjustment\n", - " rev_op_body = folded(\n", - " '{' \n", - " '\"q\": {{ queryInputs ' \n", - " f'| replPrefix(\\'predicate:{original_pred} AND subject.semantic_type_abbreviation:{original_subj} AND _exists_:subject.{subj_prefix} AND pmid_count:>{pmid_count} AND object.{obj_prefix}\\')' \n", - " '| dump ' \n", - " '}}, ' \n", - " '\"scopes\": []' \n", - " '}')\n", + " temp = {\n", + " ## reverse direction: object -> subject\n", + " rev_op_name: [\n", + " {\n", + " 'supportBatch': True,\n", + " 'useTemplating': True,\n", + " 'inputs': [\n", + " {\n", + " 'id': biolink_obj_prefix,\n", + " 'semantic': biolink_obj ## input is object!\n", + " }\n", + " ],\n", + " ## notice that object.{obj_prefix} only works because \n", + " ## the API fields are spelled 'umls' and 'ncbigene' too\n", + " ## if this changes, it'll need adjustment\n", + " 'requestBody': {\n", + " 'body': {\n", + " 'q': '{{ queryInputs }}',\n", + " 'scopes': f'object.{obj_prefix}'\n", + " }\n", + " },\n", + " ## notice that subject.{subj_prefix} only works because \n", + " ## the API fields are spelled 'umls' and 'ncbigene' too\n", + " ## if this changes, it'll need adjustment\n", + " 'parameters': {\n", + " 'fields': f'subject.{subj_prefix},predication.pmid,'\n", + " 'predication.sentence,subject.name,object.name',\n", + " 'size': POST_size,\n", + " 'filter': f'predicate:{original_pred} AND '\n", + " f'subject.semantic_type_abbreviation:{original_subj} AND '\n", + " f'_exists_:subject.{subj_prefix} AND '\n", + " f'pmid_count:>{pmid_count}'\n", + " }, \n", + " 'outputs': [\n", + " {\n", + " 'id': biolink_subj_prefix,\n", + " 'semantic': biolink_subj ## output is subject\n", + " }\n", + " ],\n", + " 'predicate': biolink_inverse_pred, ## use inverse pred!\n", + " 'source': doublequote('infores:semmeddb'),\n", + " 'response_mapping': {\n", + " ## matches output as object\n", + " ## so umls-obj and ncbigene-obj are the response-mappings generated\n", + " \"$ref\": f'#/components/x-bte-response-mapping/{subj_prefix}-subj'\n", + " }\n", + " }\n", + " ]\n", + " }\n", " \n", - " if biolink_inverse_qualified_pred:\n", " ## if there is a qualified_predicate\n", " ## there's a set of qualifiers that also has subj aspect and subj direction\n", - " temp = {\n", - " ## reverse direction: object -> subject\n", - " rev_op_name: [\n", - " {\n", - " 'supportBatch': True,\n", - " 'useTemplating': True,\n", - " 'inputs': [\n", - " {\n", - " 'id': biolink_obj_prefix,\n", - " 'semantic': biolink_obj ## input is object!\n", - " }\n", - " ],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': rev_op_body},\n", - " ## notice that subject.{subj_prefix} only works because \n", - " ## the API fields are spelled 'umls' and 'ncbigene' too\n", - " ## if this changes, it'll need adjustment\n", - " 'parameters': {\n", - " 'fields': f'subject.{subj_prefix},predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': POST_size\n", - " },\n", - " 'outputs': [\n", - " {\n", - " 'id': biolink_subj_prefix,\n", - " 'semantic': biolink_subj ## output is subject\n", - " }\n", - " ],\n", - " 'predicate': biolink_inverse_pred, ## use inverse pred!\n", - " 'qualifiers': {\n", - " 'qualified_predicate': biolink_inverse_qualified_pred, ## use inverse pred!\n", - " ## use subject qualifiers\n", - " 'subject_aspect_qualifier': biolink_inverse_subj_asp, \n", - " 'subject_direction_qualifier': biolink_inverse_subj_direct \n", - " }, \n", - " 'source': doublequote('infores:semmeddb'),\n", - " 'response_mapping': {\n", - " ## matches output as object\n", - " ## so umls-obj and ncbigene-obj are the response-mappings generated\n", - " \"$ref\": f'#/components/x-bte-response-mapping/{subj_prefix}-subj'\n", - " }\n", - " }\n", - " ]\n", - " }\n", - " else:\n", - " ## create operation without qualifiers..\n", - " temp = {\n", - " ## reverse direction: object -> subject\n", - " rev_op_name: [\n", - " {\n", - " 'supportBatch': True,\n", - " 'useTemplating': True,\n", - " 'inputs': [\n", - " {\n", - " 'id': biolink_obj_prefix,\n", - " 'semantic': biolink_obj ## input is object!\n", - " }\n", - " ],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': rev_op_body},\n", - " 'parameters': {\n", - " 'fields': f'subject.{subj_prefix},predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': POST_size\n", - " },\n", - " 'outputs': [\n", - " {\n", - " 'id': biolink_subj_prefix,\n", - " 'semantic': biolink_subj ## output is subject\n", - " }\n", - " ],\n", - " 'predicate': biolink_inverse_pred, ## use inverse pred!\n", - " 'source': doublequote('infores:semmeddb'),\n", - " 'response_mapping': {\n", - " ## matches output as object\n", - " ## so umls-obj and ncbigene-obj are the response-mappings generated\n", - " \"$ref\": f'#/components/x-bte-response-mapping/{subj_prefix}-subj' }\n", - " }\n", - " ]\n", + " if biolink_inverse_qualified_pred:\n", + " temp[rev_op_name][0]['qualifiers'] = {\n", + " 'qualified_predicate': biolink_inverse_qualified_pred, ## use inverse pred!\n", + " ## use subject qualifiers\n", + " 'subject_aspect_qualifier': biolink_inverse_subj_asp, \n", + " 'subject_direction_qualifier': biolink_inverse_subj_direct \n", " }\n", " \n", " return temp" @@ -10138,12 +10227,12 @@ }, { "cell_type": "code", - "execution_count": 88, + "execution_count": 97, "id": "955b36a2", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:18:26.650679Z", - "start_time": "2023-08-15T20:18:26.634359Z" + "end_time": "2023-11-01T00:49:36.479854Z", + "start_time": "2023-11-01T00:49:36.463087Z" } }, "outputs": [ @@ -10445,7 +10534,7 @@ "[4322 rows x 15 columns]" ] }, - "execution_count": 88, + "execution_count": 97, "metadata": {}, "output_type": "execute_result" } @@ -10458,12 +10547,12 @@ }, { "cell_type": "code", - "execution_count": 89, + "execution_count": 98, "id": "98c5830f", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:20:43.340613Z", - "start_time": "2023-08-15T20:20:43.336156Z" + "end_time": "2023-11-01T00:49:39.033284Z", + "start_time": "2023-11-01T00:49:39.028807Z" } }, "outputs": [ @@ -10473,17 +10562,18 @@ "{'bpoc-LOCATION_OF-neop-rev': [{'supportBatch': True,\n", " 'useTemplating': True,\n", " 'inputs': [{'id': 'UMLS', 'semantic': 'Disease'}],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': '{\"q\": {{ queryInputs | replPrefix(\\'predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls AND pmid_count:>3 AND object.umls\\')| dump }}, \"scopes\": []}'},\n", + " 'requestBody': {'body': {'q': '{{ queryInputs }}',\n", + " 'scopes': 'object.umls'}},\n", " 'parameters': {'fields': 'subject.umls,predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': 1000},\n", + " 'size': 1000,\n", + " 'filter': 'predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls AND pmid_count:>3'},\n", " 'outputs': [{'id': 'UMLS', 'semantic': 'GrossAnatomicalStructure'}],\n", " 'predicate': 'located_in',\n", " 'source': 'infores:semmeddb',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-subj'}}]}" ] }, - "execution_count": 89, + "execution_count": 98, "metadata": {}, "output_type": "execute_result" } @@ -10500,12 +10590,12 @@ }, { "cell_type": "code", - "execution_count": 90, + "execution_count": 99, "id": "b251cb75", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:20:46.910134Z", - "start_time": "2023-08-15T20:20:46.905792Z" + "end_time": "2023-11-01T00:50:14.499220Z", + "start_time": "2023-11-01T00:50:14.494744Z" } }, "outputs": [ @@ -10515,17 +10605,18 @@ "{'gngm,ncbigene-ASSOCIATED_WITH-neop,umls-rev': [{'supportBatch': True,\n", " 'useTemplating': True,\n", " 'inputs': [{'id': 'UMLS', 'semantic': 'Disease'}],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': '{\"q\": {{ queryInputs | replPrefix(\\'predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls\\')| dump }}, \"scopes\": []}'},\n", + " 'requestBody': {'body': {'q': '{{ queryInputs }}',\n", + " 'scopes': 'object.umls'}},\n", " 'parameters': {'fields': 'subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': 1000},\n", + " 'size': 1000,\n", + " 'filter': 'predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene AND pmid_count:>3'},\n", " 'outputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", " 'predicate': 'related_to',\n", " 'source': 'infores:semmeddb',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-subj'}}]}" ] }, - "execution_count": 90, + "execution_count": 99, "metadata": {}, "output_type": "execute_result" } @@ -10542,12 +10633,12 @@ }, { "cell_type": "code", - "execution_count": 91, + "execution_count": 100, "id": "586ebf88", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:20:49.126484Z", - "start_time": "2023-08-15T20:20:49.122111Z" + "end_time": "2023-11-01T00:50:40.117067Z", + "start_time": "2023-11-01T00:50:40.112864Z" } }, "outputs": [ @@ -10557,20 +10648,21 @@ "{'aapp,umls-STIMULATES-gngm,ncbigene-rev': [{'supportBatch': True,\n", " 'useTemplating': True,\n", " 'inputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': '{\"q\": {{ queryInputs | replPrefix(\\'predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene\\')| dump }}, \"scopes\": []}'},\n", + " 'requestBody': {'body': {'q': '{{ queryInputs }}',\n", + " 'scopes': 'object.ncbigene'}},\n", " 'parameters': {'fields': 'subject.umls,predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': 1000},\n", + " 'size': 1000,\n", + " 'filter': 'predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls AND pmid_count:>3'},\n", " 'outputs': [{'id': 'UMLS', 'semantic': 'Polypeptide'}],\n", " 'predicate': 'affected_by',\n", + " 'source': 'infores:semmeddb',\n", + " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-subj'},\n", " 'qualifiers': {'qualified_predicate': 'caused_by',\n", " 'subject_aspect_qualifier': 'activity_or_abundance',\n", - " 'subject_direction_qualifier': 'increased'},\n", - " 'source': 'infores:semmeddb',\n", - " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-subj'}}]}" + " 'subject_direction_qualifier': 'increased'}}]}" ] }, - "execution_count": 91, + "execution_count": 100, "metadata": {}, "output_type": "execute_result" } @@ -10587,12 +10679,12 @@ }, { "cell_type": "code", - "execution_count": 92, + "execution_count": 101, "id": "a105373c", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:20:50.088268Z", - "start_time": "2023-08-15T20:20:50.083827Z" + "end_time": "2023-11-01T00:51:10.701738Z", + "start_time": "2023-11-01T00:51:10.697374Z" } }, "outputs": [ @@ -10602,20 +10694,21 @@ "{'gngm,ncbigene-STIMULATES-gngm,ncbigene-rev': [{'supportBatch': True,\n", " 'useTemplating': True,\n", " 'inputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': '{\"q\": {{ queryInputs | replPrefix(\\'predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene\\')| dump }}, \"scopes\": []}'},\n", + " 'requestBody': {'body': {'q': '{{ queryInputs }}',\n", + " 'scopes': 'object.ncbigene'}},\n", " 'parameters': {'fields': 'subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': 1000},\n", + " 'size': 1000,\n", + " 'filter': 'predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene AND pmid_count:>3'},\n", " 'outputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", " 'predicate': 'affected_by',\n", + " 'source': 'infores:semmeddb',\n", + " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-subj'},\n", " 'qualifiers': {'qualified_predicate': 'caused_by',\n", " 'subject_aspect_qualifier': 'activity_or_abundance',\n", - " 'subject_direction_qualifier': 'increased'},\n", - " 'source': 'infores:semmeddb',\n", - " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-subj'}}]}" + " 'subject_direction_qualifier': 'increased'}}]}" ] }, - "execution_count": 92, + "execution_count": 101, "metadata": {}, "output_type": "execute_result" } @@ -10640,12 +10733,12 @@ }, { "cell_type": "code", - "execution_count": 93, + "execution_count": 102, "id": "db9f9f81", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:20:53.578187Z", - "start_time": "2023-08-15T20:20:53.572115Z" + "end_time": "2023-11-01T00:51:41.118242Z", + "start_time": "2023-11-01T00:51:41.111198Z" } }, "outputs": [], @@ -10714,12 +10807,12 @@ }, { "cell_type": "code", - "execution_count": 94, + "execution_count": 103, "id": "3856781d", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:20:56.125361Z", - "start_time": "2023-08-15T20:20:56.082439Z" + "end_time": "2023-11-01T00:51:44.910116Z", + "start_time": "2023-11-01T00:51:44.792841Z" } }, "outputs": [], @@ -10729,12 +10822,12 @@ }, { "cell_type": "code", - "execution_count": 95, + "execution_count": 104, "id": "fdcd4202", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:20:58.133785Z", - "start_time": "2023-08-15T20:20:58.130239Z" + "end_time": "2023-11-01T00:51:46.527854Z", + "start_time": "2023-11-01T00:51:46.524319Z" } }, "outputs": [ @@ -10744,7 +10837,7 @@ "4715" ] }, - "execution_count": 95, + "execution_count": 104, "metadata": {}, "output_type": "execute_result" } @@ -10755,12 +10848,12 @@ }, { "cell_type": "code", - "execution_count": 96, + "execution_count": 106, "id": "5495d772", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:21:02.673600Z", - "start_time": "2023-08-15T20:21:02.669299Z" + "end_time": "2023-11-01T00:52:39.431821Z", + "start_time": "2023-11-01T00:52:39.427896Z" } }, "outputs": [ @@ -10768,24 +10861,24 @@ "name": "stdout", "output_type": "stream", "text": [ + "orch,umls-INHIBITS-gngm,ncbigene-rev\n", "[{'supportBatch': True,\n", " 'useTemplating': True,\n", " 'inputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", - " 'requestBodyType': 'object',\n", - " 'requestBody': {'body': '{\"q\": {{ queryInputs | '\n", - " \"replPrefix('predicate:INHIBITS AND \"\n", - " 'subject.semantic_type_abbreviation:orch AND '\n", - " '_exists_:subject.umls AND pmid_count:>3 AND '\n", - " 'object.ncbigene\\')| dump }}, \"scopes\": []}'},\n", + " 'requestBody': {'body': {'q': '{{ queryInputs }}',\n", + " 'scopes': 'object.ncbigene'}},\n", " 'parameters': {'fields': 'subject.umls,predication.pmid,predication.sentence,subject.name,object.name',\n", - " 'size': 1000},\n", + " 'size': 1000,\n", + " 'filter': 'predicate:INHIBITS AND '\n", + " 'subject.semantic_type_abbreviation:orch AND '\n", + " '_exists_:subject.umls AND pmid_count:>3'},\n", " 'outputs': [{'id': 'UMLS', 'semantic': 'SmallMolecule'}],\n", " 'predicate': 'affected_by',\n", + " 'source': 'infores:semmeddb',\n", + " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-subj'},\n", " 'qualifiers': {'qualified_predicate': 'caused_by',\n", " 'subject_aspect_qualifier': 'activity_or_abundance',\n", - " 'subject_direction_qualifier': 'decreased'},\n", - " 'source': 'infores:semmeddb',\n", - " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-subj'}}]\n" + " 'subject_direction_qualifier': 'decreased'}}]\n" ] } ], @@ -10793,6 +10886,7 @@ "## double-check qualifier + rev operation is written properly?\n", "for i in kgs_operations['x-bte-kgs-operations'].keys():\n", " if ('INHIBITS' in i) and ('rev' in i) and ('ncbigene' in i):\n", + " print(i)\n", " pprint.pprint(kgs_operations['x-bte-kgs-operations'][i], sort_dicts = False)\n", " break" ] @@ -10812,12 +10906,12 @@ }, { "cell_type": "code", - "execution_count": 97, + "execution_count": 107, "id": "239dce9d", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:21:15.942929Z", - "start_time": "2023-08-15T20:21:08.201354Z" + "end_time": "2023-11-01T00:53:30.164944Z", + "start_time": "2023-11-01T00:53:22.224706Z" } }, "outputs": [], @@ -10838,12 +10932,12 @@ }, { "cell_type": "code", - "execution_count": 98, + "execution_count": 108, "id": "27403608", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:21:17.547238Z", - "start_time": "2023-08-15T20:21:17.544226Z" + "end_time": "2023-11-01T00:53:32.886628Z", + "start_time": "2023-11-01T00:53:32.883648Z" } }, "outputs": [], @@ -10858,12 +10952,12 @@ }, { "cell_type": "code", - "execution_count": 99, + "execution_count": 109, "id": "4bec97ed", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:21:18.406427Z", - "start_time": "2023-08-15T20:21:18.403101Z" + "end_time": "2023-11-01T00:53:33.912604Z", + "start_time": "2023-11-01T00:53:33.909180Z" } }, "outputs": [], @@ -10873,12 +10967,12 @@ }, { "cell_type": "code", - "execution_count": 100, + "execution_count": 110, "id": "e64c34db", "metadata": { "ExecuteTime": { - "end_time": "2023-08-15T20:21:19.667397Z", - "start_time": "2023-08-15T20:21:19.101138Z" + "end_time": "2023-11-01T00:53:35.319258Z", + "start_time": "2023-11-01T00:53:34.753670Z" } }, "outputs": [], diff --git a/semmeddb/generated_operations.yaml b/semmeddb/generated_operations.yaml index c6879c04..0cf95fc2 100644 --- a/semmeddb/generated_operations.yaml +++ b/semmeddb/generated_operations.yaml @@ -5,15 +5,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27,15 +27,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -49,15 +49,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -71,15 +71,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -93,15 +93,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -115,15 +115,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -137,15 +137,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -159,15 +159,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -181,15 +181,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -203,15 +203,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -225,15 +225,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -247,15 +247,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -269,15 +269,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -291,15 +291,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -313,15 +313,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -335,15 +335,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -357,15 +357,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -379,15 +379,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -401,15 +401,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -423,15 +423,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -445,15 +445,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -467,15 +467,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -489,15 +489,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -511,15 +511,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -533,15 +533,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -555,15 +555,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -577,15 +577,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -599,15 +599,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -621,15 +621,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -643,15 +643,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -665,15 +665,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:celf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -687,15 +687,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -709,15 +709,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -731,15 +731,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -753,15 +753,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:medd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:medd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -775,15 +775,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -797,15 +797,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -819,15 +819,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -841,15 +841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -863,15 +863,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -885,15 +885,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -907,15 +907,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -929,15 +929,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -951,15 +951,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -973,15 +973,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -995,67 +995,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -1069,15 +1069,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -1091,15 +1091,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -1113,15 +1113,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -1135,15 +1135,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -1157,15 +1157,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -1179,15 +1179,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -1201,15 +1201,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -1223,15 +1223,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -1245,15 +1245,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -1267,15 +1267,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -1289,15 +1289,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -1311,15 +1311,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -1333,15 +1333,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -1355,15 +1355,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -1377,15 +1377,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -1399,15 +1399,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -1421,15 +1421,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -1443,15 +1443,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -1465,15 +1465,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -1487,15 +1487,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -1509,15 +1509,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -1531,15 +1531,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -1553,15 +1553,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -1575,15 +1575,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -1597,15 +1597,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -1619,15 +1619,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -1641,15 +1641,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -1663,15 +1663,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -1685,15 +1685,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -1707,15 +1707,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -1729,15 +1729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -1751,15 +1751,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -1773,15 +1773,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -1795,15 +1795,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -1817,15 +1817,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -1839,15 +1839,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -1861,15 +1861,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -1883,15 +1883,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -1905,15 +1905,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -1927,15 +1927,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bpoc AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -1949,15 +1949,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -1971,15 +1971,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:topp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -1993,15 +1993,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -2015,15 +2015,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -2037,15 +2037,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -2059,15 +2059,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -2081,15 +2081,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -2103,15 +2103,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -2125,15 +2125,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -2147,15 +2147,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -2169,15 +2169,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -2191,15 +2191,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -2213,15 +2213,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -2235,15 +2235,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -2257,67 +2257,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -2331,15 +2331,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -2353,15 +2353,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -2375,15 +2375,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -2397,15 +2397,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -2419,15 +2419,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -2441,15 +2441,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -2463,15 +2463,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -2485,15 +2485,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -2507,15 +2507,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -2529,15 +2529,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -2551,15 +2551,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -2573,15 +2573,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -2595,15 +2595,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -2617,15 +2617,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -2639,15 +2639,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -2661,67 +2661,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -2735,15 +2735,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -2757,15 +2757,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -2779,15 +2779,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -2801,67 +2801,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' medd-USES-phsu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -2875,15 +2875,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -2897,15 +2897,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -2919,15 +2919,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -2941,15 +2941,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -2963,15 +2963,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -2985,15 +2985,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -3007,15 +3007,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -3029,15 +3029,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -3051,15 +3051,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -3073,15 +3073,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -3095,15 +3095,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -3117,15 +3117,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:bpoc AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -3139,15 +3139,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -3161,15 +3161,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -3183,15 +3183,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -3205,15 +3205,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -3227,15 +3227,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -3249,15 +3249,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -3271,15 +3271,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -3293,15 +3293,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -3315,15 +3315,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -3337,15 +3337,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -3359,15 +3359,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -3381,15 +3381,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:medd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:medd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -3403,15 +3403,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -3425,15 +3425,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -3447,15 +3447,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -3469,15 +3469,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -3491,15 +3491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -3513,15 +3513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -3535,67 +3535,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -3609,15 +3609,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orgf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -3631,15 +3631,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -3653,15 +3653,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -3675,15 +3675,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -3697,15 +3697,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -3719,15 +3719,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -3741,15 +3741,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -3763,15 +3763,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -3785,15 +3785,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -3807,15 +3807,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -3829,15 +3829,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -3851,15 +3851,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -3873,15 +3873,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -3895,15 +3895,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -3917,15 +3917,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -3939,15 +3939,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -3961,15 +3961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -3983,15 +3983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -4005,15 +4005,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -4027,15 +4027,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -4049,15 +4049,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orgf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -4071,15 +4071,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -4093,67 +4093,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PROCESS_OF-bact: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -4167,15 +4167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -4189,15 +4189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -4211,15 +4211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -4233,15 +4233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -4255,15 +4255,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -4277,15 +4277,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -4299,15 +4299,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -4321,15 +4321,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -4343,15 +4343,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -4365,15 +4365,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -4387,15 +4387,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -4409,15 +4409,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -4431,15 +4431,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -4453,15 +4453,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:diap AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -4475,15 +4475,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -4497,15 +4497,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -4519,67 +4519,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-blor: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:blor - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:blor AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -4593,15 +4593,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -4615,15 +4615,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -4637,15 +4637,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -4659,15 +4659,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -4681,15 +4681,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -4703,15 +4703,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -4725,15 +4725,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -4747,15 +4747,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -4769,15 +4769,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -4791,15 +4791,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -4813,15 +4813,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -4835,15 +4835,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -4857,15 +4857,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bsoj AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -4879,15 +4879,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -4901,15 +4901,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -4923,15 +4923,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -4945,15 +4945,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -4967,15 +4967,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -4989,15 +4989,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -5011,15 +5011,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -5033,15 +5033,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -5055,15 +5055,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5077,15 +5077,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -5099,15 +5099,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -5121,15 +5121,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -5143,15 +5143,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5165,15 +5165,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:tisu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -5187,15 +5187,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -5209,15 +5209,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -5231,15 +5231,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -5253,15 +5253,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:ortf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -5275,15 +5275,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -5297,15 +5297,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -5319,15 +5319,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5341,15 +5341,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -5363,15 +5363,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -5385,15 +5385,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -5407,15 +5407,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5429,15 +5429,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -5451,67 +5451,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' virs-CAUSES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5525,15 +5525,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:virs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -5547,15 +5547,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -5569,15 +5569,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -5591,15 +5591,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -5613,41 +5613,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-CAUSES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5661,15 +5661,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -5683,15 +5683,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -5705,15 +5705,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -5727,15 +5727,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -5749,15 +5749,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -5771,15 +5771,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5793,15 +5793,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -5815,15 +5815,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5837,67 +5837,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-gngm,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-COEXISTS_WITH-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orgf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -5911,15 +5911,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orgf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -5933,15 +5933,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -5955,15 +5955,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -5977,15 +5977,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -5999,15 +5999,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -6021,15 +6021,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -6043,15 +6043,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -6065,15 +6065,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -6087,15 +6087,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6109,15 +6109,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:irda AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -6131,15 +6131,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -6153,15 +6153,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6175,15 +6175,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -6197,15 +6197,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -6219,15 +6219,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -6241,15 +6241,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6263,41 +6263,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-TREATS-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -6311,15 +6311,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6333,15 +6333,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6355,15 +6355,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6377,67 +6377,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6451,15 +6451,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -6473,15 +6473,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -6495,15 +6495,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -6517,15 +6517,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6539,15 +6539,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6561,15 +6561,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6583,15 +6583,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orga - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orga + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: OrganismAttribute @@ -6605,15 +6605,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6627,15 +6627,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -6649,15 +6649,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6671,15 +6671,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6693,15 +6693,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6715,15 +6715,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -6737,15 +6737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6759,15 +6759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -6781,15 +6781,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -6803,15 +6803,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6825,15 +6825,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -6847,15 +6847,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6869,15 +6869,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6891,15 +6891,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6913,15 +6913,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6935,41 +6935,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6983,15 +6983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -7005,15 +7005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7027,15 +7027,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -7049,15 +7049,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7071,15 +7071,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -7093,15 +7093,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -7115,15 +7115,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -7137,15 +7137,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -7159,15 +7159,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7181,15 +7181,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -7203,15 +7203,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -7225,15 +7225,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -7247,15 +7247,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7269,15 +7269,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7291,15 +7291,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -7313,15 +7313,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -7335,15 +7335,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -7357,15 +7357,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -7379,15 +7379,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -7401,15 +7401,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7423,15 +7423,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -7445,15 +7445,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -7467,15 +7467,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -7489,15 +7489,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -7511,15 +7511,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -7533,15 +7533,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7555,15 +7555,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:blor - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:blor AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -7577,15 +7577,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -7599,15 +7599,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -7621,15 +7621,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -7643,15 +7643,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -7665,15 +7665,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -7687,15 +7687,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7709,15 +7709,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -7731,15 +7731,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -7753,15 +7753,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7775,15 +7775,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7797,15 +7797,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7819,15 +7819,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -7841,15 +7841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bdsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -7863,15 +7863,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -7885,15 +7885,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -7907,15 +7907,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -7929,15 +7929,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7951,15 +7951,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7973,15 +7973,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7995,15 +7995,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8017,15 +8017,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8039,15 +8039,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8061,15 +8061,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -8083,15 +8083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8105,15 +8105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -8127,15 +8127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -8149,15 +8149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -8171,15 +8171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:plnt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:plnt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -8193,15 +8193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8215,15 +8215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -8237,15 +8237,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -8259,15 +8259,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -8281,15 +8281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8303,15 +8303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8325,15 +8325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -8347,15 +8347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8369,15 +8369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8391,15 +8391,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8413,15 +8413,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:plnt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:plnt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -8435,15 +8435,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -8457,93 +8457,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREDISPOSES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8557,15 +8557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -8579,15 +8579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -8601,15 +8601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -8623,15 +8623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -8645,15 +8645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -8667,15 +8667,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -8689,15 +8689,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -8711,15 +8711,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -8733,15 +8733,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -8755,15 +8755,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -8777,41 +8777,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -8825,67 +8825,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-cell,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-AFFECTS-phsf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -8899,15 +8899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8921,93 +8921,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch,umls-INHIBITS-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' orch,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9021,15 +9021,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9043,15 +9043,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9065,15 +9065,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -9087,15 +9087,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -9109,15 +9109,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -9131,15 +9131,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9153,15 +9153,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:blor - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:blor AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -9175,15 +9175,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -9197,15 +9197,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -9219,15 +9219,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -9241,15 +9241,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9263,15 +9263,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -9285,15 +9285,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9307,15 +9307,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -9329,15 +9329,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9351,15 +9351,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9373,15 +9373,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -9395,15 +9395,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -9417,67 +9417,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-moft,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' plnt-LOCATION_OF-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9491,15 +9491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -9513,15 +9513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9535,15 +9535,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -9557,15 +9557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -9579,15 +9579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:celf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -9601,15 +9601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:celf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -9623,67 +9623,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,ncbigene-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-PART_OF-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -9697,15 +9697,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -9719,15 +9719,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -9741,67 +9741,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-PROCESS_OF-aggp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:mobd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9815,15 +9815,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -9837,15 +9837,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9859,15 +9859,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -9881,15 +9881,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -9903,15 +9903,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9925,15 +9925,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -9947,15 +9947,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9969,15 +9969,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9991,15 +9991,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -10013,15 +10013,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -10035,15 +10035,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -10057,15 +10057,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -10079,15 +10079,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -10101,15 +10101,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -10123,15 +10123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -10145,15 +10145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -10167,15 +10167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -10189,67 +10189,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,umls-INHIBITS-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PART_OF-bpoc,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -10263,15 +10263,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -10285,15 +10285,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -10307,15 +10307,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -10329,15 +10329,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:plnt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:plnt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -10351,15 +10351,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -10373,15 +10373,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -10395,15 +10395,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -10417,15 +10417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -10439,15 +10439,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -10461,67 +10461,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10535,15 +10535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -10557,15 +10557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -10579,15 +10579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:biof AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -10601,15 +10601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -10623,41 +10623,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celf-CAUSES-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -10671,15 +10671,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -10693,15 +10693,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -10715,15 +10715,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -10737,15 +10737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -10759,15 +10759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -10781,15 +10781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -10803,15 +10803,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -10825,15 +10825,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -10847,15 +10847,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -10869,15 +10869,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -10891,15 +10891,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -10913,15 +10913,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -10935,15 +10935,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -10957,15 +10957,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10979,15 +10979,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11001,15 +11001,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -11023,15 +11023,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11045,15 +11045,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11067,15 +11067,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -11089,15 +11089,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -11111,15 +11111,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11133,15 +11133,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -11155,15 +11155,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -11177,15 +11177,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:neop AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11199,67 +11199,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-bpoc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -11273,15 +11273,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11295,67 +11295,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INHIBITS-aapp,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AFFECTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11369,67 +11369,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -11443,15 +11443,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -11465,15 +11465,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -11487,15 +11487,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -11509,15 +11509,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11531,15 +11531,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -11553,15 +11553,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11575,15 +11575,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11597,15 +11597,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:ortf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -11619,15 +11619,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11641,15 +11641,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11663,119 +11663,119 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-INHIBITS-gngm,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AUGMENTS-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11789,15 +11789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -11811,15 +11811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -11833,15 +11833,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -11855,15 +11855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11877,15 +11877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11899,15 +11899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -11921,15 +11921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -11943,15 +11943,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -11965,15 +11965,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11987,15 +11987,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12009,15 +12009,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:fngs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -12031,15 +12031,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -12053,15 +12053,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -12075,15 +12075,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -12097,15 +12097,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -12119,15 +12119,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -12141,119 +12141,119 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-PART_OF-virs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -12267,15 +12267,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -12289,67 +12289,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12363,15 +12363,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12385,15 +12385,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12407,15 +12407,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12429,15 +12429,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -12451,15 +12451,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -12473,15 +12473,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -12495,15 +12495,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12517,15 +12517,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12539,15 +12539,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -12561,15 +12561,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -12583,15 +12583,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -12605,15 +12605,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -12627,15 +12627,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -12649,15 +12649,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12671,15 +12671,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -12693,15 +12693,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -12715,67 +12715,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-inch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12789,15 +12789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12811,15 +12811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:food - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:food AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -12833,15 +12833,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -12855,15 +12855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -12877,15 +12877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -12899,15 +12899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -12921,15 +12921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12943,15 +12943,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12965,15 +12965,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -12987,15 +12987,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13009,15 +13009,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -13031,15 +13031,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -13053,15 +13053,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -13075,15 +13075,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -13097,15 +13097,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13119,15 +13119,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -13141,15 +13141,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -13163,15 +13163,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13185,15 +13185,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -13207,15 +13207,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13229,15 +13229,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -13251,15 +13251,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -13273,15 +13273,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -13295,15 +13295,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -13317,145 +13317,145 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INHIBITS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-STIMULATES-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orgf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' topp-STIMULATES-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PART_OF-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -13469,15 +13469,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -13491,15 +13491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -13513,15 +13513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -13535,15 +13535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -13557,15 +13557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13579,67 +13579,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-bpoc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -13653,15 +13653,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -13675,15 +13675,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -13697,15 +13697,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13719,15 +13719,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -13741,15 +13741,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -13763,15 +13763,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -13785,15 +13785,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -13807,15 +13807,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13829,15 +13829,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13851,15 +13851,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13873,15 +13873,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -13895,15 +13895,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13917,15 +13917,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13939,15 +13939,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -13961,15 +13961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13983,15 +13983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14005,67 +14005,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-COEXISTS_WITH-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -14079,15 +14079,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -14101,15 +14101,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -14123,15 +14123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14145,15 +14145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14167,15 +14167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14189,15 +14189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -14211,15 +14211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -14233,93 +14233,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt,umls-LOCATION_OF-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -14333,15 +14333,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -14355,41 +14355,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' neop-AFFECTS-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -14403,15 +14403,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -14425,15 +14425,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -14447,15 +14447,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14469,15 +14469,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -14491,15 +14491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:moft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -14513,15 +14513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14535,15 +14535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -14557,15 +14557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -14579,15 +14579,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -14601,15 +14601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:neop AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -14623,15 +14623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -14645,15 +14645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -14667,15 +14667,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -14689,15 +14689,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -14711,15 +14711,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -14733,15 +14733,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -14755,15 +14755,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -14777,15 +14777,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14799,15 +14799,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -14821,15 +14821,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -14843,15 +14843,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -14865,15 +14865,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -14887,15 +14887,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -14909,15 +14909,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -14931,15 +14931,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -14953,41 +14953,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -15001,41 +15001,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb-CAUSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15049,15 +15049,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15071,15 +15071,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -15093,15 +15093,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15115,15 +15115,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15137,41 +15137,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -15185,15 +15185,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15207,41 +15207,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PREDISPOSES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15255,15 +15255,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -15277,15 +15277,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15299,15 +15299,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -15321,15 +15321,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15343,67 +15343,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15417,15 +15417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -15439,67 +15439,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-fndg: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -15513,15 +15513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15535,15 +15535,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -15557,15 +15557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -15579,15 +15579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15601,15 +15601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -15623,15 +15623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -15645,15 +15645,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15667,15 +15667,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -15689,15 +15689,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -15711,15 +15711,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -15733,15 +15733,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -15755,15 +15755,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -15777,15 +15777,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -15799,15 +15799,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15821,15 +15821,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -15843,15 +15843,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -15865,15 +15865,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15887,15 +15887,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -15909,41 +15909,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -15957,15 +15957,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15979,15 +15979,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -16001,15 +16001,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -16023,67 +16023,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-celf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' hops-COEXISTS_WITH-inch-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16097,15 +16097,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -16119,15 +16119,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -16141,15 +16141,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -16163,15 +16163,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16185,15 +16185,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16207,15 +16207,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -16229,15 +16229,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -16251,15 +16251,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -16273,15 +16273,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:ortf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -16295,15 +16295,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -16317,15 +16317,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -16339,15 +16339,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -16361,15 +16361,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16383,15 +16383,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -16405,15 +16405,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -16427,15 +16427,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16449,15 +16449,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -16471,15 +16471,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -16493,15 +16493,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -16515,15 +16515,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16537,15 +16537,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -16559,15 +16559,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16581,15 +16581,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -16603,15 +16603,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -16625,15 +16625,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -16647,15 +16647,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:fndg + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -16669,15 +16669,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bdsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -16691,15 +16691,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16713,67 +16713,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-INTERACTS_WITH-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -16787,15 +16787,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -16809,15 +16809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -16831,15 +16831,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -16853,41 +16853,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-PROCESS_OF-aggp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -16901,15 +16901,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:sosy AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -16923,15 +16923,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -16945,15 +16945,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -16967,15 +16967,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16989,15 +16989,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -17011,15 +17011,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -17033,67 +17033,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm,ncbigene-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-COEXISTS_WITH-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17107,15 +17107,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -17129,15 +17129,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -17151,15 +17151,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -17173,15 +17173,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -17195,15 +17195,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -17217,15 +17217,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -17239,15 +17239,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -17261,15 +17261,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -17283,15 +17283,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -17305,15 +17305,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -17327,15 +17327,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -17349,15 +17349,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -17371,15 +17371,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -17393,15 +17393,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -17415,15 +17415,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -17437,15 +17437,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -17459,15 +17459,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -17481,15 +17481,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -17503,15 +17503,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -17525,15 +17525,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -17547,15 +17547,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17569,15 +17569,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -17591,15 +17591,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -17613,15 +17613,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -17635,15 +17635,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -17657,15 +17657,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -17679,15 +17679,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -17701,67 +17701,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bact-PRODUCES-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17775,15 +17775,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -17797,15 +17797,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orga - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orga AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: OrganismAttribute @@ -17819,15 +17819,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -17841,15 +17841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -17863,15 +17863,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17885,15 +17885,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17907,15 +17907,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -17929,15 +17929,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17951,15 +17951,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17973,15 +17973,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17995,15 +17995,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18017,15 +18017,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18039,15 +18039,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18061,15 +18061,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -18083,15 +18083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18105,15 +18105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -18127,15 +18127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18149,15 +18149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18171,15 +18171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -18193,15 +18193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:celc AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -18215,15 +18215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -18237,41 +18237,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' phsu-CAUSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18285,15 +18285,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18307,15 +18307,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -18329,15 +18329,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18351,15 +18351,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -18373,15 +18373,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -18395,15 +18395,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18417,15 +18417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -18439,15 +18439,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18461,15 +18461,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -18483,15 +18483,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -18505,15 +18505,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -18527,15 +18527,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18549,15 +18549,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -18571,15 +18571,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -18593,15 +18593,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18615,15 +18615,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18637,41 +18637,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' carb-CAUSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18685,15 +18685,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18707,15 +18707,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18729,15 +18729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18751,15 +18751,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -18773,15 +18773,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -18795,15 +18795,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18817,15 +18817,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -18839,15 +18839,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -18861,15 +18861,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18883,15 +18883,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -18905,15 +18905,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -18927,15 +18927,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -18949,15 +18949,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -18971,15 +18971,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18993,15 +18993,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19015,15 +19015,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -19037,15 +19037,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19059,15 +19059,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19081,15 +19081,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19103,15 +19103,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -19125,15 +19125,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -19147,15 +19147,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19169,15 +19169,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -19191,15 +19191,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -19213,15 +19213,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19235,15 +19235,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19257,15 +19257,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19279,15 +19279,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -19301,15 +19301,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19323,15 +19323,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -19345,15 +19345,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -19367,15 +19367,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19389,15 +19389,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -19411,15 +19411,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19433,15 +19433,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19455,15 +19455,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -19477,15 +19477,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -19499,41 +19499,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' moft-CAUSES-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -19547,15 +19547,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -19569,15 +19569,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19591,15 +19591,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19613,15 +19613,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -19635,15 +19635,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -19657,15 +19657,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19679,67 +19679,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INHIBITS-ortf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -19753,15 +19753,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -19775,15 +19775,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -19797,15 +19797,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -19819,15 +19819,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -19841,15 +19841,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -19863,15 +19863,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -19885,41 +19885,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fngs,umls-LOCATION_OF-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -19933,15 +19933,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -19955,15 +19955,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19977,15 +19977,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orga - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orga AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: OrganismAttribute @@ -19999,15 +19999,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20021,15 +20021,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20043,15 +20043,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -20065,15 +20065,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -20087,41 +20087,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs,ncbigene-PART_OF-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -20135,15 +20135,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -20157,15 +20157,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -20179,15 +20179,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -20201,15 +20201,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20223,15 +20223,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20245,15 +20245,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -20267,15 +20267,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -20289,15 +20289,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20311,15 +20311,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20333,15 +20333,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -20355,15 +20355,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20377,15 +20377,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -20399,15 +20399,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20421,15 +20421,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -20443,15 +20443,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20465,15 +20465,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -20487,15 +20487,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -20509,41 +20509,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -20557,15 +20557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -20579,15 +20579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20601,15 +20601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -20623,15 +20623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -20645,15 +20645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -20667,15 +20667,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -20689,15 +20689,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20711,15 +20711,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20733,15 +20733,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -20755,15 +20755,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -20777,15 +20777,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -20799,15 +20799,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20821,67 +20821,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-elii: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20895,15 +20895,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -20917,15 +20917,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -20939,15 +20939,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -20961,15 +20961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orgf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -20983,41 +20983,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -21031,15 +21031,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21053,15 +21053,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -21075,15 +21075,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -21097,15 +21097,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -21119,15 +21119,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -21141,15 +21141,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -21163,15 +21163,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21185,41 +21185,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PART_OF-fngs,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -21233,15 +21233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21255,15 +21255,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -21277,15 +21277,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21299,15 +21299,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -21321,15 +21321,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21343,67 +21343,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-PRECEDES-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -21417,15 +21417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -21439,15 +21439,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -21461,15 +21461,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21483,15 +21483,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21505,41 +21505,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21553,15 +21553,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -21575,15 +21575,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21597,15 +21597,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -21619,15 +21619,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:inpo AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -21641,67 +21641,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -21715,15 +21715,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -21737,15 +21737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -21759,15 +21759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21781,15 +21781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -21803,15 +21803,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -21825,15 +21825,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21847,15 +21847,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -21869,15 +21869,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21891,15 +21891,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -21913,15 +21913,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -21935,15 +21935,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -21957,15 +21957,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21979,15 +21979,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22001,15 +22001,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -22023,15 +22023,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22045,15 +22045,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -22067,15 +22067,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -22089,15 +22089,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -22111,15 +22111,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -22133,15 +22133,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22155,119 +22155,119 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,ncbigene-INHIBITS-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nsba-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-STIMULATES-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm,umls-INTERACTS_WITH-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -22281,15 +22281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -22303,15 +22303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:moft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -22325,15 +22325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22347,15 +22347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22369,15 +22369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -22391,15 +22391,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22413,15 +22413,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -22435,15 +22435,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22457,15 +22457,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22479,15 +22479,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22501,15 +22501,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -22523,15 +22523,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -22545,15 +22545,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -22567,41 +22567,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' carb-ASSOCIATED_WITH-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22615,15 +22615,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22637,15 +22637,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -22659,15 +22659,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -22681,15 +22681,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -22703,15 +22703,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -22725,15 +22725,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22747,15 +22747,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -22769,15 +22769,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -22791,15 +22791,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22813,15 +22813,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -22835,15 +22835,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -22857,67 +22857,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PREDISPOSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22931,15 +22931,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -22953,15 +22953,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22975,15 +22975,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:neop AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22997,15 +22997,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -23019,15 +23019,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -23041,15 +23041,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -23063,15 +23063,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -23085,15 +23085,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -23107,67 +23107,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23181,41 +23181,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -23229,15 +23229,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -23251,15 +23251,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23273,15 +23273,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23295,15 +23295,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -23317,15 +23317,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -23339,15 +23339,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23361,15 +23361,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -23383,15 +23383,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -23405,41 +23405,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-COEXISTS_WITH-phsf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -23453,41 +23453,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-ASSOCIATED_WITH-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -23501,15 +23501,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -23523,15 +23523,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -23545,41 +23545,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -23593,41 +23593,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' moft-AFFECTS-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -23641,15 +23641,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -23663,15 +23663,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -23685,15 +23685,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -23707,15 +23707,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -23729,15 +23729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -23751,15 +23751,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -23773,15 +23773,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inbe - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inbe AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -23795,15 +23795,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23817,15 +23817,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -23839,15 +23839,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -23861,15 +23861,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -23883,15 +23883,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -23905,15 +23905,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23927,15 +23927,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -23949,41 +23949,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -23997,15 +23997,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -24019,67 +24019,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREDISPOSES-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -24093,15 +24093,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -24115,15 +24115,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24137,15 +24137,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -24159,15 +24159,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24181,15 +24181,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24203,41 +24203,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' comd-AFFECTS-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -24251,15 +24251,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24273,15 +24273,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24295,15 +24295,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -24317,15 +24317,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:orgf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -24339,15 +24339,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24361,15 +24361,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sosy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -24383,15 +24383,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -24405,15 +24405,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24427,15 +24427,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24449,15 +24449,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24471,15 +24471,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -24493,15 +24493,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -24515,15 +24515,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24537,15 +24537,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -24559,15 +24559,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24581,15 +24581,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -24603,15 +24603,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24625,67 +24625,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-bacs,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp,ncbigene-PART_OF-fngs,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -24699,41 +24699,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24747,15 +24747,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24769,15 +24769,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -24791,15 +24791,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -24813,15 +24813,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -24835,15 +24835,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -24857,15 +24857,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24879,41 +24879,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -24927,15 +24927,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -24949,15 +24949,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -24971,15 +24971,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -24993,15 +24993,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -25015,15 +25015,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25037,15 +25037,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25059,15 +25059,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -25081,15 +25081,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25103,15 +25103,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25125,15 +25125,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25147,15 +25147,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -25169,15 +25169,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -25191,15 +25191,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -25213,15 +25213,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -25235,15 +25235,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -25257,15 +25257,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -25279,15 +25279,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25301,15 +25301,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -25323,15 +25323,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -25345,15 +25345,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bdsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -25367,15 +25367,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25389,15 +25389,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -25411,15 +25411,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -25433,15 +25433,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -25455,15 +25455,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -25477,15 +25477,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -25499,15 +25499,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25521,15 +25521,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25543,15 +25543,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25565,15 +25565,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -25587,15 +25587,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25609,15 +25609,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -25631,15 +25631,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -25653,15 +25653,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25675,15 +25675,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25697,15 +25697,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25719,15 +25719,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -25741,15 +25741,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25763,15 +25763,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25785,15 +25785,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -25807,67 +25807,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PROCESS_OF-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -25881,15 +25881,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -25903,15 +25903,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -25925,15 +25925,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -25947,15 +25947,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25969,15 +25969,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inbe - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inbe AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -25991,15 +25991,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inbe - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inbe AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -26013,15 +26013,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26035,15 +26035,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26057,15 +26057,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -26079,67 +26079,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-AFFECTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -26153,15 +26153,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26175,15 +26175,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -26197,15 +26197,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -26219,15 +26219,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26241,41 +26241,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26289,15 +26289,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -26311,15 +26311,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -26333,41 +26333,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26381,15 +26381,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26403,15 +26403,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -26425,15 +26425,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26447,15 +26447,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -26469,15 +26469,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -26491,15 +26491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -26513,15 +26513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26535,15 +26535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26557,15 +26557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26579,15 +26579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -26601,15 +26601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -26623,15 +26623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26645,15 +26645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26667,15 +26667,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26689,15 +26689,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26711,15 +26711,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26733,15 +26733,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -26755,15 +26755,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26777,15 +26777,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -26799,15 +26799,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -26821,15 +26821,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26843,67 +26843,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' neop-AFFECTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26917,15 +26917,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -26939,15 +26939,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -26961,15 +26961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26983,15 +26983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27005,15 +27005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -27027,67 +27027,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27101,15 +27101,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -27123,15 +27123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27145,41 +27145,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INTERACTS_WITH-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27193,15 +27193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27215,15 +27215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27237,41 +27237,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREVENTS-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27285,15 +27285,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -27307,15 +27307,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -27329,15 +27329,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -27351,15 +27351,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -27373,15 +27373,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -27395,15 +27395,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -27417,15 +27417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27439,15 +27439,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -27461,15 +27461,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27483,15 +27483,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -27505,15 +27505,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -27527,41 +27527,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -27575,15 +27575,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -27597,15 +27597,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27619,15 +27619,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -27641,15 +27641,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -27663,15 +27663,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27685,15 +27685,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27707,15 +27707,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27729,15 +27729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27751,15 +27751,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27773,15 +27773,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27795,15 +27795,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -27817,15 +27817,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27839,15 +27839,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -27861,15 +27861,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -27883,15 +27883,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27905,15 +27905,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -27927,15 +27927,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27949,15 +27949,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27971,67 +27971,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -28045,15 +28045,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -28067,15 +28067,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28089,15 +28089,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -28111,15 +28111,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28133,15 +28133,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -28155,15 +28155,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -28177,15 +28177,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28199,15 +28199,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28221,15 +28221,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:food AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -28243,15 +28243,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -28265,15 +28265,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28287,15 +28287,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28309,15 +28309,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -28331,15 +28331,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -28353,15 +28353,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -28375,15 +28375,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -28397,15 +28397,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -28419,15 +28419,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28441,15 +28441,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28463,15 +28463,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -28485,15 +28485,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -28507,15 +28507,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28529,15 +28529,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28551,15 +28551,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -28573,15 +28573,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -28595,15 +28595,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -28617,15 +28617,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -28639,15 +28639,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28661,15 +28661,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -28683,15 +28683,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28705,15 +28705,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -28727,15 +28727,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -28749,15 +28749,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28771,15 +28771,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28793,15 +28793,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -28815,15 +28815,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -28837,15 +28837,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -28859,15 +28859,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -28881,15 +28881,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -28903,15 +28903,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28925,41 +28925,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -28973,15 +28973,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -28995,67 +28995,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AUGMENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29069,15 +29069,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29091,15 +29091,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -29113,15 +29113,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -29135,15 +29135,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -29157,41 +29157,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' virs-CAUSES-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -29205,15 +29205,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:virs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -29227,15 +29227,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -29249,15 +29249,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29271,15 +29271,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29293,15 +29293,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -29315,15 +29315,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29337,15 +29337,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -29359,15 +29359,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -29381,15 +29381,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -29403,41 +29403,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -29451,41 +29451,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-ASSOCIATED_WITH-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29499,15 +29499,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -29521,15 +29521,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29543,15 +29543,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29565,15 +29565,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -29587,15 +29587,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29609,15 +29609,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29631,15 +29631,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29653,67 +29653,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' inch-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29727,15 +29727,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29749,15 +29749,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29771,15 +29771,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -29793,67 +29793,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-aapp,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-PREDISPOSES-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -29867,15 +29867,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -29889,41 +29889,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -29937,15 +29937,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -29959,15 +29959,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29981,15 +29981,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -30003,15 +30003,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -30025,15 +30025,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -30047,15 +30047,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -30069,15 +30069,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inbe - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inbe AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -30091,15 +30091,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30113,41 +30113,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30161,15 +30161,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -30183,15 +30183,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:mobd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30205,41 +30205,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-antb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30253,15 +30253,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30275,15 +30275,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30297,15 +30297,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -30319,15 +30319,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -30341,15 +30341,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -30363,15 +30363,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -30385,15 +30385,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30407,15 +30407,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30429,15 +30429,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -30451,15 +30451,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -30473,15 +30473,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -30495,15 +30495,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30517,15 +30517,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30539,15 +30539,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -30561,15 +30561,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -30583,41 +30583,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -30631,41 +30631,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-moft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -30679,15 +30679,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -30701,41 +30701,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30749,15 +30749,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30771,15 +30771,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30793,41 +30793,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' emst-PART_OF-bact: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -30841,15 +30841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -30863,15 +30863,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -30885,15 +30885,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30907,15 +30907,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30929,15 +30929,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -30951,15 +30951,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30973,15 +30973,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30995,15 +30995,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -31017,15 +31017,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31039,15 +31039,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31061,15 +31061,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -31083,15 +31083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -31105,15 +31105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -31127,15 +31127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -31149,15 +31149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -31171,15 +31171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -31193,15 +31193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -31215,15 +31215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31237,41 +31237,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AFFECTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31285,41 +31285,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31333,15 +31333,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -31355,15 +31355,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31377,15 +31377,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -31399,15 +31399,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -31421,15 +31421,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -31443,15 +31443,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31465,15 +31465,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31487,15 +31487,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -31509,15 +31509,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -31531,15 +31531,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31553,15 +31553,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31575,41 +31575,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-comd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31623,15 +31623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31645,15 +31645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -31667,15 +31667,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31689,41 +31689,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' vita-ASSOCIATED_WITH-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31737,15 +31737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31759,15 +31759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31781,15 +31781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31803,15 +31803,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31825,15 +31825,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31847,15 +31847,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -31869,15 +31869,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -31891,15 +31891,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -31913,15 +31913,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -31935,15 +31935,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -31957,41 +31957,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dora-PREDISPOSES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32005,15 +32005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dora AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -32027,41 +32027,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PART_OF-fngs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -32075,15 +32075,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -32097,15 +32097,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32119,15 +32119,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:sosy AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -32141,15 +32141,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32163,15 +32163,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -32185,15 +32185,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32207,15 +32207,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32229,15 +32229,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32251,15 +32251,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -32273,15 +32273,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -32295,15 +32295,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:clnd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:clnd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -32317,15 +32317,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -32339,15 +32339,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -32361,15 +32361,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inbe - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inbe AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -32383,15 +32383,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -32405,15 +32405,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -32427,15 +32427,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -32449,15 +32449,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -32471,41 +32471,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-ADMINISTERED_TO-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32519,15 +32519,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32541,15 +32541,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32563,15 +32563,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -32585,15 +32585,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32607,41 +32607,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-CAUSES-orgf,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -32655,15 +32655,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32677,15 +32677,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -32699,15 +32699,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32721,15 +32721,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32743,15 +32743,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32765,15 +32765,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32787,15 +32787,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32809,15 +32809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -32831,15 +32831,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32853,15 +32853,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -32875,15 +32875,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -32897,15 +32897,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -32919,41 +32919,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celf-COEXISTS_WITH-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32967,15 +32967,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:celf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -32989,15 +32989,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -33011,15 +33011,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33033,15 +33033,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33055,15 +33055,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -33077,15 +33077,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -33099,15 +33099,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -33121,15 +33121,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:inbe - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:inbe AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -33143,15 +33143,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33165,15 +33165,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -33187,15 +33187,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -33209,41 +33209,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' anab-LOCATION_OF-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33257,41 +33257,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm-PREVENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33305,15 +33305,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -33327,15 +33327,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sosy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -33349,15 +33349,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33371,15 +33371,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -33393,15 +33393,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -33415,15 +33415,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33437,15 +33437,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -33459,15 +33459,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33481,15 +33481,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -33503,15 +33503,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -33525,119 +33525,119 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-bpoc,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AUGMENTS-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-CAUSES-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33651,15 +33651,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33673,15 +33673,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -33695,15 +33695,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -33717,15 +33717,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -33739,15 +33739,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33761,15 +33761,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -33783,15 +33783,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -33805,15 +33805,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33827,15 +33827,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33849,41 +33849,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-INTERACTS_WITH-nsba-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33897,15 +33897,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33919,15 +33919,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33941,41 +33941,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-CAUSES-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33989,15 +33989,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34011,41 +34011,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -34059,15 +34059,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -34081,15 +34081,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34103,41 +34103,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-COEXISTS_WITH-gngm,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34151,15 +34151,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34173,15 +34173,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34195,15 +34195,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -34217,15 +34217,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -34239,15 +34239,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -34261,15 +34261,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -34283,15 +34283,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34305,15 +34305,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34327,15 +34327,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34349,41 +34349,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' comd-COEXISTS_WITH-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34397,41 +34397,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-ASSOCIATED_WITH-mobd,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34445,41 +34445,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INTERACTS_WITH-cell,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34493,15 +34493,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34515,15 +34515,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34537,41 +34537,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-CAUSES-patf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34585,15 +34585,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34607,15 +34607,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34629,15 +34629,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34651,41 +34651,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34699,15 +34699,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -34721,93 +34721,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-ortf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' diap-CAUSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -34821,67 +34821,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-nsba: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34895,15 +34895,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34917,15 +34917,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -34939,15 +34939,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -34961,15 +34961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34983,15 +34983,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -35005,15 +35005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35027,15 +35027,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -35049,15 +35049,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35071,15 +35071,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35093,15 +35093,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -35115,15 +35115,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -35137,15 +35137,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35159,15 +35159,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -35181,15 +35181,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -35203,15 +35203,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35225,15 +35225,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -35247,15 +35247,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35269,15 +35269,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -35291,15 +35291,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sosy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -35313,15 +35313,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35335,41 +35335,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CONVERTS_TO-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35383,15 +35383,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35405,15 +35405,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -35427,15 +35427,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -35449,15 +35449,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35471,41 +35471,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -35519,15 +35519,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35541,15 +35541,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35563,15 +35563,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35585,15 +35585,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35607,15 +35607,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35629,15 +35629,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -35651,15 +35651,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35673,15 +35673,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -35695,15 +35695,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35717,15 +35717,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:ortf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -35739,15 +35739,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -35761,15 +35761,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -35783,15 +35783,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35805,15 +35805,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -35827,15 +35827,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -35849,41 +35849,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-COEXISTS_WITH-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35897,15 +35897,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35919,15 +35919,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35941,15 +35941,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35963,15 +35963,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -35985,15 +35985,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:inpo AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -36007,15 +36007,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -36029,15 +36029,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -36051,15 +36051,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -36073,15 +36073,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -36095,15 +36095,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -36117,15 +36117,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -36139,15 +36139,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -36161,15 +36161,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -36183,15 +36183,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -36205,15 +36205,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -36227,15 +36227,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -36249,15 +36249,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36271,15 +36271,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -36293,41 +36293,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36341,15 +36341,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -36363,15 +36363,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -36385,41 +36385,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -36433,15 +36433,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -36455,15 +36455,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -36477,15 +36477,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -36499,15 +36499,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -36521,41 +36521,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dora-TREATS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -36569,15 +36569,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -36591,15 +36591,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -36613,15 +36613,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -36635,67 +36635,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-phsu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PRODUCES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -36709,15 +36709,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -36731,15 +36731,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -36753,15 +36753,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36775,119 +36775,119 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36901,15 +36901,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -36923,15 +36923,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36945,15 +36945,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -36967,15 +36967,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -36989,15 +36989,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -37011,15 +37011,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37033,15 +37033,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -37055,93 +37055,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-INHIBITS-bacs,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INHIBITS-bacs,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-COEXISTS_WITH-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37155,15 +37155,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37177,15 +37177,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37199,15 +37199,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -37221,15 +37221,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -37243,15 +37243,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37265,15 +37265,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37287,15 +37287,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37309,15 +37309,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:celf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -37331,15 +37331,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37353,15 +37353,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37375,15 +37375,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -37397,15 +37397,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -37419,15 +37419,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37441,15 +37441,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -37463,15 +37463,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -37485,15 +37485,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -37507,15 +37507,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37529,67 +37529,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AUGMENTS-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-COEXISTS_WITH-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37603,15 +37603,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37625,15 +37625,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37647,41 +37647,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37695,15 +37695,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37717,15 +37717,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37739,41 +37739,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37787,15 +37787,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37809,15 +37809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37831,67 +37831,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-STIMULATES-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -37905,15 +37905,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37927,15 +37927,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37949,41 +37949,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PART_OF-fngs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -37997,15 +37997,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -38019,15 +38019,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38041,67 +38041,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38115,41 +38115,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-COEXISTS_WITH-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -38163,15 +38163,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -38185,41 +38185,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,ncbigene-CAUSES-celf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -38233,15 +38233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38255,41 +38255,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-comd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38303,15 +38303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -38325,15 +38325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38347,15 +38347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -38369,15 +38369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -38391,15 +38391,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38413,15 +38413,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -38435,15 +38435,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38457,15 +38457,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38479,15 +38479,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -38501,15 +38501,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -38523,15 +38523,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -38545,15 +38545,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -38567,15 +38567,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -38589,15 +38589,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38611,15 +38611,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38633,15 +38633,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38655,15 +38655,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38677,15 +38677,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -38699,15 +38699,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -38721,15 +38721,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -38743,15 +38743,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -38765,15 +38765,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -38787,15 +38787,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38809,15 +38809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38831,15 +38831,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38853,15 +38853,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -38875,41 +38875,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AFFECTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38923,15 +38923,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38945,15 +38945,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38967,15 +38967,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38989,67 +38989,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-nsba: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39063,15 +39063,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39085,67 +39085,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39159,41 +39159,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREDISPOSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39207,15 +39207,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -39229,15 +39229,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39251,15 +39251,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39273,41 +39273,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -39321,15 +39321,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39343,15 +39343,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39365,15 +39365,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39387,15 +39387,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -39409,15 +39409,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -39431,15 +39431,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39453,15 +39453,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -39475,15 +39475,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39497,67 +39497,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COEXISTS_WITH-inpo-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39571,67 +39571,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-STIMULATES-inch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-PRODUCES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -39645,41 +39645,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' phsu,ncbigene-TREATS-neop,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39693,15 +39693,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39715,15 +39715,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -39737,15 +39737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -39759,15 +39759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39781,15 +39781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39803,15 +39803,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -39825,15 +39825,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -39847,15 +39847,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -39869,15 +39869,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39891,15 +39891,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39913,15 +39913,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -39935,15 +39935,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39957,15 +39957,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39979,15 +39979,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -40001,15 +40001,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -40023,93 +40023,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -40123,15 +40123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -40145,15 +40145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40167,15 +40167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -40189,15 +40189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40211,15 +40211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40233,15 +40233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40255,67 +40255,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INHIBITS-horm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -40329,15 +40329,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -40351,41 +40351,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' patf-ASSOCIATED_WITH-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -40399,15 +40399,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -40421,15 +40421,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40443,15 +40443,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40465,15 +40465,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40487,15 +40487,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40509,15 +40509,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -40531,15 +40531,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -40553,41 +40553,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -40601,15 +40601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -40623,15 +40623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40645,15 +40645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40667,15 +40667,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40689,15 +40689,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -40711,15 +40711,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -40733,41 +40733,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-CAUSES-comd,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40781,15 +40781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40803,41 +40803,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' antb-TREATS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40851,41 +40851,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-emst: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -40899,15 +40899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -40921,15 +40921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40943,15 +40943,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40965,15 +40965,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40987,15 +40987,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41009,15 +41009,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41031,41 +41031,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -41079,15 +41079,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41101,15 +41101,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -41123,15 +41123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -41145,15 +41145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -41167,15 +41167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41189,15 +41189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -41211,15 +41211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -41233,15 +41233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -41255,15 +41255,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41277,41 +41277,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -41325,15 +41325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -41347,15 +41347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -41369,41 +41369,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-PART_OF-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -41417,15 +41417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -41439,15 +41439,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -41461,15 +41461,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41483,15 +41483,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -41505,15 +41505,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -41527,15 +41527,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -41549,15 +41549,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:nusq AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -41571,15 +41571,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41593,15 +41593,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41615,15 +41615,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -41637,15 +41637,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -41659,41 +41659,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-INTERACTS_WITH-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41707,15 +41707,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -41729,15 +41729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41751,41 +41751,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-COEXISTS_WITH-elii: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41799,67 +41799,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41873,15 +41873,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bodm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -41895,15 +41895,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -41917,15 +41917,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -41939,15 +41939,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -41961,15 +41961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41983,15 +41983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -42005,15 +42005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -42027,15 +42027,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42049,15 +42049,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -42071,41 +42071,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-CAUSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42119,15 +42119,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42141,15 +42141,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42163,15 +42163,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -42185,15 +42185,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -42207,15 +42207,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -42229,15 +42229,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42251,15 +42251,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42273,15 +42273,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42295,41 +42295,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PART_OF-aggp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -42343,15 +42343,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -42365,15 +42365,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42387,15 +42387,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42409,15 +42409,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42431,119 +42431,119 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-tisu-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-INHIBITS-elii: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-nnon: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42557,67 +42557,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREDISPOSES-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42631,15 +42631,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42653,15 +42653,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -42675,15 +42675,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -42697,41 +42697,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42745,67 +42745,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CAUSES-biof: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -42819,15 +42819,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42841,15 +42841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -42863,15 +42863,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -42885,15 +42885,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -42907,15 +42907,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -42929,15 +42929,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -42951,15 +42951,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42973,15 +42973,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -42995,67 +42995,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-comd-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-PREDISPOSES-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43069,41 +43069,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-biof: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:biof AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -43117,15 +43117,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -43139,15 +43139,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43161,41 +43161,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-inch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43209,15 +43209,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43231,15 +43231,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43253,15 +43253,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43275,15 +43275,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43297,41 +43297,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43345,15 +43345,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -43367,15 +43367,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -43389,15 +43389,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -43411,15 +43411,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43433,15 +43433,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43455,15 +43455,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43477,15 +43477,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43499,15 +43499,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -43521,15 +43521,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -43543,15 +43543,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -43565,15 +43565,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -43587,15 +43587,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43609,41 +43609,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43657,15 +43657,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -43679,15 +43679,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -43701,15 +43701,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -43723,15 +43723,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -43745,15 +43745,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -43767,15 +43767,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -43789,15 +43789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43811,15 +43811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43833,41 +43833,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -43881,15 +43881,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -43903,15 +43903,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43925,15 +43925,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43947,15 +43947,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43969,15 +43969,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43991,41 +43991,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44039,15 +44039,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44061,15 +44061,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44083,15 +44083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -44105,15 +44105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44127,15 +44127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44149,15 +44149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44171,15 +44171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -44193,15 +44193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -44215,15 +44215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -44237,15 +44237,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44259,41 +44259,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44307,15 +44307,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -44329,15 +44329,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -44351,15 +44351,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -44373,15 +44373,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44395,15 +44395,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -44417,67 +44417,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-ASSOCIATED_WITH-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44491,15 +44491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -44513,15 +44513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bodm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -44535,15 +44535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44557,15 +44557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -44579,15 +44579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -44601,41 +44601,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bodm-INTERACTS_WITH-bodm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -44649,15 +44649,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -44671,41 +44671,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -44719,15 +44719,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -44741,15 +44741,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -44763,41 +44763,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-PROCESS_OF-emod-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:ortf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -44811,15 +44811,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -44833,15 +44833,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44855,15 +44855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -44877,15 +44877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:phsu AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -44899,15 +44899,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -44921,15 +44921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -44943,15 +44943,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -44965,15 +44965,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -44987,15 +44987,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45009,41 +45009,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PART_OF-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -45057,15 +45057,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45079,41 +45079,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45127,15 +45127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -45149,15 +45149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45171,15 +45171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45193,15 +45193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45215,15 +45215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45237,15 +45237,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45259,15 +45259,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45281,15 +45281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45303,15 +45303,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -45325,15 +45325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -45347,15 +45347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45369,41 +45369,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45417,67 +45417,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-INHIBITS-nsba-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRECEDES-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -45491,15 +45491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45513,15 +45513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45535,15 +45535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45557,15 +45557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lbtr AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -45579,15 +45579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45601,15 +45601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45623,15 +45623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45645,67 +45645,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INHIBITS-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' moft-AFFECTS-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -45719,15 +45719,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -45741,15 +45741,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45763,15 +45763,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45785,15 +45785,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -45807,15 +45807,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -45829,15 +45829,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -45851,15 +45851,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:blor - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:blor AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -45873,15 +45873,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -45895,15 +45895,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45917,15 +45917,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -45939,67 +45939,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-celc,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-INTERACTS_WITH-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -46013,15 +46013,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46035,41 +46035,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-fngs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -46083,15 +46083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -46105,67 +46105,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm,ncbigene-STIMULATES-cell,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' tisu,umls-PRODUCES-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -46179,15 +46179,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -46201,15 +46201,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -46223,15 +46223,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46245,15 +46245,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -46267,15 +46267,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -46289,15 +46289,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46311,15 +46311,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -46333,15 +46333,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -46355,15 +46355,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46377,67 +46377,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PART_OF-plnt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:plnt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:plnt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -46451,15 +46451,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46473,15 +46473,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -46495,15 +46495,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -46517,15 +46517,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46539,15 +46539,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46561,15 +46561,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -46583,67 +46583,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PREDISPOSES-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -46657,15 +46657,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -46679,15 +46679,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46701,15 +46701,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -46723,15 +46723,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46745,15 +46745,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -46767,15 +46767,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46789,15 +46789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46811,15 +46811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46833,15 +46833,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -46855,15 +46855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -46877,15 +46877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46899,15 +46899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -46921,15 +46921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -46943,15 +46943,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46965,15 +46965,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46987,15 +46987,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47009,15 +47009,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47031,15 +47031,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47053,15 +47053,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47075,41 +47075,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-phsf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -47123,15 +47123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -47145,15 +47145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -47167,15 +47167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -47189,15 +47189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47211,41 +47211,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47259,15 +47259,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -47281,15 +47281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -47303,15 +47303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47325,15 +47325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47347,15 +47347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -47369,41 +47369,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-DISRUPTS-neop,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -47417,15 +47417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -47439,15 +47439,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -47461,15 +47461,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47483,15 +47483,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -47505,15 +47505,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -47527,15 +47527,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -47549,15 +47549,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47571,67 +47571,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -47645,15 +47645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -47667,15 +47667,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -47689,41 +47689,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -47737,15 +47737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -47759,15 +47759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47781,41 +47781,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' medd-DIAGNOSES-virs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -47829,15 +47829,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:medd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -47851,15 +47851,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -47873,15 +47873,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -47895,15 +47895,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47917,15 +47917,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -47939,15 +47939,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -47961,15 +47961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -47983,15 +47983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48005,15 +48005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48027,15 +48027,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -48049,15 +48049,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48071,41 +48071,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-PRODUCES-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -48119,15 +48119,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -48141,15 +48141,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48163,15 +48163,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48185,15 +48185,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48207,15 +48207,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -48229,15 +48229,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -48251,67 +48251,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48325,15 +48325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48347,15 +48347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48369,15 +48369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48391,15 +48391,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -48413,15 +48413,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -48435,15 +48435,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48457,15 +48457,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -48479,15 +48479,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -48501,15 +48501,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48523,15 +48523,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:comd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48545,15 +48545,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48567,15 +48567,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -48589,15 +48589,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -48611,15 +48611,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:topp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -48633,15 +48633,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48655,15 +48655,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -48677,15 +48677,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -48699,15 +48699,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48721,15 +48721,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -48743,15 +48743,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -48765,15 +48765,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -48787,15 +48787,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48809,15 +48809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -48831,15 +48831,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -48853,15 +48853,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -48875,15 +48875,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48897,15 +48897,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -48919,15 +48919,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48941,41 +48941,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48989,15 +48989,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49011,41 +49011,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -49059,41 +49059,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-PART_OF-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -49107,15 +49107,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -49129,15 +49129,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -49151,15 +49151,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -49173,15 +49173,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49195,15 +49195,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -49217,15 +49217,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -49239,15 +49239,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -49261,67 +49261,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-neop,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inpo-COEXISTS_WITH-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -49335,15 +49335,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -49357,93 +49357,93 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-biof: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-CAUSES-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49457,15 +49457,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49479,15 +49479,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49501,15 +49501,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -49523,67 +49523,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,umls-STIMULATES-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,ncbigene-PREVENTS-inpo,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -49597,15 +49597,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -49619,15 +49619,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -49641,15 +49641,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -49663,67 +49663,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-PRODUCES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -49737,15 +49737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49759,15 +49759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49781,15 +49781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49803,15 +49803,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -49825,15 +49825,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:fngs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -49847,41 +49847,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49895,67 +49895,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-TREATS-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -49969,15 +49969,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -49991,15 +49991,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -50013,15 +50013,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -50035,15 +50035,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50057,15 +50057,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -50079,15 +50079,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50101,15 +50101,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50123,15 +50123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50145,15 +50145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50167,15 +50167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50189,15 +50189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -50211,15 +50211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -50233,15 +50233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:diap + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -50255,15 +50255,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50277,15 +50277,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -50299,15 +50299,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50321,15 +50321,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50343,15 +50343,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50365,15 +50365,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50387,15 +50387,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50409,15 +50409,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -50431,15 +50431,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50453,15 +50453,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -50475,15 +50475,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -50497,15 +50497,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -50519,15 +50519,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -50541,15 +50541,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -50563,15 +50563,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -50585,15 +50585,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50607,15 +50607,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50629,15 +50629,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50651,15 +50651,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50673,15 +50673,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50695,15 +50695,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50717,15 +50717,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50739,41 +50739,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-ASSOCIATED_WITH-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50787,15 +50787,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -50809,15 +50809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -50831,41 +50831,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba,umls-INTERACTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50879,15 +50879,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50901,15 +50901,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50923,41 +50923,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50971,41 +50971,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' antb-COEXISTS_WITH-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51019,15 +51019,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51041,41 +51041,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -51089,15 +51089,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -51111,15 +51111,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -51133,15 +51133,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -51155,15 +51155,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51177,15 +51177,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -51199,119 +51199,119 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -51325,15 +51325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51347,15 +51347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -51369,41 +51369,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-emst: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -51417,15 +51417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -51439,15 +51439,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -51461,15 +51461,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -51483,15 +51483,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -51505,15 +51505,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -51527,15 +51527,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -51549,15 +51549,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51571,67 +51571,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -51645,41 +51645,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb,umls-INTERACTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51693,15 +51693,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51715,15 +51715,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -51737,15 +51737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -51759,15 +51759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -51781,15 +51781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -51803,15 +51803,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51825,15 +51825,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51847,15 +51847,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -51869,15 +51869,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -51891,15 +51891,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -51913,41 +51913,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51961,15 +51961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:comd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -51983,15 +51983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52005,15 +52005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52027,15 +52027,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -52049,15 +52049,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52071,15 +52071,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52093,41 +52093,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREDISPOSES-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -52141,41 +52141,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-PART_OF-fngs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -52189,15 +52189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -52211,15 +52211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -52233,15 +52233,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -52255,41 +52255,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-virs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -52303,15 +52303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -52325,15 +52325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -52347,15 +52347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:food AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -52369,15 +52369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -52391,15 +52391,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -52413,15 +52413,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -52435,15 +52435,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -52457,145 +52457,145 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-STIMULATES-moft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' eico-STIMULATES-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm,umls-COEXISTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52609,15 +52609,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52631,15 +52631,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -52653,15 +52653,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -52675,41 +52675,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -52723,15 +52723,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -52745,15 +52745,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52767,15 +52767,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -52789,15 +52789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -52811,15 +52811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -52833,15 +52833,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52855,15 +52855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52877,15 +52877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -52899,41 +52899,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-ortf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -52947,15 +52947,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -52969,15 +52969,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -52991,15 +52991,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -53013,15 +53013,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -53035,41 +53035,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53083,15 +53083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53105,15 +53105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53127,15 +53127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53149,15 +53149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53171,15 +53171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -53193,15 +53193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -53215,15 +53215,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53237,15 +53237,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53259,15 +53259,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53281,15 +53281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53303,15 +53303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53325,15 +53325,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53347,41 +53347,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -53395,67 +53395,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' elii-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-INTERACTS_WITH-bodm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53469,15 +53469,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -53491,15 +53491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -53513,15 +53513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -53535,15 +53535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -53557,67 +53557,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-STIMULATES-orch,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' inch-INTERACTS_WITH-bodm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53631,15 +53631,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -53653,15 +53653,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -53675,15 +53675,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:orgf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -53697,15 +53697,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53719,15 +53719,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lbtr - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lbtr AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -53741,15 +53741,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lbtr + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -53763,41 +53763,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celf,umls-AFFECTS-bacs,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -53811,15 +53811,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -53833,15 +53833,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53855,15 +53855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53877,15 +53877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53899,15 +53899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53921,15 +53921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53943,93 +53943,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRODUCES-enzy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -54043,15 +54043,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -54065,41 +54065,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-COEXISTS_WITH-horm,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54113,15 +54113,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -54135,15 +54135,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -54157,15 +54157,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54179,67 +54179,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PRODUCES-nnon,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54253,15 +54253,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54275,15 +54275,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -54297,15 +54297,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -54319,15 +54319,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54341,15 +54341,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54363,15 +54363,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -54385,15 +54385,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54407,15 +54407,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54429,15 +54429,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -54451,15 +54451,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -54473,15 +54473,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -54495,41 +54495,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-PREDISPOSES-inpo,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -54543,15 +54543,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -54565,15 +54565,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54587,15 +54587,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -54609,15 +54609,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -54631,15 +54631,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -54653,15 +54653,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -54675,41 +54675,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AFFECTS-bpoc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54723,41 +54723,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -54771,15 +54771,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54793,15 +54793,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54815,67 +54815,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-ASSOCIATED_WITH-sosy,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -54889,15 +54889,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -54911,15 +54911,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -54933,15 +54933,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -54955,15 +54955,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -54977,15 +54977,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -54999,67 +54999,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-fndg,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp,ncbigene-PART_OF-blor,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -55073,15 +55073,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55095,15 +55095,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -55117,15 +55117,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -55139,15 +55139,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55161,15 +55161,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -55183,15 +55183,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55205,15 +55205,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55227,15 +55227,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55249,15 +55249,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55271,15 +55271,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55293,41 +55293,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-PART_OF-emst,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -55341,15 +55341,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -55363,15 +55363,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55385,15 +55385,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -55407,15 +55407,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55429,15 +55429,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55451,15 +55451,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55473,15 +55473,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -55495,15 +55495,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55517,15 +55517,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55539,15 +55539,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55561,15 +55561,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55583,67 +55583,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PRODUCES-orch,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55657,15 +55657,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55679,15 +55679,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -55701,15 +55701,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55723,15 +55723,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55745,15 +55745,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lbtr - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lbtr AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -55767,15 +55767,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -55789,15 +55789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55811,15 +55811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55833,15 +55833,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -55855,15 +55855,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55877,15 +55877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -55899,15 +55899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -55921,15 +55921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -55943,41 +55943,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55991,15 +55991,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -56013,15 +56013,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56035,15 +56035,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -56057,15 +56057,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56079,15 +56079,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -56101,15 +56101,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -56123,15 +56123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -56145,15 +56145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -56167,15 +56167,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -56189,15 +56189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -56211,15 +56211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56233,15 +56233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -56255,15 +56255,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -56277,15 +56277,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56299,41 +56299,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-strd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56347,15 +56347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -56369,15 +56369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -56391,15 +56391,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -56413,15 +56413,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -56435,15 +56435,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -56457,15 +56457,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56479,93 +56479,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-ortf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -56579,15 +56579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56601,15 +56601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -56623,15 +56623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -56645,15 +56645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56667,41 +56667,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-moft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -56715,15 +56715,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -56737,15 +56737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56759,15 +56759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56781,15 +56781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -56803,41 +56803,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AFFECTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56851,15 +56851,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56873,15 +56873,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56895,15 +56895,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -56917,41 +56917,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INTERACTS_WITH-irda,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -56965,15 +56965,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -56987,15 +56987,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57009,15 +57009,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57031,15 +57031,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57053,15 +57053,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57075,15 +57075,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -57097,15 +57097,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -57119,15 +57119,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -57141,15 +57141,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57163,67 +57163,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -57237,15 +57237,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -57259,15 +57259,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -57281,15 +57281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57303,15 +57303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57325,15 +57325,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57347,15 +57347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57369,15 +57369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57391,15 +57391,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:eehu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:eehu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -57413,15 +57413,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -57435,15 +57435,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -57457,15 +57457,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -57479,15 +57479,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57501,15 +57501,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57523,15 +57523,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57545,41 +57545,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-MANIFESTATION_OF-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -57593,15 +57593,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57615,15 +57615,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -57637,15 +57637,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -57659,15 +57659,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57681,15 +57681,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:ortf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -57703,15 +57703,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -57725,15 +57725,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57747,41 +57747,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm-PREDISPOSES-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57795,15 +57795,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57817,15 +57817,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -57839,15 +57839,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -57861,15 +57861,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -57883,15 +57883,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -57905,67 +57905,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-AUGMENTS-patf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-DISRUPTS-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57979,15 +57979,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58001,15 +58001,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58023,15 +58023,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -58045,67 +58045,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58119,41 +58119,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-biof: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -58167,15 +58167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -58189,15 +58189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58211,15 +58211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -58233,15 +58233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -58255,15 +58255,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58277,15 +58277,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58299,15 +58299,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58321,15 +58321,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58343,15 +58343,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -58365,15 +58365,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58387,41 +58387,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58435,15 +58435,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58457,15 +58457,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -58479,15 +58479,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lbtr + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -58501,41 +58501,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58549,15 +58549,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58571,67 +58571,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu,ncbigene-INHIBITS-ortf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' elii-AFFECTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58645,41 +58645,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INTERACTS_WITH-irda-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58693,67 +58693,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58767,15 +58767,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -58789,15 +58789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -58811,15 +58811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -58833,15 +58833,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -58855,15 +58855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -58877,41 +58877,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-LOCATION_OF-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -58925,15 +58925,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -58947,67 +58947,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-INHIBITS-orch,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -59021,15 +59021,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59043,15 +59043,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59065,15 +59065,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59087,15 +59087,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59109,15 +59109,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -59131,15 +59131,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -59153,15 +59153,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -59175,15 +59175,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -59197,41 +59197,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' rcpt,umls-INTERACTS_WITH-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -59245,15 +59245,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -59267,15 +59267,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -59289,15 +59289,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59311,15 +59311,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:plnt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:plnt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -59333,15 +59333,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -59355,41 +59355,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -59403,15 +59403,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -59425,15 +59425,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -59447,15 +59447,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -59469,15 +59469,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -59491,15 +59491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -59513,15 +59513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59535,15 +59535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59557,15 +59557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:neop AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -59579,15 +59579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -59601,15 +59601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:virs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -59623,15 +59623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -59645,15 +59645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -59667,15 +59667,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59689,15 +59689,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -59711,15 +59711,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -59733,15 +59733,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59755,93 +59755,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:topp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dora-STIMULATES-topp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:dora AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Activity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59855,15 +59855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -59877,15 +59877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -59899,15 +59899,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -59921,15 +59921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -59943,67 +59943,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dora-PREDISPOSES-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -60017,15 +60017,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -60039,15 +60039,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60061,15 +60061,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -60083,15 +60083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -60105,15 +60105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -60127,15 +60127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -60149,41 +60149,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-DIAGNOSES-cgab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -60197,15 +60197,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:sosy AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -60219,15 +60219,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60241,15 +60241,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -60263,15 +60263,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -60285,15 +60285,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -60307,15 +60307,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -60329,15 +60329,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -60351,15 +60351,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -60373,15 +60373,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -60395,15 +60395,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60417,15 +60417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60439,15 +60439,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -60461,15 +60461,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60483,15 +60483,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60505,15 +60505,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60527,15 +60527,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60549,15 +60549,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60571,15 +60571,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -60593,15 +60593,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -60615,15 +60615,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:phsu AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -60637,15 +60637,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -60659,15 +60659,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -60681,15 +60681,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -60703,15 +60703,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -60725,15 +60725,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -60747,15 +60747,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:lbtr - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:lbtr AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -60769,15 +60769,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -60791,41 +60791,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -60839,15 +60839,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -60861,15 +60861,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -60883,15 +60883,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -60905,15 +60905,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60927,15 +60927,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -60949,15 +60949,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -60971,41 +60971,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61019,15 +61019,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61041,15 +61041,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61063,15 +61063,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -61085,15 +61085,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -61107,15 +61107,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -61129,15 +61129,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -61151,15 +61151,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61173,67 +61173,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft,ncbigene-PREVENTS-dsyn,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -61247,15 +61247,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -61269,15 +61269,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61291,15 +61291,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61313,41 +61313,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61361,15 +61361,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -61383,15 +61383,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -61405,15 +61405,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -61427,15 +61427,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -61449,15 +61449,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -61471,15 +61471,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -61493,15 +61493,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -61515,15 +61515,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -61537,15 +61537,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -61559,15 +61559,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -61581,15 +61581,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -61603,67 +61603,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -61677,15 +61677,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -61699,41 +61699,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt,umls-COEXISTS_WITH-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -61747,15 +61747,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -61769,15 +61769,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61791,15 +61791,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -61813,15 +61813,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61835,15 +61835,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -61857,15 +61857,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -61879,15 +61879,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -61901,15 +61901,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61923,15 +61923,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -61945,15 +61945,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61967,15 +61967,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -61989,15 +61989,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -62011,15 +62011,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -62033,15 +62033,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -62055,15 +62055,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -62077,15 +62077,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -62099,15 +62099,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -62121,41 +62121,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -62169,15 +62169,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62191,15 +62191,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62213,15 +62213,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -62235,15 +62235,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:food + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -62257,41 +62257,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62305,15 +62305,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -62327,15 +62327,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -62349,15 +62349,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62371,15 +62371,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -62393,15 +62393,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -62415,15 +62415,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62437,15 +62437,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -62459,15 +62459,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62481,15 +62481,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -62503,15 +62503,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -62525,15 +62525,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62547,15 +62547,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62569,15 +62569,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62591,15 +62591,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -62613,15 +62613,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -62635,15 +62635,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62657,15 +62657,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -62679,15 +62679,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62701,15 +62701,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62723,15 +62723,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -62745,15 +62745,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -62767,15 +62767,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62789,15 +62789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62811,15 +62811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:comd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62833,15 +62833,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62855,15 +62855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -62877,15 +62877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62899,15 +62899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -62921,15 +62921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -62943,15 +62943,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62965,15 +62965,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62987,15 +62987,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -63009,15 +63009,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -63031,15 +63031,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -63053,15 +63053,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63075,67 +63075,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63149,15 +63149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63171,15 +63171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -63193,15 +63193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -63215,67 +63215,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -63289,15 +63289,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -63311,15 +63311,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -63333,15 +63333,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -63355,15 +63355,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63377,41 +63377,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -63425,15 +63425,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -63447,15 +63447,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -63469,15 +63469,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -63491,15 +63491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -63513,15 +63513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -63535,15 +63535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -63557,15 +63557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -63579,15 +63579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -63601,15 +63601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63623,15 +63623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63645,15 +63645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63667,15 +63667,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -63689,15 +63689,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -63711,15 +63711,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63733,15 +63733,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -63755,15 +63755,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -63777,15 +63777,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63799,15 +63799,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63821,15 +63821,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -63843,15 +63843,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63865,15 +63865,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63887,15 +63887,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63909,15 +63909,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63931,15 +63931,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63953,15 +63953,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -63975,15 +63975,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -63997,15 +63997,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -64019,41 +64019,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-AFFECTS-mobd,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -64067,15 +64067,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -64089,15 +64089,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64111,15 +64111,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64133,67 +64133,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-ASSOCIATED_WITH-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64207,15 +64207,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:vita AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64229,15 +64229,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -64251,15 +64251,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -64273,41 +64273,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64321,15 +64321,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64343,15 +64343,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -64365,15 +64365,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -64387,67 +64387,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -64461,15 +64461,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64483,15 +64483,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -64505,119 +64505,119 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' anst-PART_OF-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -64631,15 +64631,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -64653,15 +64653,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64675,93 +64675,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-anst: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-anst-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' biof-PROCESS_OF-aggp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -64775,15 +64775,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:biof AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -64797,15 +64797,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64819,119 +64819,119 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-antb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' opco,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -64945,15 +64945,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -64967,41 +64967,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-biof: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -65015,15 +65015,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -65037,15 +65037,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -65059,15 +65059,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -65081,15 +65081,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -65103,15 +65103,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65125,15 +65125,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -65147,15 +65147,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -65169,15 +65169,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -65191,15 +65191,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -65213,15 +65213,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -65235,15 +65235,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65257,15 +65257,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -65279,15 +65279,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -65301,15 +65301,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65323,15 +65323,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65345,15 +65345,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -65367,15 +65367,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -65389,15 +65389,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65411,15 +65411,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -65433,15 +65433,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65455,15 +65455,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65477,15 +65477,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65499,15 +65499,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65521,15 +65521,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -65543,15 +65543,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -65565,67 +65565,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-PART_OF-neop,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -65639,15 +65639,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -65661,15 +65661,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65683,41 +65683,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-DISRUPTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65731,15 +65731,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65753,15 +65753,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65775,15 +65775,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65797,15 +65797,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65819,15 +65819,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -65841,15 +65841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65863,41 +65863,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -65911,15 +65911,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65933,15 +65933,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65955,15 +65955,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -65977,15 +65977,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -65999,15 +65999,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66021,15 +66021,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -66043,41 +66043,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' hops,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66091,15 +66091,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -66113,15 +66113,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -66135,15 +66135,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66157,15 +66157,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66179,15 +66179,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66201,15 +66201,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -66223,15 +66223,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -66245,15 +66245,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66267,41 +66267,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -66315,15 +66315,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -66337,15 +66337,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:diap AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -66359,15 +66359,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -66381,41 +66381,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -66429,15 +66429,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -66451,15 +66451,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -66473,15 +66473,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66495,41 +66495,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb,umls-INTERACTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66543,41 +66543,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' patf,umls-ASSOCIATED_WITH-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -66591,15 +66591,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66613,15 +66613,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66635,15 +66635,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66657,15 +66657,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -66679,15 +66679,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:eehu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:eehu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -66701,15 +66701,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -66723,15 +66723,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -66745,15 +66745,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -66767,15 +66767,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -66789,15 +66789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -66811,15 +66811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -66833,15 +66833,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66855,15 +66855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -66877,15 +66877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -66899,15 +66899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -66921,15 +66921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -66943,41 +66943,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66991,15 +66991,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67013,15 +67013,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67035,41 +67035,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AFFECTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67083,15 +67083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67105,15 +67105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67127,15 +67127,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -67149,15 +67149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67171,15 +67171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67193,15 +67193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -67215,41 +67215,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-phsf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -67263,15 +67263,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -67285,15 +67285,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -67307,15 +67307,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67329,15 +67329,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67351,15 +67351,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67373,15 +67373,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67395,15 +67395,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67417,15 +67417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67439,15 +67439,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67461,67 +67461,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-STIMULATES-elii,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt,umls-COEXISTS_WITH-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67535,15 +67535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -67557,15 +67557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67579,15 +67579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67601,15 +67601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67623,15 +67623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67645,41 +67645,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AFFECTS-ortf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67693,15 +67693,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67715,67 +67715,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AUGMENTS-inpo-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-DISRUPTS-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67789,15 +67789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67811,15 +67811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67833,15 +67833,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67855,15 +67855,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67877,15 +67877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67899,15 +67899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67921,15 +67921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67943,15 +67943,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67965,41 +67965,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68013,15 +68013,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -68035,41 +68035,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-ASSOCIATED_WITH-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68083,15 +68083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -68105,15 +68105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68127,15 +68127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68149,15 +68149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68171,15 +68171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68193,15 +68193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68215,15 +68215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -68237,15 +68237,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -68259,15 +68259,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -68281,15 +68281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -68303,15 +68303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -68325,15 +68325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68347,15 +68347,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68369,15 +68369,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -68391,15 +68391,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -68413,93 +68413,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' strd-AUGMENTS-bpoc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-COEXISTS_WITH-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68513,15 +68513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -68535,15 +68535,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -68557,15 +68557,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -68579,15 +68579,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -68601,15 +68601,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -68623,15 +68623,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -68645,15 +68645,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68667,41 +68667,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -68715,15 +68715,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -68737,15 +68737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -68759,15 +68759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68781,15 +68781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -68803,15 +68803,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -68825,15 +68825,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68847,41 +68847,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68895,15 +68895,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68917,15 +68917,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68939,15 +68939,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:comd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68961,15 +68961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68983,15 +68983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69005,15 +69005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69027,15 +69027,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69049,15 +69049,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -69071,15 +69071,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -69093,15 +69093,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -69115,93 +69115,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft,umls-INHIBITS-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-ASSOCIATED_WITH-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -69215,15 +69215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -69237,15 +69237,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69259,15 +69259,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69281,15 +69281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -69303,15 +69303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -69325,15 +69325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -69347,15 +69347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -69369,15 +69369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69391,41 +69391,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69439,15 +69439,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -69461,15 +69461,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -69483,41 +69483,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-moft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -69531,15 +69531,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -69553,15 +69553,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69575,15 +69575,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -69597,15 +69597,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69619,15 +69619,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -69641,15 +69641,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -69663,15 +69663,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -69685,15 +69685,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -69707,15 +69707,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -69729,15 +69729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69751,15 +69751,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -69773,15 +69773,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69795,15 +69795,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -69817,15 +69817,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -69839,15 +69839,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69861,93 +69861,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69961,15 +69961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69983,15 +69983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70005,15 +70005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70027,41 +70027,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70075,15 +70075,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70097,15 +70097,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -70119,15 +70119,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70141,67 +70141,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-DISRUPTS-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -70215,15 +70215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -70237,15 +70237,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -70259,15 +70259,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -70281,15 +70281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -70303,15 +70303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -70325,15 +70325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70347,15 +70347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70369,15 +70369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70391,119 +70391,119 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-acab-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PREDISPOSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70517,41 +70517,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRECEDES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70565,15 +70565,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70587,15 +70587,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70609,15 +70609,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70631,15 +70631,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70653,15 +70653,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70675,15 +70675,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70697,41 +70697,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-COEXISTS_WITH-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -70745,15 +70745,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -70767,15 +70767,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70789,15 +70789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70811,15 +70811,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70833,67 +70833,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-enzy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-COEXISTS_WITH-carb,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70907,15 +70907,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70929,15 +70929,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70951,15 +70951,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70973,15 +70973,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -70995,15 +70995,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71017,15 +71017,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -71039,15 +71039,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71061,15 +71061,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71083,145 +71083,145 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71235,15 +71235,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71257,15 +71257,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71279,15 +71279,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -71301,15 +71301,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71323,41 +71323,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PREVENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71371,15 +71371,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71393,15 +71393,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71415,15 +71415,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -71437,15 +71437,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -71459,15 +71459,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -71481,15 +71481,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71503,41 +71503,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-inch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71551,15 +71551,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71573,15 +71573,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71595,15 +71595,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:irda - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:irda AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -71617,15 +71617,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71639,15 +71639,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71661,15 +71661,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71683,15 +71683,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71705,15 +71705,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71727,15 +71727,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71749,15 +71749,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -71771,15 +71771,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:orga - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:orga + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: OrganismAttribute @@ -71793,15 +71793,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71815,15 +71815,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71837,15 +71837,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -71859,15 +71859,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71881,15 +71881,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71903,15 +71903,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71925,41 +71925,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-DISRUPTS-tisu,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -71973,15 +71973,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71995,15 +71995,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72017,15 +72017,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -72039,15 +72039,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72061,15 +72061,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72083,15 +72083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72105,15 +72105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72127,15 +72127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72149,15 +72149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72171,41 +72171,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-irda-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72219,15 +72219,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72241,93 +72241,93 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-imft,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp,ncbigene-INHIBITS-antb,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' neop-MANIFESTATION_OF-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72341,93 +72341,93 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu,ncbigene-INHIBITS-fndg,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu,ncbigene-INHIBITS-fndg,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm,ncbigene-COEXISTS_WITH-elii,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72441,15 +72441,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72463,119 +72463,119 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INHIBITS-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AFFECTS-virs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72589,15 +72589,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72611,15 +72611,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72633,41 +72633,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-topp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -72681,15 +72681,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -72703,15 +72703,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -72725,15 +72725,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -72747,41 +72747,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-MANIFESTATION_OF-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -72795,15 +72795,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -72817,15 +72817,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -72839,41 +72839,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-PRODUCES-nsba,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72887,15 +72887,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72909,15 +72909,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72931,15 +72931,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -72953,15 +72953,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72975,41 +72975,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-ASSOCIATED_WITH-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73023,93 +73023,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-COEXISTS_WITH-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73123,15 +73123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73145,15 +73145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73167,15 +73167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -73189,15 +73189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73211,15 +73211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -73233,41 +73233,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' opco-COEXISTS_WITH-inch-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73281,15 +73281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -73303,15 +73303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -73325,15 +73325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73347,15 +73347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73369,15 +73369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -73391,15 +73391,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73413,15 +73413,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73435,41 +73435,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-INTERACTS_WITH-nusq,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -73483,15 +73483,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -73505,15 +73505,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -73527,15 +73527,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -73549,15 +73549,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -73571,15 +73571,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73593,15 +73593,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -73615,15 +73615,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73637,15 +73637,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -73659,41 +73659,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-COEXISTS_WITH-nsba,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73707,15 +73707,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73729,15 +73729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73751,15 +73751,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73773,15 +73773,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73795,15 +73795,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:medd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:medd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -73817,15 +73817,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -73839,15 +73839,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -73861,15 +73861,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73883,15 +73883,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:enzy AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -73905,67 +73905,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INHIBITS-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-ASSOCIATED_WITH-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73979,15 +73979,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -74001,15 +74001,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -74023,15 +74023,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74045,15 +74045,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -74067,15 +74067,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -74089,15 +74089,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -74111,15 +74111,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -74133,15 +74133,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -74155,15 +74155,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -74177,15 +74177,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -74199,15 +74199,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74221,67 +74221,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74295,15 +74295,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74317,15 +74317,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74339,15 +74339,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -74361,15 +74361,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74383,15 +74383,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74405,15 +74405,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -74427,15 +74427,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -74449,15 +74449,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74471,15 +74471,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74493,15 +74493,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74515,15 +74515,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74537,41 +74537,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-CONVERTS_TO-bacs,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -74585,15 +74585,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -74607,15 +74607,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74629,15 +74629,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -74651,15 +74651,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -74673,15 +74673,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74695,15 +74695,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -74717,15 +74717,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74739,15 +74739,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74761,41 +74761,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRODUCES-enzy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -74809,15 +74809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -74831,15 +74831,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74853,67 +74853,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-DISRUPTS-celc,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -74927,15 +74927,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -74949,15 +74949,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74971,15 +74971,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74993,15 +74993,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75015,41 +75015,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' opco-PREDISPOSES-inpo-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:opco AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75063,15 +75063,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75085,15 +75085,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75107,15 +75107,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75129,15 +75129,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75151,15 +75151,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75173,15 +75173,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75195,15 +75195,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75217,15 +75217,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75239,15 +75239,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -75261,15 +75261,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -75283,15 +75283,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75305,15 +75305,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -75327,15 +75327,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -75349,41 +75349,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -75397,15 +75397,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -75419,15 +75419,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75441,15 +75441,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75463,41 +75463,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75511,15 +75511,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -75533,15 +75533,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -75555,15 +75555,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75577,41 +75577,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' acab-LOCATION_OF-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -75625,15 +75625,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75647,15 +75647,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75669,15 +75669,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75691,15 +75691,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75713,15 +75713,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75735,67 +75735,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INTERACTS_WITH-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75809,67 +75809,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AFFECTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75883,15 +75883,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75905,15 +75905,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75927,15 +75927,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -75949,15 +75949,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75971,15 +75971,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -75993,15 +75993,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -76015,15 +76015,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -76037,15 +76037,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76059,15 +76059,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76081,15 +76081,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76103,15 +76103,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -76125,15 +76125,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -76147,15 +76147,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -76169,15 +76169,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -76191,15 +76191,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:blor - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:blor AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -76213,15 +76213,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -76235,41 +76235,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PRODUCES-carb,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76283,67 +76283,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' anab-COEXISTS_WITH-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76357,15 +76357,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76379,15 +76379,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76401,15 +76401,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76423,15 +76423,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -76445,15 +76445,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76467,15 +76467,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -76489,41 +76489,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,umls-PRODUCES-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -76537,15 +76537,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76559,15 +76559,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -76581,41 +76581,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-nsba: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76629,15 +76629,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76651,15 +76651,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76673,15 +76673,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -76695,15 +76695,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -76717,41 +76717,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' hops-DISRUPTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76765,15 +76765,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76787,15 +76787,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76809,15 +76809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76831,41 +76831,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-COEXISTS_WITH-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -76879,15 +76879,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -76901,15 +76901,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -76923,15 +76923,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -76945,15 +76945,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76967,15 +76967,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76989,15 +76989,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77011,15 +77011,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -77033,15 +77033,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -77055,15 +77055,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77077,15 +77077,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77099,41 +77099,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-opco: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77147,67 +77147,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-TREATS-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -77221,67 +77221,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' anab-PART_OF-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -77295,15 +77295,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77317,15 +77317,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77339,15 +77339,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77361,15 +77361,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -77383,15 +77383,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77405,15 +77405,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -77427,67 +77427,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-ortf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-CAUSES-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77501,15 +77501,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -77523,15 +77523,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77545,15 +77545,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77567,15 +77567,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -77589,15 +77589,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -77611,15 +77611,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77633,15 +77633,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -77655,15 +77655,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -77677,15 +77677,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -77699,41 +77699,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-phsu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77747,15 +77747,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -77769,15 +77769,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77791,67 +77791,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77865,15 +77865,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -77887,15 +77887,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -77909,15 +77909,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -77931,15 +77931,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -77953,15 +77953,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -77975,15 +77975,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77997,15 +77997,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78019,15 +78019,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78041,15 +78041,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78063,41 +78063,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-CAUSES-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78111,15 +78111,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78133,15 +78133,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78155,15 +78155,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78177,15 +78177,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78199,15 +78199,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78221,15 +78221,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78243,15 +78243,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78265,15 +78265,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -78287,15 +78287,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78309,15 +78309,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78331,15 +78331,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78353,15 +78353,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78375,67 +78375,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AFFECTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78449,67 +78449,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-bpoc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -78523,15 +78523,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -78545,41 +78545,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-MANIFESTATION_OF-ortf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -78593,15 +78593,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -78615,41 +78615,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-CONVERTS_TO-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -78663,15 +78663,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -78685,15 +78685,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78707,15 +78707,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -78729,15 +78729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78751,15 +78751,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78773,15 +78773,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -78795,15 +78795,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78817,15 +78817,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78839,15 +78839,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78861,15 +78861,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78883,15 +78883,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78905,15 +78905,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78927,15 +78927,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -78949,15 +78949,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78971,15 +78971,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -78993,15 +78993,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -79015,15 +79015,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79037,15 +79037,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -79059,15 +79059,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -79081,15 +79081,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79103,15 +79103,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79125,15 +79125,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79147,15 +79147,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -79169,41 +79169,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-fngs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -79217,15 +79217,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -79239,15 +79239,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79261,15 +79261,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79283,15 +79283,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -79305,15 +79305,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -79327,15 +79327,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:cgab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79349,15 +79349,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -79371,41 +79371,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79419,15 +79419,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79441,15 +79441,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -79463,15 +79463,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -79485,15 +79485,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79507,15 +79507,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79529,15 +79529,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -79551,15 +79551,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79573,15 +79573,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79595,15 +79595,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -79617,15 +79617,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -79639,15 +79639,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79661,15 +79661,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79683,41 +79683,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79731,15 +79731,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79753,15 +79753,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -79775,15 +79775,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -79797,67 +79797,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PRODUCES-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79871,15 +79871,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79893,15 +79893,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -79915,15 +79915,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -79937,15 +79937,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -79959,15 +79959,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -79981,15 +79981,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80003,15 +80003,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80025,15 +80025,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -80047,15 +80047,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -80069,15 +80069,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -80091,15 +80091,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -80113,15 +80113,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80135,15 +80135,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80157,15 +80157,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -80179,15 +80179,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80201,15 +80201,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -80223,15 +80223,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80245,15 +80245,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80267,15 +80267,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -80289,15 +80289,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -80311,15 +80311,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -80333,15 +80333,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80355,15 +80355,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -80377,15 +80377,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80399,15 +80399,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80421,15 +80421,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -80443,41 +80443,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-LOCATION_OF-irda: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -80491,15 +80491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -80513,41 +80513,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-phsu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80561,15 +80561,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80583,15 +80583,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -80605,15 +80605,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80627,41 +80627,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-inch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80675,15 +80675,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80697,67 +80697,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' acab-MANIFESTATION_OF-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80771,41 +80771,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' vita-ASSOCIATED_WITH-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80819,15 +80819,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -80841,15 +80841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -80863,15 +80863,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80885,15 +80885,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80907,15 +80907,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -80929,15 +80929,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -80951,93 +80951,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -81051,15 +81051,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -81073,15 +81073,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81095,15 +81095,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81117,15 +81117,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81139,15 +81139,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81161,15 +81161,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -81183,15 +81183,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -81205,93 +81205,93 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-AUGMENTS-cell,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-MANIFESTATION_OF-comd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81305,15 +81305,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81327,15 +81327,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81349,15 +81349,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81371,15 +81371,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81393,15 +81393,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -81415,15 +81415,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:emod - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:emod AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -81437,15 +81437,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81459,15 +81459,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81481,15 +81481,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -81503,15 +81503,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -81525,15 +81525,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81547,15 +81547,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -81569,15 +81569,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -81591,15 +81591,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -81613,15 +81613,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81635,15 +81635,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:inpo AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -81657,15 +81657,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81679,15 +81679,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81701,67 +81701,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-DISRUPTS-sosy,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -81775,15 +81775,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -81797,15 +81797,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81819,15 +81819,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -81841,15 +81841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81863,15 +81863,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81885,15 +81885,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81907,15 +81907,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81929,15 +81929,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81951,67 +81951,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:opco AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-AUGMENTS-emst,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -82025,15 +82025,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -82047,15 +82047,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82069,15 +82069,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82091,93 +82091,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-enzy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -82191,15 +82191,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82213,15 +82213,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -82235,15 +82235,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82257,67 +82257,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82331,15 +82331,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82353,15 +82353,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82375,15 +82375,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -82397,15 +82397,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -82419,15 +82419,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82441,15 +82441,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82463,15 +82463,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82485,15 +82485,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -82507,15 +82507,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82529,41 +82529,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-aggp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -82577,15 +82577,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -82599,15 +82599,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82621,15 +82621,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82643,15 +82643,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:emod - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:emod AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -82665,15 +82665,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82687,15 +82687,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82709,41 +82709,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82757,15 +82757,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -82779,15 +82779,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -82801,15 +82801,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -82823,15 +82823,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82845,15 +82845,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82867,15 +82867,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82889,15 +82889,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82911,15 +82911,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82933,15 +82933,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -82955,15 +82955,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -82977,41 +82977,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83025,15 +83025,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83047,15 +83047,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -83069,15 +83069,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83091,15 +83091,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83113,15 +83113,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83135,15 +83135,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83157,15 +83157,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83179,41 +83179,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-PREVENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83227,41 +83227,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83275,15 +83275,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -83297,15 +83297,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -83319,15 +83319,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83341,15 +83341,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -83363,15 +83363,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:anab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83385,15 +83385,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -83407,15 +83407,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -83429,15 +83429,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -83451,15 +83451,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -83473,15 +83473,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83495,15 +83495,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83517,15 +83517,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83539,15 +83539,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83561,15 +83561,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83583,15 +83583,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83605,15 +83605,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83627,15 +83627,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -83649,15 +83649,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -83671,15 +83671,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83693,15 +83693,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83715,15 +83715,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -83737,15 +83737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83759,15 +83759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -83781,15 +83781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -83803,15 +83803,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -83825,15 +83825,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -83847,15 +83847,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -83869,15 +83869,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -83891,15 +83891,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -83913,41 +83913,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' emst-PART_OF-fngs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -83961,15 +83961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83983,15 +83983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84005,15 +84005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84027,15 +84027,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -84049,15 +84049,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84071,41 +84071,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRECEDES-comd-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84119,119 +84119,119 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-INHIBITS-hops,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-INTERACTS_WITH-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84245,15 +84245,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -84267,15 +84267,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84289,67 +84289,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nnon,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb-CAUSES-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84363,15 +84363,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -84385,15 +84385,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -84407,15 +84407,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84429,15 +84429,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84451,15 +84451,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84473,15 +84473,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -84495,15 +84495,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -84517,15 +84517,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -84539,15 +84539,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -84561,15 +84561,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -84583,41 +84583,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84631,41 +84631,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84679,15 +84679,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84701,15 +84701,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84723,15 +84723,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -84745,15 +84745,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -84767,15 +84767,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84789,15 +84789,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84811,15 +84811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84833,41 +84833,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84881,67 +84881,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-emst: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -84955,41 +84955,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nnon AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85003,15 +85003,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85025,15 +85025,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -85047,15 +85047,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -85069,15 +85069,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -85091,15 +85091,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -85113,15 +85113,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -85135,15 +85135,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -85157,15 +85157,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -85179,15 +85179,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -85201,15 +85201,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85223,15 +85223,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85245,15 +85245,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -85267,15 +85267,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -85289,15 +85289,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85311,15 +85311,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85333,15 +85333,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85355,15 +85355,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85377,15 +85377,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:neop AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85399,15 +85399,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -85421,41 +85421,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-PREDISPOSES-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85469,15 +85469,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -85491,15 +85491,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -85513,15 +85513,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -85535,15 +85535,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -85557,41 +85557,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-DISRUPTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85605,15 +85605,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -85627,15 +85627,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -85649,15 +85649,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85671,15 +85671,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85693,15 +85693,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85715,15 +85715,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85737,41 +85737,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -85785,15 +85785,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -85807,41 +85807,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85855,15 +85855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85877,15 +85877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -85899,15 +85899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -85921,15 +85921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85943,41 +85943,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:opco AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85991,15 +85991,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -86013,15 +86013,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -86035,15 +86035,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86057,41 +86057,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-COEXISTS_WITH-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86105,15 +86105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -86127,15 +86127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -86149,15 +86149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86171,67 +86171,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-ASSOCIATED_WITH-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86245,15 +86245,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86267,15 +86267,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86289,15 +86289,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86311,15 +86311,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86333,67 +86333,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AUGMENTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PREVENTS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -86407,15 +86407,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -86429,15 +86429,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86451,15 +86451,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:acab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86473,15 +86473,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bodm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -86495,15 +86495,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -86517,15 +86517,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -86539,15 +86539,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86561,15 +86561,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -86583,15 +86583,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86605,41 +86605,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INTERACTS_WITH-irda-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86653,15 +86653,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86675,15 +86675,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -86697,15 +86697,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -86719,15 +86719,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86741,15 +86741,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86763,67 +86763,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-sosy,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' sosy-MANIFESTATION_OF-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -86837,15 +86837,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -86859,15 +86859,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86881,15 +86881,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86903,15 +86903,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86925,41 +86925,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-PART_OF-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -86973,15 +86973,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -86995,15 +86995,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -87017,67 +87017,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-AUGMENTS-moft,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm,ncbigene-DISRUPTS-mobd,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87091,41 +87091,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRODUCES-nsba: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87139,15 +87139,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -87161,15 +87161,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -87183,67 +87183,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' anab-COMPLICATES-anab-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87257,15 +87257,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87279,15 +87279,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87301,67 +87301,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-emst: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' anab-MANIFESTATION_OF-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:anab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87375,15 +87375,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87397,15 +87397,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -87419,15 +87419,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -87441,15 +87441,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87463,15 +87463,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -87485,15 +87485,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -87507,15 +87507,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -87529,15 +87529,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87551,15 +87551,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87573,15 +87573,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87595,15 +87595,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87617,15 +87617,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87639,15 +87639,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87661,15 +87661,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87683,41 +87683,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-CAUSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87731,15 +87731,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87753,15 +87753,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87775,67 +87775,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm,ncbigene-INTERACTS_WITH-aapp,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -87849,15 +87849,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87871,15 +87871,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87893,15 +87893,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87915,15 +87915,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87937,15 +87937,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87959,15 +87959,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -87981,15 +87981,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -88003,15 +88003,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88025,15 +88025,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88047,15 +88047,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88069,67 +88069,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-DISRUPTS-inpo,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -88143,15 +88143,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -88165,15 +88165,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88187,15 +88187,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -88209,15 +88209,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -88231,15 +88231,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -88253,15 +88253,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88275,67 +88275,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-same_as-aapp,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -88349,15 +88349,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -88371,15 +88371,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -88393,15 +88393,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88415,15 +88415,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -88437,15 +88437,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -88459,15 +88459,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -88481,15 +88481,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88503,15 +88503,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -88525,15 +88525,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -88547,15 +88547,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -88569,15 +88569,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -88591,15 +88591,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -88613,41 +88613,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' acab-AFFECTS-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88661,15 +88661,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88683,15 +88683,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88705,15 +88705,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -88727,15 +88727,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -88749,15 +88749,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88771,15 +88771,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88793,41 +88793,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INTERACTS_WITH-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88841,15 +88841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:topp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -88863,15 +88863,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:diap + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -88885,41 +88885,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp-PRODUCES-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -88933,15 +88933,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -88955,15 +88955,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88977,15 +88977,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88999,15 +88999,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89021,15 +89021,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89043,41 +89043,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PART_OF-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89091,15 +89091,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -89113,15 +89113,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -89135,15 +89135,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89157,15 +89157,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89179,15 +89179,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89201,41 +89201,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' rcpt-ASSOCIATED_WITH-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -89249,15 +89249,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -89271,15 +89271,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -89293,15 +89293,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89315,15 +89315,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -89337,145 +89337,145 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nusq,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt,umls-INHIBITS-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu,ncbigene-INHIBITS-gngm,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' elii-DISRUPTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89489,15 +89489,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -89511,15 +89511,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -89533,15 +89533,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -89555,15 +89555,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89577,15 +89577,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -89599,15 +89599,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -89621,41 +89621,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -89669,15 +89669,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -89691,67 +89691,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs,ncbigene-STIMULATES-gngm,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celf-AFFECTS-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -89765,15 +89765,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -89787,15 +89787,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89809,15 +89809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89831,15 +89831,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -89853,15 +89853,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89875,15 +89875,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -89897,15 +89897,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -89919,67 +89919,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-opco: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:opco AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89993,15 +89993,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90015,15 +90015,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -90037,15 +90037,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -90059,15 +90059,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90081,41 +90081,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90129,15 +90129,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -90151,41 +90151,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -90199,15 +90199,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -90221,15 +90221,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90243,41 +90243,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-TREATS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90291,15 +90291,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90313,15 +90313,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -90335,15 +90335,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90357,15 +90357,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -90379,15 +90379,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -90401,15 +90401,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90423,15 +90423,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90445,15 +90445,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -90467,15 +90467,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -90489,15 +90489,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90511,41 +90511,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-CAUSES-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90559,15 +90559,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -90581,15 +90581,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -90603,15 +90603,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -90625,41 +90625,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-ASSOCIATED_WITH-cgab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90673,15 +90673,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90695,15 +90695,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90717,15 +90717,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90739,15 +90739,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90761,41 +90761,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' ortf-AFFECTS-virs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -90809,15 +90809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90831,15 +90831,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -90853,15 +90853,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -90875,41 +90875,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' comd-PRODUCES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90923,15 +90923,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90945,15 +90945,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90967,15 +90967,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -90989,15 +90989,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91011,15 +91011,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91033,41 +91033,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lbtr-MANIFESTATION_OF-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -91081,15 +91081,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -91103,67 +91103,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orgf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-INTERACTS_WITH-phsu,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -91177,15 +91177,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -91199,15 +91199,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -91221,15 +91221,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91243,15 +91243,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91265,15 +91265,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91287,15 +91287,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91309,15 +91309,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -91331,15 +91331,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -91353,15 +91353,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -91375,15 +91375,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91397,15 +91397,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -91419,15 +91419,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -91441,15 +91441,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91463,15 +91463,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -91485,15 +91485,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91507,15 +91507,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -91529,15 +91529,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -91551,15 +91551,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -91573,15 +91573,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -91595,15 +91595,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -91617,15 +91617,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91639,15 +91639,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91661,15 +91661,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -91683,15 +91683,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -91705,15 +91705,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -91727,15 +91727,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -91749,15 +91749,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91771,15 +91771,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -91793,41 +91793,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-CONVERTS_TO-imft,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -91841,15 +91841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -91863,67 +91863,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' hops-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91937,67 +91937,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' irda,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PRECEDES-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -92011,15 +92011,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -92033,15 +92033,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -92055,15 +92055,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -92077,15 +92077,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -92099,15 +92099,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92121,15 +92121,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92143,15 +92143,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -92165,15 +92165,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -92187,15 +92187,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -92209,15 +92209,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92231,41 +92231,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-COEXISTS_WITH-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -92279,15 +92279,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92301,15 +92301,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92323,15 +92323,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92345,15 +92345,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -92367,15 +92367,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -92389,15 +92389,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92411,15 +92411,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92433,15 +92433,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -92455,15 +92455,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -92477,15 +92477,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -92499,15 +92499,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -92521,15 +92521,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -92543,67 +92543,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-biof,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-PREDISPOSES-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92617,15 +92617,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92639,15 +92639,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -92661,93 +92661,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-AUGMENTS-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-enzy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-CONVERTS_TO-nsba: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92761,67 +92761,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-INTERACTS_WITH-opco,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92835,15 +92835,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92857,67 +92857,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-CAUSES-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -92931,67 +92931,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ADMINISTERED_TO-aggp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93005,15 +93005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93027,67 +93027,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp,umls-STIMULATES-horm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:horm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' topp-COMPLICATES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93101,15 +93101,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -93123,15 +93123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93145,15 +93145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -93167,15 +93167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93189,15 +93189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -93211,15 +93211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -93233,15 +93233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93255,15 +93255,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -93277,41 +93277,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-PREVENTS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -93325,15 +93325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -93347,15 +93347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -93369,15 +93369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93391,15 +93391,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -93413,15 +93413,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -93435,15 +93435,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -93457,15 +93457,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -93479,15 +93479,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -93501,15 +93501,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93523,15 +93523,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -93545,15 +93545,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -93567,15 +93567,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -93589,15 +93589,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -93611,15 +93611,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93633,15 +93633,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -93655,15 +93655,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -93677,15 +93677,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -93699,15 +93699,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93721,15 +93721,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -93743,15 +93743,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -93765,15 +93765,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93787,15 +93787,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -93809,15 +93809,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -93831,93 +93831,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-STIMULATES-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-STIMULATES-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' comd-AFFECTS-virs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93931,15 +93931,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93953,15 +93953,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93975,15 +93975,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93997,15 +93997,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -94019,15 +94019,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94041,15 +94041,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -94063,41 +94063,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-comd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -94111,15 +94111,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94133,41 +94133,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -94181,15 +94181,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -94203,15 +94203,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94225,15 +94225,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94247,41 +94247,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-PRECEDES-topp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -94295,15 +94295,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94317,41 +94317,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-nnon: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94365,15 +94365,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -94387,93 +94387,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-STIMULATES-bacs,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' virs,umls-LOCATION_OF-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -94487,15 +94487,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94509,15 +94509,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -94531,15 +94531,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -94553,15 +94553,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94575,15 +94575,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -94597,15 +94597,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -94619,15 +94619,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94641,15 +94641,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94663,15 +94663,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:drdd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:drdd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -94685,15 +94685,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94707,15 +94707,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:diap AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -94729,15 +94729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -94751,15 +94751,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -94773,15 +94773,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -94795,15 +94795,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94817,15 +94817,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -94839,15 +94839,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -94861,15 +94861,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -94883,15 +94883,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94905,15 +94905,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -94927,15 +94927,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -94949,15 +94949,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -94971,15 +94971,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -94993,15 +94993,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95015,41 +95015,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -95063,15 +95063,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -95085,67 +95085,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu,ncbigene-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-COEXISTS_WITH-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95159,15 +95159,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -95181,15 +95181,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95203,15 +95203,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -95225,15 +95225,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95247,15 +95247,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95269,15 +95269,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -95291,15 +95291,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95313,15 +95313,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95335,15 +95335,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -95357,67 +95357,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-rcpt,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' opco-PREDISPOSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:opco AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95431,15 +95431,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:opco AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95453,15 +95453,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -95475,15 +95475,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -95497,15 +95497,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -95519,15 +95519,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95541,15 +95541,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -95563,15 +95563,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95585,93 +95585,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' opco-STIMULATES-hops-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:opco AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -95685,41 +95685,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bact-PRODUCES-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95733,15 +95733,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95755,15 +95755,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -95777,15 +95777,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95799,15 +95799,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -95821,41 +95821,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-INTERACTS_WITH-bacs,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -95869,15 +95869,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -95891,15 +95891,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -95913,15 +95913,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -95935,93 +95935,93 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INHIBITS-imft,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs,ncbigene-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' medd-CAUSES-cgab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96035,15 +96035,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96057,15 +96057,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96079,15 +96079,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96101,41 +96101,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' opco,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96149,15 +96149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96171,15 +96171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -96193,15 +96193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -96215,15 +96215,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96237,41 +96237,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-AFFECTS-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96285,15 +96285,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -96307,15 +96307,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -96329,15 +96329,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96351,15 +96351,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -96373,15 +96373,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -96395,41 +96395,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-bact: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -96443,15 +96443,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -96465,15 +96465,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96487,15 +96487,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -96509,15 +96509,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -96531,67 +96531,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-PRECEDES-topp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96605,15 +96605,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96627,15 +96627,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -96649,41 +96649,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' enzy,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -96697,15 +96697,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96719,15 +96719,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -96741,15 +96741,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96763,41 +96763,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PRODUCES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -96811,15 +96811,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -96833,15 +96833,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96855,15 +96855,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96877,15 +96877,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -96899,15 +96899,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96921,15 +96921,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -96943,15 +96943,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -96965,15 +96965,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96987,15 +96987,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -97009,15 +97009,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -97031,15 +97031,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97053,15 +97053,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -97075,41 +97075,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orgf,umls-PRODUCES-horm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -97123,15 +97123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -97145,15 +97145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97167,15 +97167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -97189,15 +97189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -97211,15 +97211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -97233,15 +97233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:fndg + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -97255,41 +97255,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-moft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -97303,15 +97303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -97325,15 +97325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -97347,41 +97347,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu,ncbigene-ASSOCIATED_WITH-dsyn,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -97395,15 +97395,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:diap AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -97417,15 +97417,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:topp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -97439,15 +97439,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -97461,15 +97461,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -97483,15 +97483,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97505,15 +97505,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -97527,41 +97527,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu,ncbigene-CAUSES-celf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -97575,15 +97575,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97597,15 +97597,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97619,15 +97619,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97641,15 +97641,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97663,15 +97663,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97685,15 +97685,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97707,15 +97707,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97729,15 +97729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97751,41 +97751,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-phsu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97799,15 +97799,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -97821,15 +97821,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97843,15 +97843,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -97865,15 +97865,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -97887,15 +97887,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -97909,15 +97909,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -97931,15 +97931,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97953,15 +97953,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97975,15 +97975,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -97997,15 +97997,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -98019,15 +98019,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -98041,15 +98041,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98063,15 +98063,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -98085,15 +98085,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -98107,15 +98107,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -98129,15 +98129,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98151,15 +98151,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98173,15 +98173,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -98195,15 +98195,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98217,15 +98217,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98239,15 +98239,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -98261,15 +98261,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -98283,15 +98283,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -98305,15 +98305,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -98327,15 +98327,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -98349,15 +98349,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98371,15 +98371,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -98393,15 +98393,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -98415,15 +98415,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -98437,67 +98437,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:irda AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-irda-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-COEXISTS_WITH-bacs,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -98511,93 +98511,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-CAUSES-anab,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -98611,41 +98611,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nsba,ncbigene-DISRUPTS-ortf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -98659,15 +98659,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:vita AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98681,15 +98681,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98703,15 +98703,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98725,15 +98725,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -98747,15 +98747,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -98769,15 +98769,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98791,15 +98791,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98813,15 +98813,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -98835,15 +98835,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -98857,15 +98857,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -98879,15 +98879,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -98901,15 +98901,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -98923,15 +98923,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98945,15 +98945,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98967,15 +98967,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:mobd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -98989,41 +98989,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99037,41 +99037,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-PREVENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99085,41 +99085,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp,ncbigene-AFFECTS-anab,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99133,15 +99133,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -99155,15 +99155,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -99177,15 +99177,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -99199,15 +99199,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99221,15 +99221,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99243,15 +99243,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:opco AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99265,15 +99265,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -99287,15 +99287,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -99309,15 +99309,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -99331,15 +99331,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99353,15 +99353,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99375,67 +99375,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-AUGMENTS-biof,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-PRECEDES-topp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99449,15 +99449,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99471,15 +99471,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99493,15 +99493,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -99515,15 +99515,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -99537,15 +99537,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99559,41 +99559,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' hops-AFFECTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99607,15 +99607,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99629,93 +99629,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-STIMULATES-nusq,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-nusq,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' strd-AFFECTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99729,15 +99729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -99751,15 +99751,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -99773,67 +99773,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-enzy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -99847,41 +99847,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-PART_OF-fngs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99895,15 +99895,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -99917,15 +99917,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -99939,15 +99939,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99961,15 +99961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99983,15 +99983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -100005,15 +100005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100027,41 +100027,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-PRODUCES-hops,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100075,15 +100075,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100097,41 +100097,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:enzy AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm,ncbigene-INTERACTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -100145,15 +100145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100167,41 +100167,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-AFFECTS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -100215,15 +100215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -100237,15 +100237,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100259,15 +100259,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -100281,15 +100281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100303,15 +100303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100325,15 +100325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100347,15 +100347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nnon AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100369,15 +100369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100391,15 +100391,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -100413,15 +100413,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -100435,15 +100435,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -100457,15 +100457,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -100479,15 +100479,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -100501,15 +100501,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -100523,15 +100523,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100545,15 +100545,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -100567,15 +100567,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -100589,15 +100589,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100611,15 +100611,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100633,15 +100633,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100655,67 +100655,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INHIBITS-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-INTERACTS_WITH-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100729,15 +100729,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:medd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:medd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -100751,15 +100751,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100773,41 +100773,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-LOCATION_OF-bodm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bodm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -100821,15 +100821,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -100843,15 +100843,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100865,15 +100865,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -100887,15 +100887,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -100909,15 +100909,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -100931,15 +100931,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100953,15 +100953,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100975,41 +100975,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-PART_OF-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101023,15 +101023,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -101045,67 +101045,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-comd-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREVENTS-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -101119,15 +101119,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101141,15 +101141,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -101163,15 +101163,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -101185,15 +101185,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -101207,15 +101207,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -101229,145 +101229,145 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm,ncbigene-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' carb-INHIBITS-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-antb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101381,41 +101381,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft-AFFECTS-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -101429,15 +101429,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -101451,15 +101451,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -101473,15 +101473,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -101495,15 +101495,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101517,93 +101517,93 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-medd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:medd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:medd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -101617,15 +101617,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -101639,15 +101639,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -101661,15 +101661,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -101683,15 +101683,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101705,15 +101705,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101727,41 +101727,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs,umls-CONVERTS_TO-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -101775,15 +101775,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101797,15 +101797,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101819,15 +101819,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -101841,15 +101841,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -101863,15 +101863,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101885,41 +101885,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-PRODUCES-bdsu,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -101933,67 +101933,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-CONVERTS_TO-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102007,41 +102007,41 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PRECEDES-topp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -102055,15 +102055,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -102077,41 +102077,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-PART_OF-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102125,15 +102125,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102147,15 +102147,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -102169,41 +102169,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PREVENTS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -102217,15 +102217,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102239,15 +102239,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102261,41 +102261,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lbtr-MANIFESTATION_OF-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102309,15 +102309,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -102331,15 +102331,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102353,15 +102353,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -102375,15 +102375,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -102397,15 +102397,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -102419,41 +102419,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AFFECTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102467,15 +102467,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -102489,15 +102489,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -102511,15 +102511,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -102533,15 +102533,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102555,15 +102555,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102577,15 +102577,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102599,15 +102599,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102621,15 +102621,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102643,15 +102643,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -102665,15 +102665,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -102687,15 +102687,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -102709,15 +102709,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -102731,67 +102731,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft,umls-INHIBITS-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' elii-AFFECTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102805,15 +102805,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:drdd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:drdd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -102827,15 +102827,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102849,15 +102849,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:mobd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102871,15 +102871,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102893,15 +102893,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -102915,15 +102915,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -102937,15 +102937,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102959,15 +102959,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102981,15 +102981,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103003,15 +103003,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103025,15 +103025,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -103047,15 +103047,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -103069,15 +103069,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:vita - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:vita AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103091,15 +103091,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -103113,15 +103113,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103135,15 +103135,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -103157,41 +103157,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm,ncbigene-AFFECTS-orgf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -103205,41 +103205,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -103253,15 +103253,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103275,15 +103275,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -103297,15 +103297,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -103319,15 +103319,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103341,15 +103341,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103363,15 +103363,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -103385,15 +103385,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -103407,41 +103407,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-DISRUPTS-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103455,15 +103455,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -103477,15 +103477,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103499,15 +103499,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -103521,15 +103521,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103543,15 +103543,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -103565,15 +103565,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -103587,15 +103587,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103609,15 +103609,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -103631,15 +103631,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:vita - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:vita AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103653,67 +103653,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nnon-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nnon AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103727,15 +103727,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -103749,15 +103749,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -103771,15 +103771,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -103793,15 +103793,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103815,15 +103815,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103837,15 +103837,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:vita AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103859,15 +103859,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103881,15 +103881,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -103903,15 +103903,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -103925,15 +103925,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -103947,15 +103947,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -103969,15 +103969,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -103991,15 +103991,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104013,15 +104013,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -104035,15 +104035,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -104057,15 +104057,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -104079,15 +104079,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104101,15 +104101,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104123,15 +104123,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -104145,15 +104145,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104167,15 +104167,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -104189,15 +104189,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -104211,15 +104211,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -104233,15 +104233,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104255,15 +104255,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104277,15 +104277,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -104299,15 +104299,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -104321,15 +104321,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104343,15 +104343,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104365,67 +104365,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INHIBITS-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104439,67 +104439,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-COEXISTS_WITH-cgab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -104513,15 +104513,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104535,67 +104535,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INHIBITS-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-irda: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -104609,15 +104609,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -104631,41 +104631,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PREVENTS-neop,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -104679,15 +104679,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -104701,15 +104701,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -104723,15 +104723,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -104745,41 +104745,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bact-INTERACTS_WITH-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -104793,15 +104793,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -104815,15 +104815,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104837,15 +104837,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104859,15 +104859,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104881,15 +104881,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -104903,15 +104903,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -104925,15 +104925,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -104947,15 +104947,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104969,15 +104969,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104991,41 +104991,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:opco AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105039,15 +105039,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105061,15 +105061,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -105083,15 +105083,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -105105,15 +105105,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -105127,15 +105127,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105149,15 +105149,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -105171,15 +105171,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -105193,15 +105193,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105215,15 +105215,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105237,15 +105237,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105259,15 +105259,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -105281,15 +105281,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105303,15 +105303,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -105325,15 +105325,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105347,15 +105347,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105369,15 +105369,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105391,15 +105391,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105413,67 +105413,67 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INHIBITS-nusq,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs,ncbigene-INTERACTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -105487,15 +105487,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -105509,15 +105509,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -105531,15 +105531,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -105553,67 +105553,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-INHIBITS-eico,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -105627,15 +105627,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -105649,15 +105649,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -105671,15 +105671,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -105693,15 +105693,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105715,15 +105715,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:orgf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -105737,15 +105737,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -105759,15 +105759,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105781,15 +105781,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105803,15 +105803,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105825,15 +105825,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105847,41 +105847,41 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-CAUSES-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -105895,15 +105895,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -105917,15 +105917,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105939,15 +105939,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -105961,15 +105961,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105983,15 +105983,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -106005,15 +106005,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106027,15 +106027,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106049,15 +106049,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106071,15 +106071,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106093,15 +106093,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106115,15 +106115,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -106137,15 +106137,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -106159,15 +106159,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -106181,15 +106181,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106203,15 +106203,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -106225,15 +106225,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -106247,15 +106247,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -106269,15 +106269,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -106291,15 +106291,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -106313,15 +106313,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -106335,15 +106335,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106357,15 +106357,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106379,15 +106379,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -106401,67 +106401,67 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INHIBITS-inch-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm,ncbigene-TREATS-anab,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -106475,15 +106475,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:vita - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:vita AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106497,15 +106497,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -106519,15 +106519,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106541,15 +106541,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106563,15 +106563,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106585,15 +106585,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106607,15 +106607,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106629,15 +106629,15 @@ x-bte-kgs-operations: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -106651,15 +106651,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -106673,15 +106673,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -106695,15 +106695,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -106717,15 +106717,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -106739,15 +106739,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -106761,15 +106761,15 @@ x-bte-kgs-operations: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule diff --git a/semmeddb/smartapi.yaml b/semmeddb/smartapi.yaml index 40fb7347..c3337a7e 100644 --- a/semmeddb/smartapi.yaml +++ b/semmeddb/smartapi.yaml @@ -5392,15 +5392,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5414,15 +5414,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -5436,15 +5436,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -5458,15 +5458,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -5480,15 +5480,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -5502,15 +5502,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -5524,15 +5524,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5546,15 +5546,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -5568,15 +5568,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5590,15 +5590,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5612,15 +5612,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -5634,15 +5634,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -5656,15 +5656,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -5678,15 +5678,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -5700,15 +5700,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -5722,15 +5722,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -5744,15 +5744,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -5766,15 +5766,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -5788,15 +5788,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -5810,15 +5810,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -5832,15 +5832,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -5854,15 +5854,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -5876,15 +5876,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -5898,15 +5898,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -5920,15 +5920,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -5942,15 +5942,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -5964,15 +5964,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -5986,15 +5986,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -6008,15 +6008,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6030,15 +6030,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -6052,15 +6052,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:celf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -6074,15 +6074,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -6096,15 +6096,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6118,15 +6118,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6140,15 +6140,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:medd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:medd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -6162,15 +6162,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -6184,15 +6184,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6206,15 +6206,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6228,15 +6228,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6250,15 +6250,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -6272,15 +6272,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -6294,15 +6294,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6316,15 +6316,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6338,15 +6338,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6360,15 +6360,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6382,67 +6382,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6456,15 +6456,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -6478,15 +6478,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6500,15 +6500,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -6522,15 +6522,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6544,15 +6544,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -6566,15 +6566,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -6588,15 +6588,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6610,15 +6610,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -6632,15 +6632,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -6654,15 +6654,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -6676,15 +6676,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6698,15 +6698,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -6720,15 +6720,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -6742,15 +6742,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -6764,15 +6764,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6786,15 +6786,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -6808,15 +6808,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -6830,15 +6830,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6852,15 +6852,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6874,15 +6874,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -6896,15 +6896,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -6918,15 +6918,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -6940,15 +6940,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -6962,15 +6962,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -6984,15 +6984,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -7006,15 +7006,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -7028,15 +7028,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -7050,15 +7050,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -7072,15 +7072,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7094,15 +7094,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7116,15 +7116,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7138,15 +7138,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -7160,15 +7160,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -7182,15 +7182,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -7204,15 +7204,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7226,15 +7226,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -7248,15 +7248,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -7270,15 +7270,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -7292,15 +7292,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -7314,15 +7314,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bpoc AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -7336,15 +7336,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -7358,15 +7358,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:topp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -7380,15 +7380,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -7402,15 +7402,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7424,15 +7424,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -7446,15 +7446,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -7468,15 +7468,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -7490,15 +7490,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7512,15 +7512,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -7534,15 +7534,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7556,15 +7556,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -7578,15 +7578,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -7600,15 +7600,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -7622,15 +7622,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7644,67 +7644,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -7718,15 +7718,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -7740,15 +7740,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7762,15 +7762,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -7784,15 +7784,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -7806,15 +7806,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -7828,15 +7828,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -7850,15 +7850,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -7872,15 +7872,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -7894,15 +7894,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -7916,15 +7916,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -7938,15 +7938,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -7960,15 +7960,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -7982,15 +7982,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -8004,15 +8004,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -8026,15 +8026,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8048,67 +8048,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8122,15 +8122,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -8144,15 +8144,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8166,15 +8166,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -8188,67 +8188,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' medd-USES-phsu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8262,15 +8262,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -8284,15 +8284,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -8306,15 +8306,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -8328,15 +8328,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8350,15 +8350,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8372,15 +8372,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8394,15 +8394,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -8416,15 +8416,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8438,15 +8438,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -8460,15 +8460,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -8482,15 +8482,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -8504,15 +8504,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:bpoc AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -8526,15 +8526,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -8548,15 +8548,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -8570,15 +8570,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8592,15 +8592,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -8614,15 +8614,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -8636,15 +8636,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -8658,15 +8658,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -8680,15 +8680,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -8702,15 +8702,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -8724,15 +8724,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -8746,15 +8746,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -8768,15 +8768,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:medd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:medd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -8790,15 +8790,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -8812,15 +8812,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8834,15 +8834,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -8856,15 +8856,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -8878,15 +8878,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -8900,15 +8900,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -8922,67 +8922,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -8996,15 +8996,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orgf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -9018,15 +9018,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -9040,15 +9040,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -9062,15 +9062,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9084,15 +9084,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -9106,15 +9106,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -9128,15 +9128,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -9150,15 +9150,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -9172,15 +9172,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9194,15 +9194,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9216,15 +9216,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -9238,15 +9238,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -9260,15 +9260,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9282,15 +9282,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9304,15 +9304,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -9326,15 +9326,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9348,15 +9348,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9370,15 +9370,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -9392,15 +9392,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -9414,15 +9414,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9436,15 +9436,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orgf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -9458,15 +9458,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -9480,67 +9480,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PROCESS_OF-bact: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -9554,15 +9554,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9576,15 +9576,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -9598,15 +9598,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -9620,15 +9620,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9642,15 +9642,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -9664,15 +9664,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -9686,15 +9686,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -9708,15 +9708,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -9730,15 +9730,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -9752,15 +9752,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -9774,15 +9774,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -9796,15 +9796,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -9818,15 +9818,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -9840,15 +9840,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:diap AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -9862,15 +9862,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -9884,15 +9884,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -9906,67 +9906,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-blor: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:blor - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:blor AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -9980,15 +9980,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -10002,15 +10002,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -10024,15 +10024,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -10046,15 +10046,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10068,15 +10068,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -10090,15 +10090,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -10112,15 +10112,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -10134,15 +10134,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -10156,15 +10156,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10178,15 +10178,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -10200,15 +10200,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10222,15 +10222,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -10244,15 +10244,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bsoj AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -10266,15 +10266,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -10288,15 +10288,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -10310,15 +10310,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -10332,15 +10332,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -10354,15 +10354,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10376,15 +10376,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -10398,15 +10398,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -10420,15 +10420,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -10442,15 +10442,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10464,15 +10464,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -10486,15 +10486,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -10508,15 +10508,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -10530,15 +10530,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10552,15 +10552,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:tisu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -10574,15 +10574,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -10596,15 +10596,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -10618,15 +10618,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -10640,15 +10640,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:ortf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -10662,15 +10662,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -10684,15 +10684,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -10706,15 +10706,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10728,15 +10728,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -10750,15 +10750,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -10772,15 +10772,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -10794,15 +10794,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10816,15 +10816,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -10838,67 +10838,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' virs-CAUSES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -10912,15 +10912,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:virs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -10934,15 +10934,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -10956,15 +10956,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -10978,15 +10978,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -11000,41 +11000,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-CAUSES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11048,15 +11048,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -11070,15 +11070,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11092,15 +11092,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -11114,15 +11114,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -11136,15 +11136,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -11158,15 +11158,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11180,15 +11180,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -11202,15 +11202,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11224,67 +11224,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-gngm,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-COEXISTS_WITH-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orgf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -11298,15 +11298,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orgf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -11320,15 +11320,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -11342,15 +11342,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -11364,15 +11364,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -11386,15 +11386,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -11408,15 +11408,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -11430,15 +11430,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -11452,15 +11452,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -11474,15 +11474,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11496,15 +11496,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:irda AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -11518,15 +11518,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -11540,15 +11540,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -11562,15 +11562,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -11584,15 +11584,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -11606,15 +11606,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -11628,15 +11628,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11650,41 +11650,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-TREATS-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -11698,15 +11698,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11720,15 +11720,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11742,15 +11742,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11764,67 +11764,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -11838,15 +11838,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -11860,15 +11860,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -11882,15 +11882,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -11904,15 +11904,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11926,15 +11926,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -11948,15 +11948,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -11970,15 +11970,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orga - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orga + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: OrganismAttribute @@ -11992,15 +11992,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12014,15 +12014,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -12036,15 +12036,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12058,15 +12058,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12080,15 +12080,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12102,15 +12102,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -12124,15 +12124,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -12146,15 +12146,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -12168,15 +12168,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -12190,15 +12190,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12212,15 +12212,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -12234,15 +12234,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12256,15 +12256,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12278,15 +12278,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12300,15 +12300,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12322,41 +12322,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12370,15 +12370,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -12392,15 +12392,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12414,15 +12414,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -12436,15 +12436,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12458,15 +12458,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -12480,15 +12480,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -12502,15 +12502,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -12524,15 +12524,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -12546,15 +12546,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12568,15 +12568,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -12590,15 +12590,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -12612,15 +12612,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -12634,15 +12634,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -12656,15 +12656,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12678,15 +12678,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -12700,15 +12700,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -12722,15 +12722,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -12744,15 +12744,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -12766,15 +12766,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -12788,15 +12788,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12810,15 +12810,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -12832,15 +12832,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -12854,15 +12854,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -12876,15 +12876,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -12898,15 +12898,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -12920,15 +12920,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -12942,15 +12942,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:blor - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:blor AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -12964,15 +12964,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -12986,15 +12986,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -13008,15 +13008,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -13030,15 +13030,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -13052,15 +13052,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -13074,15 +13074,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13096,15 +13096,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -13118,15 +13118,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -13140,15 +13140,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13162,15 +13162,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13184,15 +13184,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13206,15 +13206,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -13228,15 +13228,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bdsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -13250,15 +13250,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -13272,15 +13272,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -13294,15 +13294,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -13316,15 +13316,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13338,15 +13338,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13360,15 +13360,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13382,15 +13382,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13404,15 +13404,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13426,15 +13426,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13448,15 +13448,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -13470,15 +13470,15 @@ components: inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13492,15 +13492,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -13514,15 +13514,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -13536,15 +13536,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -13558,15 +13558,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:plnt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:plnt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -13580,15 +13580,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13602,15 +13602,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -13624,15 +13624,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -13646,15 +13646,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -13668,15 +13668,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13690,15 +13690,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -13712,15 +13712,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -13734,15 +13734,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13756,15 +13756,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13778,15 +13778,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13800,15 +13800,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:plnt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:plnt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -13822,15 +13822,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -13844,93 +13844,93 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREDISPOSES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -13944,15 +13944,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -13966,15 +13966,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -13988,15 +13988,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -14010,15 +14010,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -14032,15 +14032,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -14054,15 +14054,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -14076,15 +14076,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -14098,15 +14098,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -14120,15 +14120,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -14142,15 +14142,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -14164,41 +14164,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -14212,67 +14212,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-cell,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-AFFECTS-phsf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -14286,15 +14286,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14308,93 +14308,93 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch,umls-INHIBITS-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' orch,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -14408,15 +14408,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14430,15 +14430,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14452,15 +14452,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -14474,15 +14474,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -14496,15 +14496,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -14518,15 +14518,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14540,15 +14540,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:blor - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:blor AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -14562,15 +14562,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -14584,15 +14584,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -14606,15 +14606,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -14628,15 +14628,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14650,15 +14650,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -14672,15 +14672,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14694,15 +14694,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -14716,15 +14716,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -14738,15 +14738,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14760,15 +14760,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -14782,15 +14782,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -14804,67 +14804,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-moft,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' plnt-LOCATION_OF-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -14878,15 +14878,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -14900,15 +14900,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -14922,15 +14922,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -14944,15 +14944,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -14966,15 +14966,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:celf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -14988,15 +14988,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:celf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -15010,67 +15010,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,ncbigene-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-PART_OF-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -15084,15 +15084,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -15106,15 +15106,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -15128,67 +15128,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-PROCESS_OF-aggp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:mobd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15202,15 +15202,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -15224,15 +15224,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15246,15 +15246,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -15268,15 +15268,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -15290,15 +15290,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15312,15 +15312,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -15334,15 +15334,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15356,15 +15356,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15378,15 +15378,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -15400,15 +15400,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -15422,15 +15422,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15444,15 +15444,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -15466,15 +15466,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -15488,15 +15488,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -15510,15 +15510,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -15532,15 +15532,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -15554,15 +15554,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -15576,67 +15576,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,umls-INHIBITS-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PART_OF-bpoc,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -15650,15 +15650,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -15672,15 +15672,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15694,15 +15694,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -15716,15 +15716,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:plnt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:plnt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -15738,15 +15738,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -15760,15 +15760,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -15782,15 +15782,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -15804,15 +15804,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -15826,15 +15826,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -15848,67 +15848,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -15922,15 +15922,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -15944,15 +15944,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -15966,15 +15966,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:biof AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -15988,15 +15988,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -16010,41 +16010,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celf-CAUSES-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -16058,15 +16058,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -16080,15 +16080,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16102,15 +16102,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -16124,15 +16124,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -16146,15 +16146,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -16168,15 +16168,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -16190,15 +16190,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -16212,15 +16212,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -16234,15 +16234,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -16256,15 +16256,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -16278,15 +16278,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -16300,15 +16300,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16322,15 +16322,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -16344,15 +16344,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -16366,15 +16366,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -16388,15 +16388,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -16410,15 +16410,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16432,15 +16432,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -16454,15 +16454,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -16476,15 +16476,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -16498,15 +16498,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -16520,15 +16520,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -16542,15 +16542,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -16564,15 +16564,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:neop AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -16586,67 +16586,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-bpoc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -16660,15 +16660,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16682,67 +16682,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INHIBITS-aapp,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AFFECTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16756,67 +16756,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -16830,15 +16830,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -16852,15 +16852,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -16874,15 +16874,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -16896,15 +16896,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16918,15 +16918,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -16940,15 +16940,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -16962,15 +16962,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -16984,15 +16984,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:ortf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -17006,15 +17006,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17028,15 +17028,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17050,119 +17050,119 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-INHIBITS-gngm,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AUGMENTS-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17176,15 +17176,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -17198,15 +17198,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -17220,15 +17220,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -17242,15 +17242,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17264,15 +17264,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17286,15 +17286,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -17308,15 +17308,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -17330,15 +17330,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -17352,15 +17352,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -17374,15 +17374,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -17396,15 +17396,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:fngs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -17418,15 +17418,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -17440,15 +17440,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -17462,15 +17462,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -17484,15 +17484,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -17506,15 +17506,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -17528,119 +17528,119 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-PART_OF-virs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -17654,15 +17654,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -17676,67 +17676,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -17750,15 +17750,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17772,15 +17772,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -17794,15 +17794,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17816,15 +17816,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -17838,15 +17838,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -17860,15 +17860,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -17882,15 +17882,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17904,15 +17904,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -17926,15 +17926,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -17948,15 +17948,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -17970,15 +17970,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -17992,15 +17992,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -18014,15 +18014,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -18036,15 +18036,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18058,15 +18058,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -18080,15 +18080,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -18102,67 +18102,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-inch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18176,15 +18176,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18198,15 +18198,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:food - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:food AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -18220,15 +18220,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -18242,15 +18242,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -18264,15 +18264,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -18286,15 +18286,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -18308,15 +18308,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18330,15 +18330,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18352,15 +18352,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -18374,15 +18374,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18396,15 +18396,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -18418,15 +18418,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -18440,15 +18440,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -18462,15 +18462,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -18484,15 +18484,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18506,15 +18506,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -18528,15 +18528,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -18550,15 +18550,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -18572,15 +18572,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -18594,15 +18594,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18616,15 +18616,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -18638,15 +18638,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -18660,15 +18660,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -18682,15 +18682,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -18704,145 +18704,145 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INHIBITS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-STIMULATES-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orgf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' topp-STIMULATES-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PART_OF-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -18856,15 +18856,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -18878,15 +18878,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -18900,15 +18900,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -18922,15 +18922,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -18944,15 +18944,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -18966,67 +18966,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-bpoc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -19040,15 +19040,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -19062,15 +19062,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -19084,15 +19084,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19106,15 +19106,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -19128,15 +19128,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -19150,15 +19150,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -19172,15 +19172,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -19194,15 +19194,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19216,15 +19216,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19238,15 +19238,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19260,15 +19260,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -19282,15 +19282,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19304,15 +19304,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19326,15 +19326,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -19348,15 +19348,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19370,15 +19370,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19392,67 +19392,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-COEXISTS_WITH-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -19466,15 +19466,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -19488,15 +19488,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -19510,15 +19510,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19532,15 +19532,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19554,15 +19554,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19576,15 +19576,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -19598,15 +19598,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -19620,93 +19620,93 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt,umls-LOCATION_OF-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -19720,15 +19720,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -19742,41 +19742,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' neop-AFFECTS-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19790,15 +19790,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19812,15 +19812,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -19834,15 +19834,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19856,15 +19856,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -19878,15 +19878,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:moft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -19900,15 +19900,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -19922,15 +19922,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -19944,15 +19944,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -19966,15 +19966,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -19988,15 +19988,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:neop AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20010,15 +20010,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -20032,15 +20032,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -20054,15 +20054,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20076,15 +20076,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -20098,15 +20098,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -20120,15 +20120,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:fndg + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -20142,15 +20142,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -20164,15 +20164,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20186,15 +20186,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20208,15 +20208,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -20230,15 +20230,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -20252,15 +20252,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -20274,15 +20274,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -20296,15 +20296,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -20318,15 +20318,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -20340,41 +20340,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -20388,41 +20388,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb-CAUSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20436,15 +20436,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20458,15 +20458,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -20480,15 +20480,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20502,15 +20502,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20524,41 +20524,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -20572,15 +20572,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20594,41 +20594,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PREDISPOSES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20642,15 +20642,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -20664,15 +20664,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20686,15 +20686,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -20708,15 +20708,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20730,67 +20730,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -20804,15 +20804,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -20826,67 +20826,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-fndg: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -20900,15 +20900,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20922,15 +20922,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -20944,15 +20944,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -20966,15 +20966,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -20988,15 +20988,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -21010,15 +21010,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -21032,15 +21032,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21054,15 +21054,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21076,15 +21076,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -21098,15 +21098,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -21120,15 +21120,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21142,15 +21142,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -21164,15 +21164,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -21186,15 +21186,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21208,15 +21208,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -21230,15 +21230,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -21252,15 +21252,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -21274,15 +21274,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -21296,41 +21296,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -21344,15 +21344,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -21366,15 +21366,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -21388,15 +21388,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -21410,67 +21410,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-celf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' hops-COEXISTS_WITH-inch-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21484,15 +21484,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21506,15 +21506,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -21528,15 +21528,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -21550,15 +21550,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21572,15 +21572,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21594,15 +21594,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -21616,15 +21616,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -21638,15 +21638,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21660,15 +21660,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:ortf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -21682,15 +21682,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -21704,15 +21704,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21726,15 +21726,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -21748,15 +21748,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21770,15 +21770,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -21792,15 +21792,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -21814,15 +21814,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21836,15 +21836,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -21858,15 +21858,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -21880,15 +21880,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -21902,15 +21902,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21924,15 +21924,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21946,15 +21946,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -21968,15 +21968,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -21990,15 +21990,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -22012,15 +22012,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -22034,15 +22034,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:fndg + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -22056,15 +22056,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bdsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -22078,15 +22078,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22100,67 +22100,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-INTERACTS_WITH-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -22174,15 +22174,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -22196,15 +22196,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -22218,15 +22218,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -22240,41 +22240,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-PROCESS_OF-aggp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -22288,15 +22288,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:sosy AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -22310,15 +22310,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -22332,15 +22332,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -22354,15 +22354,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22376,15 +22376,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22398,15 +22398,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -22420,67 +22420,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm,ncbigene-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-COEXISTS_WITH-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22494,15 +22494,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -22516,15 +22516,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -22538,15 +22538,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22560,15 +22560,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22582,15 +22582,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -22604,15 +22604,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -22626,15 +22626,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -22648,15 +22648,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -22670,15 +22670,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -22692,15 +22692,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22714,15 +22714,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -22736,15 +22736,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -22758,15 +22758,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -22780,15 +22780,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -22802,15 +22802,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -22824,15 +22824,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -22846,15 +22846,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -22868,15 +22868,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -22890,15 +22890,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -22912,15 +22912,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -22934,15 +22934,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -22956,15 +22956,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -22978,15 +22978,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -23000,15 +23000,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -23022,15 +23022,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -23044,15 +23044,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -23066,15 +23066,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -23088,67 +23088,67 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bact-PRODUCES-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23162,15 +23162,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -23184,15 +23184,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orga - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orga AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: OrganismAttribute @@ -23206,15 +23206,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -23228,15 +23228,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -23250,15 +23250,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23272,15 +23272,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23294,15 +23294,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -23316,15 +23316,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23338,15 +23338,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23360,15 +23360,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23382,15 +23382,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -23404,15 +23404,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23426,15 +23426,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23448,15 +23448,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -23470,15 +23470,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23492,15 +23492,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -23514,15 +23514,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23536,15 +23536,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23558,15 +23558,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -23580,15 +23580,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:celc AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -23602,15 +23602,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -23624,41 +23624,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' phsu-CAUSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23672,15 +23672,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23694,15 +23694,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -23716,15 +23716,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23738,15 +23738,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -23760,15 +23760,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -23782,15 +23782,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -23804,15 +23804,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -23826,15 +23826,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23848,15 +23848,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -23870,15 +23870,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -23892,15 +23892,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -23914,15 +23914,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -23936,15 +23936,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -23958,15 +23958,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -23980,15 +23980,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24002,15 +24002,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24024,41 +24024,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' carb-CAUSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24072,15 +24072,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24094,15 +24094,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24116,15 +24116,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24138,15 +24138,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -24160,15 +24160,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -24182,15 +24182,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24204,15 +24204,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -24226,15 +24226,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -24248,15 +24248,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24270,15 +24270,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -24292,15 +24292,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -24314,15 +24314,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -24336,15 +24336,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -24358,15 +24358,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24380,15 +24380,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24402,15 +24402,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -24424,15 +24424,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24446,15 +24446,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24468,15 +24468,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24490,15 +24490,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -24512,15 +24512,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -24534,15 +24534,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24556,15 +24556,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -24578,15 +24578,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -24600,15 +24600,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24622,15 +24622,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24644,15 +24644,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24666,15 +24666,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -24688,15 +24688,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24710,15 +24710,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -24732,15 +24732,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -24754,15 +24754,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -24776,15 +24776,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -24798,15 +24798,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24820,15 +24820,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24842,15 +24842,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -24864,15 +24864,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -24886,41 +24886,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' moft-CAUSES-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -24934,15 +24934,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -24956,15 +24956,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -24978,15 +24978,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25000,15 +25000,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -25022,15 +25022,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -25044,15 +25044,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25066,67 +25066,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INHIBITS-ortf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -25140,15 +25140,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -25162,15 +25162,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -25184,15 +25184,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -25206,15 +25206,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -25228,15 +25228,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -25250,15 +25250,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -25272,41 +25272,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fngs,umls-LOCATION_OF-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -25320,15 +25320,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -25342,15 +25342,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25364,15 +25364,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orga - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orga AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: OrganismAttribute @@ -25386,15 +25386,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25408,15 +25408,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25430,15 +25430,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -25452,15 +25452,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -25474,41 +25474,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs,ncbigene-PART_OF-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -25522,15 +25522,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -25544,15 +25544,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -25566,15 +25566,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -25588,15 +25588,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25610,15 +25610,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25632,15 +25632,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -25654,15 +25654,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -25676,15 +25676,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25698,15 +25698,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25720,15 +25720,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -25742,15 +25742,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25764,15 +25764,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -25786,15 +25786,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -25808,15 +25808,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -25830,15 +25830,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25852,15 +25852,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -25874,15 +25874,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -25896,41 +25896,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -25944,15 +25944,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -25966,15 +25966,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -25988,15 +25988,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -26010,15 +26010,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -26032,15 +26032,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -26054,15 +26054,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -26076,15 +26076,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26098,15 +26098,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26120,15 +26120,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -26142,15 +26142,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -26164,15 +26164,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -26186,15 +26186,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26208,67 +26208,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-elii: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26282,15 +26282,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -26304,15 +26304,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -26326,15 +26326,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -26348,15 +26348,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orgf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -26370,41 +26370,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -26418,15 +26418,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -26440,15 +26440,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -26462,15 +26462,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -26484,15 +26484,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -26506,15 +26506,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26528,15 +26528,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -26550,15 +26550,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26572,41 +26572,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PART_OF-fngs,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -26620,15 +26620,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -26642,15 +26642,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26664,15 +26664,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -26686,15 +26686,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26708,15 +26708,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26730,67 +26730,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-PRECEDES-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -26804,15 +26804,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -26826,15 +26826,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26848,15 +26848,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -26870,15 +26870,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26892,41 +26892,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -26940,15 +26940,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -26962,15 +26962,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -26984,15 +26984,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -27006,15 +27006,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:inpo AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -27028,67 +27028,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -27102,15 +27102,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -27124,15 +27124,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -27146,15 +27146,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27168,15 +27168,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -27190,15 +27190,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -27212,15 +27212,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -27234,15 +27234,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -27256,15 +27256,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27278,15 +27278,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27300,15 +27300,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -27322,15 +27322,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -27344,15 +27344,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27366,15 +27366,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27388,15 +27388,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -27410,15 +27410,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27432,15 +27432,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -27454,15 +27454,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -27476,15 +27476,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -27498,15 +27498,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -27520,15 +27520,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27542,119 +27542,119 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,ncbigene-INHIBITS-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nsba-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-STIMULATES-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm,umls-INTERACTS_WITH-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -27668,15 +27668,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -27690,15 +27690,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:moft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -27712,15 +27712,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27734,15 +27734,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27756,15 +27756,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -27778,15 +27778,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27800,15 +27800,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -27822,15 +27822,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27844,15 +27844,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -27866,15 +27866,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -27888,15 +27888,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -27910,15 +27910,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -27932,15 +27932,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -27954,41 +27954,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' carb-ASSOCIATED_WITH-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28002,15 +28002,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28024,15 +28024,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -28046,15 +28046,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -28068,15 +28068,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -28090,15 +28090,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -28112,15 +28112,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28134,15 +28134,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -28156,15 +28156,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -28178,15 +28178,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28200,15 +28200,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -28222,15 +28222,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -28244,67 +28244,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PREDISPOSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28318,15 +28318,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -28340,15 +28340,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28362,15 +28362,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:neop AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28384,15 +28384,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -28406,15 +28406,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -28428,15 +28428,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28450,15 +28450,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -28472,15 +28472,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -28494,67 +28494,67 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28568,41 +28568,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -28616,15 +28616,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -28638,15 +28638,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28660,15 +28660,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28682,15 +28682,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28704,15 +28704,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -28726,15 +28726,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -28748,15 +28748,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -28770,15 +28770,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -28792,41 +28792,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-COEXISTS_WITH-phsf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -28840,41 +28840,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-ASSOCIATED_WITH-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -28888,15 +28888,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -28910,15 +28910,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -28932,41 +28932,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -28980,41 +28980,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' moft-AFFECTS-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -29028,15 +29028,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -29050,15 +29050,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -29072,15 +29072,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -29094,15 +29094,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -29116,15 +29116,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -29138,15 +29138,15 @@ components: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29160,15 +29160,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inbe - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inbe AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -29182,15 +29182,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29204,15 +29204,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -29226,15 +29226,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -29248,15 +29248,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29270,15 +29270,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -29292,15 +29292,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29314,15 +29314,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -29336,41 +29336,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -29384,15 +29384,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -29406,67 +29406,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREDISPOSES-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -29480,15 +29480,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -29502,15 +29502,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29524,15 +29524,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -29546,15 +29546,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29568,15 +29568,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29590,41 +29590,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' comd-AFFECTS-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -29638,15 +29638,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29660,15 +29660,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29682,15 +29682,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -29704,15 +29704,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:orgf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -29726,15 +29726,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29748,15 +29748,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sosy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -29770,15 +29770,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -29792,15 +29792,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29814,15 +29814,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29836,15 +29836,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29858,15 +29858,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -29880,15 +29880,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -29902,15 +29902,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -29924,15 +29924,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -29946,15 +29946,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -29968,15 +29968,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -29990,15 +29990,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30012,67 +30012,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-bacs,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp,ncbigene-PART_OF-fngs,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -30086,41 +30086,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30134,15 +30134,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30156,15 +30156,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:diap AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -30178,15 +30178,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -30200,15 +30200,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -30222,15 +30222,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -30244,15 +30244,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30266,41 +30266,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -30314,15 +30314,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -30336,15 +30336,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -30358,15 +30358,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -30380,15 +30380,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -30402,15 +30402,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30424,15 +30424,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30446,15 +30446,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -30468,15 +30468,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30490,15 +30490,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30512,15 +30512,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30534,15 +30534,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bsoj AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -30556,15 +30556,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -30578,15 +30578,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -30600,15 +30600,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -30622,15 +30622,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -30644,15 +30644,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -30666,15 +30666,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30688,15 +30688,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -30710,15 +30710,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -30732,15 +30732,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bdsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -30754,15 +30754,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30776,15 +30776,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -30798,15 +30798,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -30820,15 +30820,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -30842,15 +30842,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -30864,15 +30864,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -30886,15 +30886,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30908,15 +30908,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30930,15 +30930,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -30952,15 +30952,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -30974,15 +30974,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -30996,15 +30996,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -31018,15 +31018,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -31040,15 +31040,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31062,15 +31062,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31084,15 +31084,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31106,15 +31106,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -31128,15 +31128,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31150,15 +31150,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31172,15 +31172,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -31194,67 +31194,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PROCESS_OF-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -31268,15 +31268,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -31290,15 +31290,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -31312,15 +31312,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -31334,15 +31334,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31356,15 +31356,15 @@ components: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inbe - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inbe AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -31378,15 +31378,15 @@ components: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inbe - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inbe AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -31400,15 +31400,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31422,15 +31422,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31444,15 +31444,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -31466,67 +31466,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-AFFECTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -31540,15 +31540,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31562,15 +31562,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -31584,15 +31584,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -31606,15 +31606,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31628,41 +31628,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31676,15 +31676,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -31698,15 +31698,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -31720,41 +31720,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31768,15 +31768,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31790,15 +31790,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -31812,15 +31812,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31834,15 +31834,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -31856,15 +31856,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -31878,15 +31878,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -31900,15 +31900,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31922,15 +31922,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -31944,15 +31944,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -31966,15 +31966,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -31988,15 +31988,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -32010,15 +32010,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32032,15 +32032,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32054,15 +32054,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32076,15 +32076,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32098,15 +32098,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32120,15 +32120,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -32142,15 +32142,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32164,15 +32164,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -32186,15 +32186,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -32208,15 +32208,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32230,67 +32230,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' neop-AFFECTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32304,15 +32304,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -32326,15 +32326,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -32348,15 +32348,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32370,15 +32370,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32392,15 +32392,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -32414,67 +32414,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32488,15 +32488,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -32510,15 +32510,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32532,41 +32532,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INTERACTS_WITH-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32580,15 +32580,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32602,15 +32602,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32624,41 +32624,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREVENTS-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -32672,15 +32672,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -32694,15 +32694,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -32716,15 +32716,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -32738,15 +32738,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -32760,15 +32760,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -32782,15 +32782,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -32804,15 +32804,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32826,15 +32826,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -32848,15 +32848,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -32870,15 +32870,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -32892,15 +32892,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -32914,41 +32914,41 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -32962,15 +32962,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -32984,15 +32984,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33006,15 +33006,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -33028,15 +33028,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -33050,15 +33050,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33072,15 +33072,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33094,15 +33094,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33116,15 +33116,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33138,15 +33138,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33160,15 +33160,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33182,15 +33182,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -33204,15 +33204,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33226,15 +33226,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -33248,15 +33248,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -33270,15 +33270,15 @@ components: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33292,15 +33292,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -33314,15 +33314,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33336,15 +33336,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33358,67 +33358,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -33432,15 +33432,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -33454,15 +33454,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33476,15 +33476,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -33498,15 +33498,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33520,15 +33520,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -33542,15 +33542,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -33564,15 +33564,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33586,15 +33586,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33608,15 +33608,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:food AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -33630,15 +33630,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -33652,15 +33652,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33674,15 +33674,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33696,15 +33696,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -33718,15 +33718,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -33740,15 +33740,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -33762,15 +33762,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -33784,15 +33784,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -33806,15 +33806,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33828,15 +33828,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33850,15 +33850,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -33872,15 +33872,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -33894,15 +33894,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -33916,15 +33916,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -33938,15 +33938,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -33960,15 +33960,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -33982,15 +33982,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34004,15 +34004,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -34026,15 +34026,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34048,15 +34048,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -34070,15 +34070,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34092,15 +34092,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -34114,15 +34114,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -34136,15 +34136,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34158,15 +34158,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34180,15 +34180,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -34202,15 +34202,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34224,15 +34224,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34246,15 +34246,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -34268,15 +34268,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -34290,15 +34290,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34312,41 +34312,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -34360,15 +34360,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -34382,67 +34382,67 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AUGMENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34456,15 +34456,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34478,15 +34478,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34500,15 +34500,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -34522,15 +34522,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -34544,41 +34544,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' virs-CAUSES-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -34592,15 +34592,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:virs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -34614,15 +34614,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -34636,15 +34636,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34658,15 +34658,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -34680,15 +34680,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -34702,15 +34702,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34724,15 +34724,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -34746,15 +34746,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -34768,15 +34768,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -34790,41 +34790,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -34838,41 +34838,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-ASSOCIATED_WITH-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34886,15 +34886,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -34908,15 +34908,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34930,15 +34930,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34952,15 +34952,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -34974,15 +34974,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -34996,15 +34996,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35018,15 +35018,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35040,67 +35040,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' inch-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35114,15 +35114,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35136,15 +35136,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35158,15 +35158,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -35180,67 +35180,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-aapp,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-PREDISPOSES-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -35254,15 +35254,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -35276,41 +35276,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -35324,15 +35324,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -35346,15 +35346,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35368,15 +35368,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -35390,15 +35390,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -35412,15 +35412,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -35434,15 +35434,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -35456,15 +35456,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inbe - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inbe AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -35478,15 +35478,15 @@ components: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35500,41 +35500,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35548,15 +35548,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -35570,15 +35570,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:mobd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35592,41 +35592,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-antb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35640,15 +35640,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35662,15 +35662,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35684,15 +35684,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -35706,15 +35706,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -35728,15 +35728,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -35750,15 +35750,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:cell + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -35772,15 +35772,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35794,15 +35794,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -35816,15 +35816,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -35838,15 +35838,15 @@ components: inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -35860,15 +35860,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -35882,15 +35882,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35904,15 +35904,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -35926,15 +35926,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -35948,15 +35948,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -35970,41 +35970,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -36018,41 +36018,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-moft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -36066,15 +36066,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -36088,41 +36088,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -36136,15 +36136,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36158,15 +36158,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36180,41 +36180,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' emst-PART_OF-bact: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -36228,15 +36228,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -36250,15 +36250,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -36272,15 +36272,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36294,15 +36294,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36316,15 +36316,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -36338,15 +36338,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -36360,15 +36360,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36382,15 +36382,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -36404,15 +36404,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36426,15 +36426,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -36448,15 +36448,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -36470,15 +36470,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -36492,15 +36492,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -36514,15 +36514,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -36536,15 +36536,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -36558,15 +36558,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -36580,15 +36580,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -36602,15 +36602,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36624,41 +36624,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AFFECTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36672,41 +36672,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36720,15 +36720,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -36742,15 +36742,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36764,15 +36764,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -36786,15 +36786,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -36808,15 +36808,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -36830,15 +36830,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -36852,15 +36852,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36874,15 +36874,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -36896,15 +36896,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -36918,15 +36918,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -36940,15 +36940,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -36962,41 +36962,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-comd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37010,15 +37010,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37032,15 +37032,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -37054,15 +37054,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37076,41 +37076,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' vita-ASSOCIATED_WITH-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37124,15 +37124,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37146,15 +37146,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37168,15 +37168,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37190,15 +37190,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37212,15 +37212,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37234,15 +37234,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -37256,15 +37256,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -37278,15 +37278,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -37300,15 +37300,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -37322,15 +37322,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -37344,41 +37344,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dora-PREDISPOSES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37392,15 +37392,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:dora AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -37414,41 +37414,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PART_OF-fngs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -37462,15 +37462,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -37484,15 +37484,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37506,15 +37506,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:sosy AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -37528,15 +37528,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37550,15 +37550,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -37572,15 +37572,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37594,15 +37594,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37616,15 +37616,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37638,15 +37638,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -37660,15 +37660,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -37682,15 +37682,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:clnd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:clnd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -37704,15 +37704,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -37726,15 +37726,15 @@ components: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -37748,15 +37748,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inbe - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inbe AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -37770,15 +37770,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -37792,15 +37792,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -37814,15 +37814,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -37836,15 +37836,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -37858,41 +37858,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-ADMINISTERED_TO-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37906,15 +37906,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -37928,15 +37928,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37950,15 +37950,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -37972,15 +37972,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -37994,41 +37994,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-CAUSES-orgf,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -38042,15 +38042,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38064,15 +38064,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -38086,15 +38086,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38108,15 +38108,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38130,15 +38130,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38152,15 +38152,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38174,15 +38174,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38196,15 +38196,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -38218,15 +38218,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38240,15 +38240,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -38262,15 +38262,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -38284,15 +38284,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -38306,41 +38306,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celf-COEXISTS_WITH-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38354,15 +38354,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:celf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -38376,15 +38376,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -38398,15 +38398,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38420,15 +38420,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38442,15 +38442,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -38464,15 +38464,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -38486,15 +38486,15 @@ components: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -38508,15 +38508,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:inbe - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:inbe AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Behavior @@ -38530,15 +38530,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38552,15 +38552,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -38574,15 +38574,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -38596,41 +38596,41 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' anab-LOCATION_OF-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38644,41 +38644,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm-PREVENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38692,15 +38692,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -38714,15 +38714,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sosy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -38736,15 +38736,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -38758,15 +38758,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -38780,15 +38780,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -38802,15 +38802,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38824,15 +38824,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -38846,15 +38846,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -38868,15 +38868,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -38890,15 +38890,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -38912,119 +38912,119 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-bpoc,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AUGMENTS-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-CAUSES-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39038,15 +39038,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39060,15 +39060,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -39082,15 +39082,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -39104,15 +39104,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -39126,15 +39126,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39148,15 +39148,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -39170,15 +39170,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -39192,15 +39192,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39214,15 +39214,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39236,41 +39236,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-INTERACTS_WITH-nsba-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39284,15 +39284,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39306,15 +39306,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39328,41 +39328,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-CAUSES-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39376,15 +39376,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39398,41 +39398,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -39446,15 +39446,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -39468,15 +39468,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39490,41 +39490,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-COEXISTS_WITH-gngm,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -39538,15 +39538,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39560,15 +39560,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39582,15 +39582,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -39604,15 +39604,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -39626,15 +39626,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -39648,15 +39648,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -39670,15 +39670,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39692,15 +39692,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39714,15 +39714,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39736,41 +39736,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' comd-COEXISTS_WITH-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39784,41 +39784,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-ASSOCIATED_WITH-mobd,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -39832,41 +39832,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INTERACTS_WITH-cell,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -39880,15 +39880,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39902,15 +39902,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -39924,41 +39924,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-CAUSES-patf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -39972,15 +39972,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -39994,15 +39994,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40016,15 +40016,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -40038,41 +40038,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40086,15 +40086,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -40108,93 +40108,93 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-ortf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' diap-CAUSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -40208,67 +40208,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-nsba: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40282,15 +40282,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40304,15 +40304,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -40326,15 +40326,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -40348,15 +40348,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -40370,15 +40370,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -40392,15 +40392,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40414,15 +40414,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -40436,15 +40436,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40458,15 +40458,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40480,15 +40480,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -40502,15 +40502,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -40524,15 +40524,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40546,15 +40546,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -40568,15 +40568,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -40590,15 +40590,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40612,15 +40612,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -40634,15 +40634,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40656,15 +40656,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -40678,15 +40678,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sosy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -40700,15 +40700,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40722,41 +40722,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CONVERTS_TO-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40770,15 +40770,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40792,15 +40792,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -40814,15 +40814,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -40836,15 +40836,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40858,41 +40858,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -40906,15 +40906,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40928,15 +40928,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40950,15 +40950,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -40972,15 +40972,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -40994,15 +40994,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41016,15 +41016,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -41038,15 +41038,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -41060,15 +41060,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -41082,15 +41082,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41104,15 +41104,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:ortf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -41126,15 +41126,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -41148,15 +41148,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -41170,15 +41170,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -41192,15 +41192,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -41214,15 +41214,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -41236,41 +41236,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-COEXISTS_WITH-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41284,15 +41284,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41306,15 +41306,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -41328,15 +41328,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41350,15 +41350,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -41372,15 +41372,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:inpo AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -41394,15 +41394,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -41416,15 +41416,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -41438,15 +41438,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -41460,15 +41460,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -41482,15 +41482,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -41504,15 +41504,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -41526,15 +41526,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -41548,15 +41548,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -41570,15 +41570,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -41592,15 +41592,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -41614,15 +41614,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -41636,15 +41636,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41658,15 +41658,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -41680,41 +41680,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -41728,15 +41728,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -41750,15 +41750,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -41772,41 +41772,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -41820,15 +41820,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -41842,15 +41842,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -41864,15 +41864,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -41886,15 +41886,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -41908,41 +41908,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dora-TREATS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -41956,15 +41956,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -41978,15 +41978,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -42000,15 +42000,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -42022,67 +42022,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-phsu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PRODUCES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -42096,15 +42096,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -42118,15 +42118,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -42140,15 +42140,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42162,119 +42162,119 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42288,15 +42288,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -42310,15 +42310,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42332,15 +42332,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -42354,15 +42354,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -42376,15 +42376,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -42398,15 +42398,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42420,15 +42420,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -42442,93 +42442,93 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-INHIBITS-bacs,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INHIBITS-bacs,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-COEXISTS_WITH-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42542,15 +42542,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42564,15 +42564,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42586,15 +42586,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -42608,15 +42608,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -42630,15 +42630,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42652,15 +42652,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42674,15 +42674,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42696,15 +42696,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:celf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -42718,15 +42718,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42740,15 +42740,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42762,15 +42762,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -42784,15 +42784,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -42806,15 +42806,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42828,15 +42828,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -42850,15 +42850,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -42872,15 +42872,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -42894,15 +42894,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -42916,67 +42916,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AUGMENTS-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-COEXISTS_WITH-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -42990,15 +42990,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43012,15 +43012,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43034,41 +43034,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43082,15 +43082,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43104,15 +43104,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43126,41 +43126,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43174,15 +43174,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43196,15 +43196,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43218,67 +43218,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-STIMULATES-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -43292,15 +43292,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43314,15 +43314,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43336,41 +43336,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PART_OF-fngs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -43384,15 +43384,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -43406,15 +43406,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43428,67 +43428,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43502,41 +43502,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-COEXISTS_WITH-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -43550,15 +43550,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -43572,41 +43572,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,ncbigene-CAUSES-celf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -43620,15 +43620,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43642,41 +43642,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-comd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43690,15 +43690,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -43712,15 +43712,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43734,15 +43734,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -43756,15 +43756,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -43778,15 +43778,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43800,15 +43800,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -43822,15 +43822,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43844,15 +43844,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -43866,15 +43866,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -43888,15 +43888,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -43910,15 +43910,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -43932,15 +43932,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -43954,15 +43954,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -43976,15 +43976,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -43998,15 +43998,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44020,15 +44020,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44042,15 +44042,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44064,15 +44064,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -44086,15 +44086,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -44108,15 +44108,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -44130,15 +44130,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -44152,15 +44152,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -44174,15 +44174,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44196,15 +44196,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44218,15 +44218,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44240,15 +44240,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -44262,41 +44262,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AFFECTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44310,15 +44310,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44332,15 +44332,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44354,15 +44354,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44376,67 +44376,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-nsba: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44450,15 +44450,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44472,67 +44472,67 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44546,41 +44546,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREDISPOSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44594,15 +44594,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -44616,15 +44616,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44638,15 +44638,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44660,41 +44660,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -44708,15 +44708,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44730,15 +44730,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44752,15 +44752,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44774,15 +44774,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -44796,15 +44796,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -44818,15 +44818,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44840,15 +44840,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -44862,15 +44862,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -44884,67 +44884,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COEXISTS_WITH-inpo-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -44958,67 +44958,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-STIMULATES-inch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-PRODUCES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -45032,41 +45032,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' phsu,ncbigene-TREATS-neop,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45080,15 +45080,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45102,15 +45102,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -45124,15 +45124,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -45146,15 +45146,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45168,15 +45168,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45190,15 +45190,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -45212,15 +45212,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -45234,15 +45234,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -45256,15 +45256,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45278,15 +45278,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45300,15 +45300,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -45322,15 +45322,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45344,15 +45344,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45366,15 +45366,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -45388,15 +45388,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -45410,93 +45410,93 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -45510,15 +45510,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -45532,15 +45532,15 @@ components: inputs: - id: UMLS semantic: Behavior - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45554,15 +45554,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -45576,15 +45576,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45598,15 +45598,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45620,15 +45620,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45642,67 +45642,67 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INHIBITS-horm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -45716,15 +45716,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -45738,41 +45738,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' patf-ASSOCIATED_WITH-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -45786,15 +45786,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -45808,15 +45808,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45830,15 +45830,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45852,15 +45852,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -45874,15 +45874,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -45896,15 +45896,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -45918,15 +45918,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -45940,41 +45940,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -45988,15 +45988,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -46010,15 +46010,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46032,15 +46032,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46054,15 +46054,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46076,15 +46076,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -46098,15 +46098,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -46120,41 +46120,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-CAUSES-comd,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46168,15 +46168,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46190,41 +46190,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' antb-TREATS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46238,41 +46238,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-emst: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -46286,15 +46286,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -46308,15 +46308,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46330,15 +46330,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46352,15 +46352,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46374,15 +46374,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46396,15 +46396,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46418,41 +46418,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46466,15 +46466,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46488,15 +46488,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -46510,15 +46510,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -46532,15 +46532,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -46554,15 +46554,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46576,15 +46576,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -46598,15 +46598,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -46620,15 +46620,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -46642,15 +46642,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46664,41 +46664,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -46712,15 +46712,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -46734,15 +46734,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -46756,41 +46756,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-PART_OF-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -46804,15 +46804,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -46826,15 +46826,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46848,15 +46848,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46870,15 +46870,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -46892,15 +46892,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -46914,15 +46914,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -46936,15 +46936,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:nusq AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -46958,15 +46958,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -46980,15 +46980,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47002,15 +47002,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -47024,15 +47024,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -47046,41 +47046,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-INTERACTS_WITH-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47094,15 +47094,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -47116,15 +47116,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47138,41 +47138,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-COEXISTS_WITH-elii: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47186,67 +47186,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47260,15 +47260,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bodm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -47282,15 +47282,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -47304,15 +47304,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -47326,15 +47326,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -47348,15 +47348,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47370,15 +47370,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -47392,15 +47392,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -47414,15 +47414,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47436,15 +47436,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -47458,41 +47458,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-CAUSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47506,15 +47506,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47528,15 +47528,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47550,15 +47550,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -47572,15 +47572,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -47594,15 +47594,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -47616,15 +47616,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -47638,15 +47638,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -47660,15 +47660,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -47682,41 +47682,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PART_OF-aggp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -47730,15 +47730,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -47752,15 +47752,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -47774,15 +47774,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47796,15 +47796,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47818,119 +47818,119 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-tisu-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-INHIBITS-elii: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-nnon: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -47944,67 +47944,67 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREDISPOSES-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48018,15 +48018,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48040,15 +48040,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -48062,15 +48062,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -48084,41 +48084,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48132,67 +48132,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CAUSES-biof: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -48206,15 +48206,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48228,15 +48228,15 @@ components: inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -48250,15 +48250,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -48272,15 +48272,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -48294,15 +48294,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -48316,15 +48316,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -48338,15 +48338,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48360,15 +48360,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -48382,67 +48382,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-comd-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-PREDISPOSES-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48456,41 +48456,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-biof: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:biof AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -48504,15 +48504,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -48526,15 +48526,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48548,41 +48548,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-inch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48596,15 +48596,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48618,15 +48618,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48640,15 +48640,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48662,15 +48662,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48684,41 +48684,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48732,15 +48732,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -48754,15 +48754,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -48776,15 +48776,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -48798,15 +48798,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -48820,15 +48820,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48842,15 +48842,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48864,15 +48864,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48886,15 +48886,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -48908,15 +48908,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -48930,15 +48930,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -48952,15 +48952,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -48974,15 +48974,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -48996,41 +48996,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49044,15 +49044,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -49066,15 +49066,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -49088,15 +49088,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -49110,15 +49110,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -49132,15 +49132,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -49154,15 +49154,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -49176,15 +49176,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49198,15 +49198,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49220,41 +49220,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -49268,15 +49268,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -49290,15 +49290,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49312,15 +49312,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -49334,15 +49334,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -49356,15 +49356,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49378,41 +49378,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49426,15 +49426,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49448,15 +49448,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49470,15 +49470,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -49492,15 +49492,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -49514,15 +49514,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49536,15 +49536,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49558,15 +49558,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -49580,15 +49580,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -49602,15 +49602,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -49624,15 +49624,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49646,41 +49646,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -49694,15 +49694,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -49716,15 +49716,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -49738,15 +49738,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -49760,15 +49760,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49782,15 +49782,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -49804,67 +49804,67 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-ASSOCIATED_WITH-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -49878,15 +49878,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -49900,15 +49900,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bodm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -49922,15 +49922,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -49944,15 +49944,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -49966,15 +49966,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -49988,41 +49988,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bodm-INTERACTS_WITH-bodm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -50036,15 +50036,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -50058,41 +50058,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -50106,15 +50106,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -50128,15 +50128,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -50150,41 +50150,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-PROCESS_OF-emod-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:ortf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -50198,15 +50198,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -50220,15 +50220,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50242,15 +50242,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -50264,15 +50264,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:phsu AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -50286,15 +50286,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -50308,15 +50308,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -50330,15 +50330,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -50352,15 +50352,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -50374,15 +50374,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50396,41 +50396,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PART_OF-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -50444,15 +50444,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50466,41 +50466,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50514,15 +50514,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -50536,15 +50536,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50558,15 +50558,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50580,15 +50580,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50602,15 +50602,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50624,15 +50624,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50646,15 +50646,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50668,15 +50668,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50690,15 +50690,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -50712,15 +50712,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -50734,15 +50734,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50756,41 +50756,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50804,67 +50804,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-INHIBITS-nsba-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRECEDES-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -50878,15 +50878,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50900,15 +50900,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50922,15 +50922,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -50944,15 +50944,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lbtr AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -50966,15 +50966,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -50988,15 +50988,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51010,15 +51010,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51032,67 +51032,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INHIBITS-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' moft-AFFECTS-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -51106,15 +51106,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -51128,15 +51128,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51150,15 +51150,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51172,15 +51172,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -51194,15 +51194,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -51216,15 +51216,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -51238,15 +51238,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:blor - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:blor AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -51260,15 +51260,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -51282,15 +51282,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -51304,15 +51304,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -51326,67 +51326,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-celc,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-INTERACTS_WITH-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -51400,15 +51400,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51422,41 +51422,41 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-fngs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -51470,15 +51470,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -51492,67 +51492,67 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm,ncbigene-STIMULATES-cell,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' tisu,umls-PRODUCES-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -51566,15 +51566,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -51588,15 +51588,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -51610,15 +51610,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51632,15 +51632,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -51654,15 +51654,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -51676,15 +51676,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -51698,15 +51698,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -51720,15 +51720,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -51742,15 +51742,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51764,67 +51764,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PART_OF-plnt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:plnt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:plnt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -51838,15 +51838,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -51860,15 +51860,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -51882,15 +51882,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -51904,15 +51904,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51926,15 +51926,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -51948,15 +51948,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -51970,67 +51970,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PREDISPOSES-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -52044,15 +52044,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -52066,15 +52066,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -52088,15 +52088,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -52110,15 +52110,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52132,15 +52132,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -52154,15 +52154,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -52176,15 +52176,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52198,15 +52198,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -52220,15 +52220,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -52242,15 +52242,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -52264,15 +52264,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52286,15 +52286,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -52308,15 +52308,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bact AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -52330,15 +52330,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -52352,15 +52352,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52374,15 +52374,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52396,15 +52396,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52418,15 +52418,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52440,15 +52440,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52462,41 +52462,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-phsf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -52510,15 +52510,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -52532,15 +52532,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -52554,15 +52554,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -52576,15 +52576,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52598,41 +52598,41 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52646,15 +52646,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -52668,15 +52668,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -52690,15 +52690,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52712,15 +52712,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52734,15 +52734,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -52756,41 +52756,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-DISRUPTS-neop,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -52804,15 +52804,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -52826,15 +52826,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -52848,15 +52848,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52870,15 +52870,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -52892,15 +52892,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -52914,15 +52914,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -52936,15 +52936,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -52958,67 +52958,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -53032,15 +53032,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -53054,15 +53054,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -53076,41 +53076,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -53124,15 +53124,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -53146,15 +53146,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53168,41 +53168,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' medd-DIAGNOSES-virs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -53216,15 +53216,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:medd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -53238,15 +53238,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -53260,15 +53260,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -53282,15 +53282,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53304,15 +53304,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -53326,15 +53326,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -53348,15 +53348,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53370,15 +53370,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53392,15 +53392,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53414,15 +53414,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -53436,15 +53436,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53458,41 +53458,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-PRODUCES-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -53506,15 +53506,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -53528,15 +53528,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53550,15 +53550,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53572,15 +53572,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53594,15 +53594,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -53616,15 +53616,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -53638,67 +53638,67 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53712,15 +53712,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53734,15 +53734,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53756,15 +53756,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53778,15 +53778,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -53800,15 +53800,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -53822,15 +53822,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53844,15 +53844,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -53866,15 +53866,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -53888,15 +53888,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -53910,15 +53910,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:comd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53932,15 +53932,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -53954,15 +53954,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -53976,15 +53976,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -53998,15 +53998,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:topp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -54020,15 +54020,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54042,15 +54042,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -54064,15 +54064,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -54086,15 +54086,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -54108,15 +54108,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -54130,15 +54130,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -54152,15 +54152,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -54174,15 +54174,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54196,15 +54196,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -54218,15 +54218,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -54240,15 +54240,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -54262,15 +54262,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54284,15 +54284,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -54306,15 +54306,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54328,41 +54328,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -54376,15 +54376,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54398,41 +54398,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -54446,41 +54446,41 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-PART_OF-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -54494,15 +54494,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -54516,15 +54516,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -54538,15 +54538,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -54560,15 +54560,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54582,15 +54582,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -54604,15 +54604,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -54626,15 +54626,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -54648,67 +54648,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-neop,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inpo-COEXISTS_WITH-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -54722,15 +54722,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inpo + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -54744,93 +54744,93 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-biof: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-CAUSES-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54844,15 +54844,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54866,15 +54866,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -54888,15 +54888,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -54910,67 +54910,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,umls-STIMULATES-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp,ncbigene-PREVENTS-inpo,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -54984,15 +54984,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -55006,15 +55006,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -55028,15 +55028,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -55050,67 +55050,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-PRODUCES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -55124,15 +55124,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55146,15 +55146,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55168,15 +55168,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55190,15 +55190,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -55212,15 +55212,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:fngs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -55234,41 +55234,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55282,67 +55282,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-TREATS-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -55356,15 +55356,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -55378,15 +55378,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -55400,15 +55400,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -55422,15 +55422,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55444,15 +55444,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -55466,15 +55466,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55488,15 +55488,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55510,15 +55510,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55532,15 +55532,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55554,15 +55554,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55576,15 +55576,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -55598,15 +55598,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -55620,15 +55620,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:diap + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -55642,15 +55642,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55664,15 +55664,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -55686,15 +55686,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -55708,15 +55708,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55730,15 +55730,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -55752,15 +55752,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55774,15 +55774,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -55796,15 +55796,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -55818,15 +55818,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55840,15 +55840,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -55862,15 +55862,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -55884,15 +55884,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -55906,15 +55906,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -55928,15 +55928,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -55950,15 +55950,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -55972,15 +55972,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -55994,15 +55994,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56016,15 +56016,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -56038,15 +56038,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -56060,15 +56060,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56082,15 +56082,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56104,15 +56104,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56126,41 +56126,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-ASSOCIATED_WITH-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56174,15 +56174,15 @@ components: inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -56196,15 +56196,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:dora AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Activity @@ -56218,41 +56218,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba,umls-INTERACTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56266,15 +56266,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56288,15 +56288,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56310,41 +56310,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56358,41 +56358,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' antb-COEXISTS_WITH-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56406,15 +56406,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56428,41 +56428,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -56476,15 +56476,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -56498,15 +56498,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -56520,15 +56520,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -56542,15 +56542,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56564,15 +56564,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -56586,119 +56586,119 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -56712,15 +56712,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56734,15 +56734,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -56756,41 +56756,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-emst: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -56804,15 +56804,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -56826,15 +56826,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -56848,15 +56848,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -56870,15 +56870,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -56892,15 +56892,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -56914,15 +56914,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -56936,15 +56936,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -56958,67 +56958,67 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57032,41 +57032,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb,umls-INTERACTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57080,15 +57080,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57102,15 +57102,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -57124,15 +57124,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -57146,15 +57146,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -57168,15 +57168,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -57190,15 +57190,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57212,15 +57212,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57234,15 +57234,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57256,15 +57256,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -57278,15 +57278,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -57300,41 +57300,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57348,15 +57348,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:comd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57370,15 +57370,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57392,15 +57392,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57414,15 +57414,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57436,15 +57436,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57458,15 +57458,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57480,41 +57480,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREDISPOSES-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57528,41 +57528,41 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-PART_OF-fngs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -57576,15 +57576,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -57598,15 +57598,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:phsf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -57620,15 +57620,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57642,41 +57642,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-virs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -57690,15 +57690,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -57712,15 +57712,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:fndg AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -57734,15 +57734,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:food AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -57756,15 +57756,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -57778,15 +57778,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -57800,15 +57800,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -57822,15 +57822,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -57844,145 +57844,145 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-STIMULATES-moft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' eico-STIMULATES-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm,umls-COEXISTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -57996,15 +57996,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58018,15 +58018,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -58040,15 +58040,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -58062,41 +58062,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -58110,15 +58110,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -58132,15 +58132,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58154,15 +58154,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -58176,15 +58176,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -58198,15 +58198,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -58220,15 +58220,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58242,15 +58242,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58264,15 +58264,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -58286,41 +58286,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-ortf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -58334,15 +58334,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -58356,15 +58356,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -58378,15 +58378,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -58400,15 +58400,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -58422,41 +58422,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -58470,15 +58470,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -58492,15 +58492,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58514,15 +58514,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -58536,15 +58536,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -58558,15 +58558,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -58580,15 +58580,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -58602,15 +58602,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -58624,15 +58624,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58646,15 +58646,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58668,15 +58668,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -58690,15 +58690,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58712,15 +58712,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58734,41 +58734,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -58782,67 +58782,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' elii-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-INTERACTS_WITH-bodm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -58856,15 +58856,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -58878,15 +58878,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -58900,15 +58900,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -58922,15 +58922,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -58944,67 +58944,67 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-STIMULATES-orch,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' inch-INTERACTS_WITH-bodm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59018,15 +59018,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -59040,15 +59040,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -59062,15 +59062,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:orgf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -59084,15 +59084,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59106,15 +59106,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lbtr - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lbtr AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -59128,15 +59128,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lbtr + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -59150,41 +59150,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celf,umls-AFFECTS-bacs,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -59198,15 +59198,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -59220,15 +59220,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59242,15 +59242,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59264,15 +59264,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -59286,15 +59286,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59308,15 +59308,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59330,93 +59330,93 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRODUCES-enzy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -59430,15 +59430,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -59452,41 +59452,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-COEXISTS_WITH-horm,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59500,15 +59500,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -59522,15 +59522,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -59544,15 +59544,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59566,67 +59566,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PRODUCES-nnon,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59640,15 +59640,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59662,15 +59662,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -59684,15 +59684,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -59706,15 +59706,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59728,15 +59728,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59750,15 +59750,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -59772,15 +59772,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59794,15 +59794,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59816,15 +59816,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -59838,15 +59838,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -59860,15 +59860,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -59882,41 +59882,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-PREDISPOSES-inpo,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -59930,15 +59930,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -59952,15 +59952,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -59974,15 +59974,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -59996,15 +59996,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -60018,15 +60018,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -60040,15 +60040,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -60062,41 +60062,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AFFECTS-bpoc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60110,41 +60110,41 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -60158,15 +60158,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60180,15 +60180,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60202,67 +60202,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-ASSOCIATED_WITH-sosy,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -60276,15 +60276,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -60298,15 +60298,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -60320,15 +60320,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -60342,15 +60342,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -60364,15 +60364,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -60386,67 +60386,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-fndg,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp,ncbigene-PART_OF-blor,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -60460,15 +60460,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60482,15 +60482,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -60504,15 +60504,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -60526,15 +60526,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60548,15 +60548,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -60570,15 +60570,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60592,15 +60592,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60614,15 +60614,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60636,15 +60636,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60658,15 +60658,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60680,41 +60680,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-PART_OF-emst,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -60728,15 +60728,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -60750,15 +60750,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60772,15 +60772,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -60794,15 +60794,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60816,15 +60816,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60838,15 +60838,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60860,15 +60860,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -60882,15 +60882,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60904,15 +60904,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60926,15 +60926,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60948,15 +60948,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -60970,67 +60970,67 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PRODUCES-orch,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61044,15 +61044,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61066,15 +61066,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -61088,15 +61088,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61110,15 +61110,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61132,15 +61132,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lbtr - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lbtr AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -61154,15 +61154,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -61176,15 +61176,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61198,15 +61198,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61220,15 +61220,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -61242,15 +61242,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61264,15 +61264,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -61286,15 +61286,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -61308,15 +61308,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -61330,41 +61330,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61378,15 +61378,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -61400,15 +61400,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61422,15 +61422,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -61444,15 +61444,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61466,15 +61466,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -61488,15 +61488,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -61510,15 +61510,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -61532,15 +61532,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -61554,15 +61554,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -61576,15 +61576,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -61598,15 +61598,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61620,15 +61620,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -61642,15 +61642,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -61664,15 +61664,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61686,41 +61686,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-strd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61734,15 +61734,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -61756,15 +61756,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -61778,15 +61778,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -61800,15 +61800,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -61822,15 +61822,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -61844,15 +61844,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61866,93 +61866,93 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-celc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-ortf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -61966,15 +61966,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -61988,15 +61988,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -62010,15 +62010,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62032,15 +62032,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62054,41 +62054,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-moft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -62102,15 +62102,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -62124,15 +62124,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62146,15 +62146,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62168,15 +62168,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -62190,41 +62190,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AFFECTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62238,15 +62238,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62260,15 +62260,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62282,15 +62282,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -62304,41 +62304,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INTERACTS_WITH-irda,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -62352,15 +62352,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -62374,15 +62374,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62396,15 +62396,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62418,15 +62418,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62440,15 +62440,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62462,15 +62462,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -62484,15 +62484,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -62506,15 +62506,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -62528,15 +62528,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62550,67 +62550,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -62624,15 +62624,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -62646,15 +62646,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:moft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -62668,15 +62668,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62690,15 +62690,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62712,15 +62712,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62734,15 +62734,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62756,15 +62756,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -62778,15 +62778,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:eehu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:eehu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -62800,15 +62800,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -62822,15 +62822,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -62844,15 +62844,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -62866,15 +62866,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62888,15 +62888,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62910,15 +62910,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -62932,41 +62932,41 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-MANIFESTATION_OF-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -62980,15 +62980,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63002,15 +63002,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -63024,15 +63024,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -63046,15 +63046,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63068,15 +63068,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:ortf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -63090,15 +63090,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -63112,15 +63112,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63134,41 +63134,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm-PREDISPOSES-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -63182,15 +63182,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63204,15 +63204,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -63226,15 +63226,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -63248,15 +63248,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -63270,15 +63270,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -63292,67 +63292,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-AUGMENTS-patf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-DISRUPTS-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -63366,15 +63366,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63388,15 +63388,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63410,15 +63410,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -63432,67 +63432,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63506,41 +63506,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-biof: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -63554,15 +63554,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -63576,15 +63576,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63598,15 +63598,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -63620,15 +63620,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -63642,15 +63642,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63664,15 +63664,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63686,15 +63686,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63708,15 +63708,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63730,15 +63730,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -63752,15 +63752,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63774,41 +63774,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63822,15 +63822,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63844,15 +63844,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -63866,15 +63866,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lbtr + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -63888,41 +63888,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63936,15 +63936,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -63958,67 +63958,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu,ncbigene-INHIBITS-ortf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' elii-AFFECTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64032,41 +64032,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INTERACTS_WITH-irda-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64080,67 +64080,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64154,15 +64154,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -64176,15 +64176,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -64198,15 +64198,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -64220,15 +64220,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -64242,15 +64242,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -64264,41 +64264,41 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-LOCATION_OF-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -64312,15 +64312,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -64334,67 +64334,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-INHIBITS-orch,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -64408,15 +64408,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64430,15 +64430,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64452,15 +64452,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64474,15 +64474,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64496,15 +64496,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -64518,15 +64518,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -64540,15 +64540,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -64562,15 +64562,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -64584,41 +64584,41 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' rcpt,umls-INTERACTS_WITH-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -64632,15 +64632,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -64654,15 +64654,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -64676,15 +64676,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64698,15 +64698,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:plnt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:plnt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -64720,15 +64720,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -64742,41 +64742,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -64790,15 +64790,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -64812,15 +64812,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -64834,15 +64834,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -64856,15 +64856,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -64878,15 +64878,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -64900,15 +64900,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64922,15 +64922,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -64944,15 +64944,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:neop AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -64966,15 +64966,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -64988,15 +64988,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:virs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -65010,15 +65010,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65032,15 +65032,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -65054,15 +65054,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65076,15 +65076,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65098,15 +65098,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -65120,15 +65120,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65142,93 +65142,93 @@ components: inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:topp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dora-STIMULATES-topp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:dora - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:dora AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Activity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65242,15 +65242,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -65264,15 +65264,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65286,15 +65286,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65308,15 +65308,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -65330,67 +65330,67 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dora-PREDISPOSES-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Activity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65404,15 +65404,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65426,15 +65426,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65448,15 +65448,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -65470,15 +65470,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -65492,15 +65492,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -65514,15 +65514,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -65536,41 +65536,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-DIAGNOSES-cgab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65584,15 +65584,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:sosy AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -65606,15 +65606,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65628,15 +65628,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -65650,15 +65650,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -65672,15 +65672,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -65694,15 +65694,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -65716,15 +65716,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -65738,15 +65738,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -65760,15 +65760,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65782,15 +65782,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65804,15 +65804,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65826,15 +65826,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -65848,15 +65848,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65870,15 +65870,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65892,15 +65892,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65914,15 +65914,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65936,15 +65936,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -65958,15 +65958,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -65980,15 +65980,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -66002,15 +66002,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:phsu AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -66024,15 +66024,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -66046,15 +66046,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -66068,15 +66068,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -66090,15 +66090,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -66112,15 +66112,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -66134,15 +66134,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:lbtr - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:lbtr AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -66156,15 +66156,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -66178,41 +66178,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -66226,15 +66226,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -66248,15 +66248,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -66270,15 +66270,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -66292,15 +66292,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66314,15 +66314,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -66336,15 +66336,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -66358,41 +66358,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66406,15 +66406,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66428,15 +66428,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66450,15 +66450,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -66472,15 +66472,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -66494,15 +66494,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -66516,15 +66516,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -66538,15 +66538,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66560,67 +66560,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft,ncbigene-PREVENTS-dsyn,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -66634,15 +66634,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -66656,15 +66656,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66678,15 +66678,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66700,41 +66700,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -66748,15 +66748,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -66770,15 +66770,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -66792,15 +66792,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -66814,15 +66814,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -66836,15 +66836,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -66858,15 +66858,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -66880,15 +66880,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -66902,15 +66902,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -66924,15 +66924,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -66946,15 +66946,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -66968,15 +66968,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -66990,67 +66990,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -67064,15 +67064,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -67086,41 +67086,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt,umls-COEXISTS_WITH-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67134,15 +67134,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -67156,15 +67156,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67178,15 +67178,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -67200,15 +67200,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67222,15 +67222,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -67244,15 +67244,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -67266,15 +67266,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67288,15 +67288,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67310,15 +67310,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67332,15 +67332,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67354,15 +67354,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -67376,15 +67376,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -67398,15 +67398,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -67420,15 +67420,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -67442,15 +67442,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -67464,15 +67464,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -67486,15 +67486,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -67508,41 +67508,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -67556,15 +67556,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67578,15 +67578,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67600,15 +67600,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -67622,15 +67622,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:food - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:food + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Food @@ -67644,41 +67644,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67692,15 +67692,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -67714,15 +67714,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -67736,15 +67736,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67758,15 +67758,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -67780,15 +67780,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -67802,15 +67802,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67824,15 +67824,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -67846,15 +67846,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -67868,15 +67868,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -67890,15 +67890,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -67912,15 +67912,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67934,15 +67934,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67956,15 +67956,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -67978,15 +67978,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -68000,15 +68000,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -68022,15 +68022,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68044,15 +68044,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -68066,15 +68066,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68088,15 +68088,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68110,15 +68110,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -68132,15 +68132,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -68154,15 +68154,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68176,15 +68176,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68198,15 +68198,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:comd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68220,15 +68220,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68242,15 +68242,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -68264,15 +68264,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68286,15 +68286,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -68308,15 +68308,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -68330,15 +68330,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68352,15 +68352,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68374,15 +68374,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -68396,15 +68396,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -68418,15 +68418,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68440,15 +68440,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68462,67 +68462,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68536,15 +68536,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68558,15 +68558,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -68580,15 +68580,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68602,67 +68602,67 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -68676,15 +68676,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -68698,15 +68698,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -68720,15 +68720,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -68742,15 +68742,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -68764,41 +68764,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -68812,15 +68812,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -68834,15 +68834,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -68856,15 +68856,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -68878,15 +68878,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -68900,15 +68900,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -68922,15 +68922,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -68944,15 +68944,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -68966,15 +68966,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -68988,15 +68988,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69010,15 +69010,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69032,15 +69032,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69054,15 +69054,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -69076,15 +69076,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -69098,15 +69098,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69120,15 +69120,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -69142,15 +69142,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -69164,15 +69164,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69186,15 +69186,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69208,15 +69208,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -69230,15 +69230,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69252,15 +69252,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69274,15 +69274,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69296,15 +69296,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69318,15 +69318,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69340,15 +69340,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -69362,15 +69362,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -69384,15 +69384,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -69406,41 +69406,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-AFFECTS-mobd,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -69454,15 +69454,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -69476,15 +69476,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69498,15 +69498,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69520,67 +69520,67 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-ASSOCIATED_WITH-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69594,15 +69594,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:vita AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69616,15 +69616,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -69638,15 +69638,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -69660,41 +69660,41 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69708,15 +69708,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69730,15 +69730,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -69752,15 +69752,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -69774,67 +69774,67 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-STIMULATES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -69848,15 +69848,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -69870,15 +69870,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -69892,119 +69892,119 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' anst-PART_OF-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70018,15 +70018,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -70040,15 +70040,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70062,93 +70062,93 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-anst: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-anst-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' biof-PROCESS_OF-aggp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:aggp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -70162,15 +70162,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:biof AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -70184,15 +70184,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70206,119 +70206,119 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-antb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' opco,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70332,15 +70332,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -70354,41 +70354,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-biof: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -70402,15 +70402,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -70424,15 +70424,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -70446,15 +70446,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -70468,15 +70468,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -70490,15 +70490,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70512,15 +70512,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -70534,15 +70534,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -70556,15 +70556,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -70578,15 +70578,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -70600,15 +70600,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -70622,15 +70622,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70644,15 +70644,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -70666,15 +70666,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -70688,15 +70688,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70710,15 +70710,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70732,15 +70732,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -70754,15 +70754,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -70776,15 +70776,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DIAGNOSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DIAGNOSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70798,15 +70798,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -70820,15 +70820,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70842,15 +70842,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -70864,15 +70864,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70886,15 +70886,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -70908,15 +70908,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -70930,15 +70930,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -70952,67 +70952,67 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-PART_OF-neop,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -71026,15 +71026,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -71048,15 +71048,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71070,41 +71070,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-DISRUPTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71118,15 +71118,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71140,15 +71140,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71162,15 +71162,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71184,15 +71184,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71206,15 +71206,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -71228,15 +71228,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71250,41 +71250,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -71298,15 +71298,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71320,15 +71320,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71342,15 +71342,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -71364,15 +71364,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -71386,15 +71386,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71408,15 +71408,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -71430,41 +71430,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' hops,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71478,15 +71478,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -71500,15 +71500,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -71522,15 +71522,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71544,15 +71544,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71566,15 +71566,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71588,15 +71588,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71610,15 +71610,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -71632,15 +71632,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71654,41 +71654,41 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -71702,15 +71702,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -71724,15 +71724,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:diap AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -71746,15 +71746,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -71768,41 +71768,41 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -71816,15 +71816,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -71838,15 +71838,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -71860,15 +71860,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71882,41 +71882,41 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb,umls-INTERACTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -71930,41 +71930,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' patf,umls-ASSOCIATED_WITH-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -71978,15 +71978,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72000,15 +72000,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72022,15 +72022,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72044,15 +72044,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -72066,15 +72066,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:eehu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:eehu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -72088,15 +72088,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -72110,15 +72110,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -72132,15 +72132,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -72154,15 +72154,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72176,15 +72176,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72198,15 +72198,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -72220,15 +72220,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72242,15 +72242,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -72264,15 +72264,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -72286,15 +72286,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -72308,15 +72308,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -72330,41 +72330,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72378,15 +72378,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72400,15 +72400,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72422,41 +72422,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AFFECTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72470,15 +72470,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72492,15 +72492,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -72514,15 +72514,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -72536,15 +72536,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72558,15 +72558,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -72580,15 +72580,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -72602,41 +72602,41 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-phsf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -72650,15 +72650,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -72672,15 +72672,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -72694,15 +72694,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72716,15 +72716,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -72738,15 +72738,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72760,15 +72760,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72782,15 +72782,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72804,15 +72804,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72826,15 +72826,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -72848,67 +72848,67 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-STIMULATES-elii,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt,umls-COEXISTS_WITH-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -72922,15 +72922,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -72944,15 +72944,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72966,15 +72966,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -72988,15 +72988,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -73010,15 +73010,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -73032,41 +73032,41 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AFFECTS-ortf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73080,15 +73080,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73102,67 +73102,67 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AUGMENTS-inpo-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-DISRUPTS-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73176,15 +73176,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73198,15 +73198,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -73220,15 +73220,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73242,15 +73242,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73264,15 +73264,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73286,15 +73286,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:orch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73308,15 +73308,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -73330,15 +73330,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73352,41 +73352,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73400,15 +73400,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -73422,41 +73422,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-ASSOCIATED_WITH-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73470,15 +73470,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -73492,15 +73492,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73514,15 +73514,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -73536,15 +73536,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73558,15 +73558,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73580,15 +73580,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73602,15 +73602,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -73624,15 +73624,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -73646,15 +73646,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -73668,15 +73668,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -73690,15 +73690,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -73712,15 +73712,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73734,15 +73734,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73756,15 +73756,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -73778,15 +73778,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -73800,93 +73800,93 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' strd-AUGMENTS-bpoc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-COEXISTS_WITH-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -73900,15 +73900,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -73922,15 +73922,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -73944,15 +73944,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -73966,15 +73966,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -73988,15 +73988,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -74010,15 +74010,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -74032,15 +74032,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -74054,41 +74054,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -74102,15 +74102,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -74124,15 +74124,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -74146,15 +74146,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74168,15 +74168,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -74190,15 +74190,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -74212,15 +74212,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -74234,41 +74234,41 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74282,15 +74282,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74304,15 +74304,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74326,15 +74326,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:comd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -74348,15 +74348,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74370,15 +74370,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74392,15 +74392,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74414,15 +74414,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74436,15 +74436,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -74458,15 +74458,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -74480,15 +74480,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -74502,93 +74502,93 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft,umls-INHIBITS-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-ASSOCIATED_WITH-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -74602,15 +74602,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -74624,15 +74624,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74646,15 +74646,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74668,15 +74668,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -74690,15 +74690,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -74712,15 +74712,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -74734,15 +74734,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -74756,15 +74756,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74778,41 +74778,41 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74826,15 +74826,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -74848,15 +74848,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -74870,41 +74870,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-moft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -74918,15 +74918,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -74940,15 +74940,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -74962,15 +74962,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -74984,15 +74984,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75006,15 +75006,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -75028,15 +75028,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -75050,15 +75050,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -75072,15 +75072,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -75094,15 +75094,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75116,15 +75116,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75138,15 +75138,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -75160,15 +75160,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75182,15 +75182,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -75204,15 +75204,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75226,15 +75226,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75248,93 +75248,93 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75348,15 +75348,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75370,15 +75370,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75392,15 +75392,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75414,41 +75414,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75462,15 +75462,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75484,15 +75484,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:aggp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -75506,15 +75506,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75528,67 +75528,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-DISRUPTS-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -75602,15 +75602,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -75624,15 +75624,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -75646,15 +75646,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -75668,15 +75668,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -75690,15 +75690,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -75712,15 +75712,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75734,15 +75734,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75756,15 +75756,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75778,119 +75778,119 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-acab-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PREDISPOSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75904,41 +75904,41 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRECEDES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -75952,15 +75952,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75974,15 +75974,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -75996,15 +75996,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76018,15 +76018,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76040,15 +76040,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76062,15 +76062,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76084,41 +76084,41 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-COEXISTS_WITH-nusq: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -76132,15 +76132,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -76154,15 +76154,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76176,15 +76176,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76198,15 +76198,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76220,67 +76220,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-enzy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-COEXISTS_WITH-carb,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76294,15 +76294,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76316,15 +76316,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76338,15 +76338,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76360,15 +76360,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -76382,15 +76382,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76404,15 +76404,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -76426,15 +76426,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76448,15 +76448,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76470,145 +76470,145 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76622,15 +76622,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76644,15 +76644,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76666,15 +76666,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -76688,15 +76688,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76710,41 +76710,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PREVENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76758,15 +76758,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76780,15 +76780,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76802,15 +76802,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -76824,15 +76824,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -76846,15 +76846,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -76868,15 +76868,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76890,41 +76890,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-inch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76938,15 +76938,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -76960,15 +76960,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -76982,15 +76982,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:irda - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:irda AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -77004,15 +77004,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77026,15 +77026,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77048,15 +77048,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77070,15 +77070,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77092,15 +77092,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77114,15 +77114,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77136,15 +77136,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -77158,15 +77158,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:orga - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:orga + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: OrganismAttribute @@ -77180,15 +77180,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77202,15 +77202,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77224,15 +77224,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -77246,15 +77246,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77268,15 +77268,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77290,15 +77290,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77312,41 +77312,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-DISRUPTS-tisu,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -77360,15 +77360,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77382,15 +77382,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77404,15 +77404,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -77426,15 +77426,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77448,15 +77448,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77470,15 +77470,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77492,15 +77492,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77514,15 +77514,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77536,15 +77536,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77558,41 +77558,41 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-irda-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77606,15 +77606,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -77628,93 +77628,93 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-imft,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp,ncbigene-INHIBITS-antb,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' neop-MANIFESTATION_OF-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -77728,93 +77728,93 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu,ncbigene-INHIBITS-fndg,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu,ncbigene-INHIBITS-fndg,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm,ncbigene-COEXISTS_WITH-elii,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77828,15 +77828,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -77850,119 +77850,119 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INHIBITS-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AFFECTS-virs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -77976,15 +77976,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -77998,15 +77998,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:comd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78020,41 +78020,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-topp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -78068,15 +78068,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -78090,15 +78090,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -78112,15 +78112,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78134,41 +78134,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-MANIFESTATION_OF-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -78182,15 +78182,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78204,15 +78204,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -78226,41 +78226,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-PRODUCES-nsba,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78274,15 +78274,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78296,15 +78296,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78318,15 +78318,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78340,15 +78340,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78362,41 +78362,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-ASSOCIATED_WITH-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78410,93 +78410,93 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-COEXISTS_WITH-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78510,15 +78510,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78532,15 +78532,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78554,15 +78554,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -78576,15 +78576,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78598,15 +78598,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -78620,41 +78620,41 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' opco-COEXISTS_WITH-inch-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78668,15 +78668,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -78690,15 +78690,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -78712,15 +78712,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78734,15 +78734,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -78756,15 +78756,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -78778,15 +78778,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78800,15 +78800,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78822,41 +78822,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-INTERACTS_WITH-nusq,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nusq + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -78870,15 +78870,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -78892,15 +78892,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -78914,15 +78914,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -78936,15 +78936,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -78958,15 +78958,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -78980,15 +78980,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -79002,15 +79002,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79024,15 +79024,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -79046,41 +79046,41 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-COEXISTS_WITH-nsba,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79094,15 +79094,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79116,15 +79116,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79138,15 +79138,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79160,15 +79160,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79182,15 +79182,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:medd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:medd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -79204,15 +79204,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -79226,15 +79226,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -79248,15 +79248,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79270,15 +79270,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:enzy AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -79292,67 +79292,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INHIBITS-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-ASSOCIATED_WITH-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79366,15 +79366,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -79388,15 +79388,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -79410,15 +79410,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79432,15 +79432,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -79454,15 +79454,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -79476,15 +79476,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -79498,15 +79498,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -79520,15 +79520,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -79542,15 +79542,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -79564,15 +79564,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -79586,15 +79586,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79608,67 +79608,67 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-STIMULATES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79682,15 +79682,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79704,15 +79704,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79726,15 +79726,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -79748,15 +79748,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79770,15 +79770,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79792,15 +79792,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -79814,15 +79814,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -79836,15 +79836,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79858,15 +79858,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79880,15 +79880,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79902,15 +79902,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -79924,41 +79924,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-CONVERTS_TO-bacs,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -79972,15 +79972,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -79994,15 +79994,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80016,15 +80016,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -80038,15 +80038,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -80060,15 +80060,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80082,15 +80082,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80104,15 +80104,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80126,15 +80126,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80148,41 +80148,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRODUCES-enzy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -80196,15 +80196,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -80218,15 +80218,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80240,67 +80240,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-DISRUPTS-celc,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -80314,15 +80314,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80336,15 +80336,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80358,15 +80358,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80380,15 +80380,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80402,41 +80402,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' opco-PREDISPOSES-inpo-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:opco AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80450,15 +80450,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80472,15 +80472,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80494,15 +80494,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80516,15 +80516,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80538,15 +80538,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80560,15 +80560,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80582,15 +80582,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80604,15 +80604,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80626,15 +80626,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -80648,15 +80648,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -80670,15 +80670,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80692,15 +80692,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -80714,15 +80714,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -80736,41 +80736,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -80784,15 +80784,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -80806,15 +80806,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80828,15 +80828,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -80850,41 +80850,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80898,15 +80898,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -80920,15 +80920,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bact AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -80942,15 +80942,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -80964,41 +80964,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' acab-LOCATION_OF-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -81012,15 +81012,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81034,15 +81034,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81056,15 +81056,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81078,15 +81078,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81100,15 +81100,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81122,67 +81122,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INTERACTS_WITH-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81196,67 +81196,67 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AFFECTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81270,15 +81270,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81292,15 +81292,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81314,15 +81314,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -81336,15 +81336,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81358,15 +81358,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -81380,15 +81380,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -81402,15 +81402,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -81424,15 +81424,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81446,15 +81446,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81468,15 +81468,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81490,15 +81490,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -81512,15 +81512,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -81534,15 +81534,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -81556,15 +81556,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -81578,15 +81578,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:blor - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:blor AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -81600,15 +81600,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -81622,41 +81622,41 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PRODUCES-carb,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81670,67 +81670,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' anab-COEXISTS_WITH-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81744,15 +81744,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81766,15 +81766,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81788,15 +81788,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81810,15 +81810,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -81832,15 +81832,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -81854,15 +81854,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -81876,41 +81876,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,umls-PRODUCES-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -81924,15 +81924,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -81946,15 +81946,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -81968,41 +81968,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-nsba: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82016,15 +82016,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82038,15 +82038,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82060,15 +82060,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -82082,15 +82082,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -82104,41 +82104,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' hops-DISRUPTS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82152,15 +82152,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82174,15 +82174,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82196,15 +82196,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82218,41 +82218,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-COEXISTS_WITH-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -82266,15 +82266,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -82288,15 +82288,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -82310,15 +82310,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -82332,15 +82332,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82354,15 +82354,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82376,15 +82376,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82398,15 +82398,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -82420,15 +82420,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -82442,15 +82442,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82464,15 +82464,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82486,41 +82486,41 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-opco: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82534,67 +82534,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-TREATS-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82608,67 +82608,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' anab-PART_OF-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82682,15 +82682,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82704,15 +82704,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82726,15 +82726,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82748,15 +82748,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82770,15 +82770,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82792,15 +82792,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82814,67 +82814,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-ortf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-CAUSES-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82888,15 +82888,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -82910,15 +82910,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82932,15 +82932,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -82954,15 +82954,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -82976,15 +82976,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -82998,15 +82998,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83020,15 +83020,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -83042,15 +83042,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -83064,15 +83064,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -83086,41 +83086,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-phsu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83134,15 +83134,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -83156,15 +83156,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83178,67 +83178,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83252,15 +83252,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -83274,15 +83274,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -83296,15 +83296,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -83318,15 +83318,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -83340,15 +83340,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:acab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83362,15 +83362,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83384,15 +83384,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83406,15 +83406,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -83428,15 +83428,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83450,41 +83450,41 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-CAUSES-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83498,15 +83498,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83520,15 +83520,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83542,15 +83542,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83564,15 +83564,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -83586,15 +83586,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83608,15 +83608,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -83630,15 +83630,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83652,15 +83652,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bdsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -83674,15 +83674,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83696,15 +83696,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -83718,15 +83718,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83740,15 +83740,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -83762,67 +83762,67 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AFFECTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -83836,67 +83836,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-bpoc: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -83910,15 +83910,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -83932,41 +83932,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-MANIFESTATION_OF-ortf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -83980,15 +83980,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -84002,41 +84002,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-CONVERTS_TO-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -84050,15 +84050,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -84072,15 +84072,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84094,15 +84094,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -84116,15 +84116,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84138,15 +84138,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -84160,15 +84160,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -84182,15 +84182,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84204,15 +84204,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84226,15 +84226,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -84248,15 +84248,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -84270,15 +84270,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84292,15 +84292,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84314,15 +84314,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -84336,15 +84336,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84358,15 +84358,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -84380,15 +84380,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -84402,15 +84402,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84424,15 +84424,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -84446,15 +84446,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -84468,15 +84468,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84490,15 +84490,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84512,15 +84512,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84534,15 +84534,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -84556,41 +84556,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-fngs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -84604,15 +84604,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -84626,15 +84626,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84648,15 +84648,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84670,15 +84670,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -84692,15 +84692,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -84714,15 +84714,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:cgab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84736,15 +84736,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -84758,41 +84758,41 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84806,15 +84806,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84828,15 +84828,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -84850,15 +84850,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -84872,15 +84872,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84894,15 +84894,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -84916,15 +84916,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -84938,15 +84938,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84960,15 +84960,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -84982,15 +84982,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -85004,15 +85004,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:cell AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -85026,15 +85026,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85048,15 +85048,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85070,41 +85070,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85118,15 +85118,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85140,15 +85140,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -85162,15 +85162,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -85184,67 +85184,67 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt,umls-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PRODUCES-bacs: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85258,15 +85258,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85280,15 +85280,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bodm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -85302,15 +85302,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -85324,15 +85324,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -85346,15 +85346,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -85368,15 +85368,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85390,15 +85390,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85412,15 +85412,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -85434,15 +85434,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -85456,15 +85456,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:virs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -85478,15 +85478,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -85500,15 +85500,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85522,15 +85522,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85544,15 +85544,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -85566,15 +85566,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85588,15 +85588,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -85610,15 +85610,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85632,15 +85632,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85654,15 +85654,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:fngs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -85676,15 +85676,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:virs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -85698,15 +85698,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:blor AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -85720,15 +85720,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85742,15 +85742,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -85764,15 +85764,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85786,15 +85786,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -85808,15 +85808,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -85830,41 +85830,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-LOCATION_OF-irda: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -85878,15 +85878,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -85900,41 +85900,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-phsu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85948,15 +85948,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -85970,15 +85970,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -85992,15 +85992,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86014,41 +86014,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-inch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86062,15 +86062,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nnon + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86084,67 +86084,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' acab-MANIFESTATION_OF-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86158,41 +86158,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' vita-ASSOCIATED_WITH-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:vita + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86206,15 +86206,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -86228,15 +86228,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -86250,15 +86250,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86272,15 +86272,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86294,15 +86294,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -86316,15 +86316,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -86338,93 +86338,93 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -86438,15 +86438,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -86460,15 +86460,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86482,15 +86482,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86504,15 +86504,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86526,15 +86526,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86548,15 +86548,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -86570,15 +86570,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -86592,93 +86592,93 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-AUGMENTS-cell,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-MANIFESTATION_OF-comd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86692,15 +86692,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86714,15 +86714,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86736,15 +86736,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86758,15 +86758,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86780,15 +86780,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -86802,15 +86802,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:emod - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:emod AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -86824,15 +86824,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86846,15 +86846,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -86868,15 +86868,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -86890,15 +86890,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -86912,15 +86912,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -86934,15 +86934,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -86956,15 +86956,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -86978,15 +86978,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -87000,15 +87000,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87022,15 +87022,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:inpo AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -87044,15 +87044,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87066,15 +87066,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87088,67 +87088,67 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-DISRUPTS-sosy,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -87162,15 +87162,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -87184,15 +87184,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87206,15 +87206,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -87228,15 +87228,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87250,15 +87250,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87272,15 +87272,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87294,15 +87294,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87316,15 +87316,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87338,67 +87338,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:opco AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-AUGMENTS-emst,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -87412,15 +87412,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -87434,15 +87434,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87456,15 +87456,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87478,93 +87478,93 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-enzy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -87578,15 +87578,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87600,15 +87600,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -87622,15 +87622,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87644,67 +87644,67 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87718,15 +87718,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87740,15 +87740,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87762,15 +87762,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -87784,15 +87784,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -87806,15 +87806,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87828,15 +87828,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87850,15 +87850,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -87872,15 +87872,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -87894,15 +87894,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -87916,41 +87916,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-aggp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -87964,15 +87964,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -87986,15 +87986,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88008,15 +88008,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88030,15 +88030,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:emod - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:emod AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -88052,15 +88052,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:carb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88074,15 +88074,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88096,41 +88096,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88144,15 +88144,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -88166,15 +88166,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -88188,15 +88188,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -88210,15 +88210,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88232,15 +88232,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88254,15 +88254,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88276,15 +88276,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88298,15 +88298,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88320,15 +88320,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -88342,15 +88342,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -88364,41 +88364,41 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-celc-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88412,15 +88412,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88434,15 +88434,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -88456,15 +88456,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88478,15 +88478,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88500,15 +88500,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88522,15 +88522,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88544,15 +88544,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88566,41 +88566,41 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-PREVENTS-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88614,41 +88614,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:carb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88662,15 +88662,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -88684,15 +88684,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -88706,15 +88706,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88728,15 +88728,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -88750,15 +88750,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:anab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88772,15 +88772,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -88794,15 +88794,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -88816,15 +88816,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -88838,15 +88838,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -88860,15 +88860,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88882,15 +88882,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88904,15 +88904,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -88926,15 +88926,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88948,15 +88948,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88970,15 +88970,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -88992,15 +88992,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89014,15 +89014,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -89036,15 +89036,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:imft AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -89058,15 +89058,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89080,15 +89080,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89102,15 +89102,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -89124,15 +89124,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89146,15 +89146,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -89168,15 +89168,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -89190,15 +89190,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -89212,15 +89212,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -89234,15 +89234,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -89256,15 +89256,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -89278,15 +89278,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -89300,41 +89300,41 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' emst-PART_OF-fngs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -89348,15 +89348,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89370,15 +89370,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89392,15 +89392,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89414,15 +89414,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -89436,15 +89436,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -89458,41 +89458,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRECEDES-comd-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -89506,119 +89506,119 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-INHIBITS-hops,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-INTERACTS_WITH-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89632,15 +89632,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -89654,15 +89654,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89676,67 +89676,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nnon,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb-CAUSES-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89750,15 +89750,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -89772,15 +89772,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -89794,15 +89794,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -89816,15 +89816,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89838,15 +89838,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -89860,15 +89860,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -89882,15 +89882,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -89904,15 +89904,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -89926,15 +89926,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -89948,15 +89948,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -89970,41 +89970,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:hops + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90018,41 +90018,41 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90066,15 +90066,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90088,15 +90088,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90110,15 +90110,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -90132,15 +90132,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nusq + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -90154,15 +90154,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90176,15 +90176,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90198,15 +90198,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90220,41 +90220,41 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90268,67 +90268,67 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-emst: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -90342,41 +90342,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nnon AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-horm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90390,15 +90390,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90412,15 +90412,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -90434,15 +90434,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -90456,15 +90456,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -90478,15 +90478,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -90500,15 +90500,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -90522,15 +90522,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -90544,15 +90544,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -90566,15 +90566,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -90588,15 +90588,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90610,15 +90610,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90632,15 +90632,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -90654,15 +90654,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -90676,15 +90676,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90698,15 +90698,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:comd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90720,15 +90720,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90742,15 +90742,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90764,15 +90764,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:neop AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -90786,15 +90786,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -90808,41 +90808,41 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' eico-PREDISPOSES-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90856,15 +90856,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -90878,15 +90878,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -90900,15 +90900,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -90922,15 +90922,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -90944,41 +90944,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-DISRUPTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -90992,15 +90992,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -91014,15 +91014,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -91036,15 +91036,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91058,15 +91058,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91080,15 +91080,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91102,15 +91102,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91124,41 +91124,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -91172,15 +91172,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -91194,41 +91194,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91242,15 +91242,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91264,15 +91264,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -91286,15 +91286,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:fngs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -91308,15 +91308,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91330,41 +91330,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:opco AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91378,15 +91378,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -91400,15 +91400,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -91422,15 +91422,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nnon + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91444,41 +91444,41 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-COEXISTS_WITH-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91492,15 +91492,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -91514,15 +91514,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -91536,15 +91536,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91558,67 +91558,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-ASSOCIATED_WITH-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91632,15 +91632,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91654,15 +91654,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:elii + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91676,15 +91676,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91698,15 +91698,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91720,67 +91720,67 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AUGMENTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PREVENTS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -91794,15 +91794,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -91816,15 +91816,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91838,15 +91838,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:acab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91860,15 +91860,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bodm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -91882,15 +91882,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -91904,15 +91904,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -91926,15 +91926,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -91948,15 +91948,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -91970,15 +91970,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -91992,41 +91992,41 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INTERACTS_WITH-irda-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92040,15 +92040,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -92062,15 +92062,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -92084,15 +92084,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -92106,15 +92106,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92128,15 +92128,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -92150,67 +92150,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-sosy,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' sosy-MANIFESTATION_OF-orgf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -92224,15 +92224,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -92246,15 +92246,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:OCCURS_IN AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:OCCURS_IN AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -92268,15 +92268,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -92290,15 +92290,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92312,41 +92312,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-PART_OF-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -92360,15 +92360,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -92382,15 +92382,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -92404,67 +92404,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-AUGMENTS-moft,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm,ncbigene-DISRUPTS-mobd,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -92478,41 +92478,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRODUCES-nsba: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92526,15 +92526,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -92548,15 +92548,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -92570,67 +92570,67 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' anab-COMPLICATES-anab-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:anab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -92644,15 +92644,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -92666,15 +92666,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92688,67 +92688,67 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-emst: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' anab-MANIFESTATION_OF-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:anab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -92762,15 +92762,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:comd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -92784,15 +92784,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -92806,15 +92806,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -92828,15 +92828,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92850,15 +92850,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -92872,15 +92872,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -92894,15 +92894,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -92916,15 +92916,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92938,15 +92938,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92960,15 +92960,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -92982,15 +92982,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93004,15 +93004,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93026,15 +93026,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93048,15 +93048,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nsba AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93070,41 +93070,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-CAUSES-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93118,15 +93118,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93140,15 +93140,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93162,67 +93162,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm,ncbigene-INTERACTS_WITH-aapp,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -93236,15 +93236,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93258,15 +93258,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93280,15 +93280,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93302,15 +93302,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93324,15 +93324,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93346,15 +93346,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -93368,15 +93368,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -93390,15 +93390,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93412,15 +93412,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93434,15 +93434,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93456,67 +93456,67 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-DISRUPTS-inpo,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -93530,15 +93530,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -93552,15 +93552,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93574,15 +93574,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -93596,15 +93596,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -93618,15 +93618,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -93640,15 +93640,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -93662,67 +93662,67 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-same_as-aapp,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -93736,15 +93736,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -93758,15 +93758,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -93780,15 +93780,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93802,15 +93802,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -93824,15 +93824,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -93846,15 +93846,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -93868,15 +93868,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -93890,15 +93890,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -93912,15 +93912,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -93934,15 +93934,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:virs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -93956,15 +93956,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -93978,15 +93978,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -94000,41 +94000,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' acab-AFFECTS-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:acab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -94048,15 +94048,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94070,15 +94070,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94092,15 +94092,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bact + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -94114,15 +94114,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -94136,15 +94136,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94158,15 +94158,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94180,41 +94180,41 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INTERACTS_WITH-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94228,15 +94228,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:topp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -94250,15 +94250,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:diap + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -94272,41 +94272,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:aapp AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp-PRODUCES-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -94320,15 +94320,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -94342,15 +94342,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94364,15 +94364,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94386,15 +94386,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94408,15 +94408,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94430,41 +94430,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:lipd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PART_OF-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94478,15 +94478,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -94500,15 +94500,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -94522,15 +94522,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94544,15 +94544,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94566,15 +94566,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94588,41 +94588,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' rcpt-ASSOCIATED_WITH-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -94636,15 +94636,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -94658,15 +94658,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -94680,15 +94680,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94702,15 +94702,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -94724,145 +94724,145 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nusq,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt,umls-INHIBITS-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu,ncbigene-INHIBITS-gngm,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' elii-DISRUPTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94876,15 +94876,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -94898,15 +94898,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:irda + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -94920,15 +94920,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -94942,15 +94942,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -94964,15 +94964,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -94986,15 +94986,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -95008,41 +95008,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -95056,15 +95056,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -95078,67 +95078,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs,ncbigene-STIMULATES-gngm,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celf-AFFECTS-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -95152,15 +95152,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -95174,15 +95174,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95196,15 +95196,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95218,15 +95218,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -95240,15 +95240,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:inch + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95262,15 +95262,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -95284,15 +95284,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -95306,67 +95306,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-opco: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:opco AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-eico: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95380,15 +95380,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95402,15 +95402,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -95424,15 +95424,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -95446,15 +95446,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95468,41 +95468,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95516,15 +95516,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -95538,41 +95538,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -95586,15 +95586,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -95608,15 +95608,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:strd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95630,41 +95630,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-TREATS-patf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95678,15 +95678,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95700,15 +95700,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -95722,15 +95722,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -95744,15 +95744,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -95766,15 +95766,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -95788,15 +95788,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95810,15 +95810,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95832,15 +95832,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -95854,15 +95854,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -95876,15 +95876,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:strd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95898,41 +95898,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-CAUSES-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -95946,15 +95946,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -95968,15 +95968,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -95990,15 +95990,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:enzy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -96012,41 +96012,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-ASSOCIATED_WITH-cgab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96060,15 +96060,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96082,15 +96082,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96104,15 +96104,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96126,15 +96126,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96148,41 +96148,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' ortf-AFFECTS-virs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -96196,15 +96196,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96218,15 +96218,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -96240,15 +96240,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -96262,41 +96262,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' comd-PRODUCES-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96310,15 +96310,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96332,15 +96332,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96354,15 +96354,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -96376,15 +96376,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96398,15 +96398,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96420,41 +96420,41 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lbtr-MANIFESTATION_OF-celf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:celf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -96468,15 +96468,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -96490,67 +96490,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:orgf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-orgf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-INTERACTS_WITH-phsu,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -96564,15 +96564,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -96586,15 +96586,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inpo AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -96608,15 +96608,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -96630,15 +96630,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:eico + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96652,15 +96652,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96674,15 +96674,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96696,15 +96696,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -96718,15 +96718,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -96740,15 +96740,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -96762,15 +96762,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96784,15 +96784,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -96806,15 +96806,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -96828,15 +96828,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96850,15 +96850,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -96872,15 +96872,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -96894,15 +96894,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -96916,15 +96916,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -96938,15 +96938,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:phsu AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -96960,15 +96960,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -96982,15 +96982,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -97004,15 +97004,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -97026,15 +97026,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97048,15 +97048,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -97070,15 +97070,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -97092,15 +97092,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:celc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -97114,15 +97114,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -97136,15 +97136,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97158,15 +97158,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orgf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -97180,41 +97180,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-CONVERTS_TO-imft,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -97228,15 +97228,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -97250,67 +97250,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' hops-STIMULATES-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97324,67 +97324,67 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' irda,umls-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PRECEDES-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -97398,15 +97398,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:dsyn AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -97420,15 +97420,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -97442,15 +97442,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -97464,15 +97464,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -97486,15 +97486,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97508,15 +97508,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97530,15 +97530,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -97552,15 +97552,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -97574,15 +97574,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -97596,15 +97596,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97618,41 +97618,41 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-COEXISTS_WITH-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -97666,15 +97666,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97688,15 +97688,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97710,15 +97710,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97732,15 +97732,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -97754,15 +97754,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -97776,15 +97776,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:eico + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97798,15 +97798,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -97820,15 +97820,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -97842,15 +97842,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -97864,15 +97864,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -97886,15 +97886,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -97908,15 +97908,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -97930,67 +97930,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-AUGMENTS-biof,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-PREDISPOSES-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:antb AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98004,15 +98004,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98026,15 +98026,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -98048,93 +98048,93 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-AUGMENTS-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-enzy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-CONVERTS_TO-nsba: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98148,67 +98148,67 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-INTERACTS_WITH-opco,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:opco + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98222,15 +98222,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98244,67 +98244,67 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:rcpt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-CAUSES-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -98318,67 +98318,67 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-celf-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ADMINISTERED_TO-aggp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98392,15 +98392,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:antb + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98414,67 +98414,67 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp,umls-STIMULATES-horm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:horm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' topp-COMPLICATES-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -98488,15 +98488,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -98510,15 +98510,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -98532,15 +98532,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -98554,15 +98554,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98576,15 +98576,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -98598,15 +98598,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:biof - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:biof AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -98620,15 +98620,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98642,15 +98642,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -98664,41 +98664,41 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-PREVENTS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -98712,15 +98712,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -98734,15 +98734,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -98756,15 +98756,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98778,15 +98778,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -98800,15 +98800,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -98822,15 +98822,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -98844,15 +98844,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:bpoc AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -98866,15 +98866,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -98888,15 +98888,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -98910,15 +98910,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -98932,15 +98932,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -98954,15 +98954,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -98976,15 +98976,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -98998,15 +98998,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99020,15 +99020,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:clnd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Drug @@ -99042,15 +99042,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -99064,15 +99064,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -99086,15 +99086,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99108,15 +99108,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -99130,15 +99130,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -99152,15 +99152,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99174,15 +99174,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -99196,15 +99196,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -99218,93 +99218,93 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-STIMULATES-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-STIMULATES-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' comd-AFFECTS-virs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99318,15 +99318,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99340,15 +99340,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99362,15 +99362,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99384,15 +99384,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -99406,15 +99406,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99428,15 +99428,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -99450,41 +99450,41 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-comd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99498,15 +99498,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99520,41 +99520,41 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -99568,15 +99568,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -99590,15 +99590,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99612,15 +99612,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99634,41 +99634,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm-PRECEDES-topp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -99682,15 +99682,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99704,41 +99704,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-nnon: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99752,15 +99752,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99774,93 +99774,93 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-STIMULATES-bacs,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' virs,umls-LOCATION_OF-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -99874,15 +99874,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99896,15 +99896,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -99918,15 +99918,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -99940,15 +99940,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -99962,15 +99962,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -99984,15 +99984,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -100006,15 +100006,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100028,15 +100028,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100050,15 +100050,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:drdd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:drdd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -100072,15 +100072,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100094,15 +100094,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:diap AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -100116,15 +100116,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -100138,15 +100138,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -100160,15 +100160,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -100182,15 +100182,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100204,15 +100204,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -100226,15 +100226,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:patf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -100248,15 +100248,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -100270,15 +100270,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100292,15 +100292,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -100314,15 +100314,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -100336,15 +100336,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -100358,15 +100358,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -100380,15 +100380,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100402,41 +100402,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-imft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:imft + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -100450,15 +100450,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -100472,67 +100472,67 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu,ncbigene-INHIBITS-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-COEXISTS_WITH-hops: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:hops AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100546,15 +100546,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -100568,15 +100568,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100590,15 +100590,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -100612,15 +100612,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100634,15 +100634,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100656,15 +100656,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -100678,15 +100678,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100700,15 +100700,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100722,15 +100722,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -100744,67 +100744,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-rcpt,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' opco-PREDISPOSES-dsyn-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:opco AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100818,15 +100818,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:opco AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100840,15 +100840,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -100862,15 +100862,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -100884,15 +100884,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -100906,15 +100906,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100928,15 +100928,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -100950,15 +100950,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -100972,93 +100972,93 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-nusq-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' opco-STIMULATES-hops-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:opco AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -101072,41 +101072,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bact-PRODUCES-orch: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101120,15 +101120,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101142,15 +101142,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -101164,15 +101164,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101186,15 +101186,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -101208,41 +101208,41 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-INTERACTS_WITH-bacs,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:bacs + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -101256,15 +101256,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -101278,15 +101278,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -101300,15 +101300,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:anst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -101322,93 +101322,93 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INHIBITS-imft,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs,ncbigene-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' medd-CAUSES-cgab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -101422,15 +101422,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101444,15 +101444,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101466,15 +101466,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -101488,41 +101488,41 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' opco,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101536,15 +101536,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -101558,15 +101558,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -101580,15 +101580,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:gngm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -101602,15 +101602,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101624,41 +101624,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-AFFECTS-acab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -101672,15 +101672,15 @@ components: inputs: - id: UMLS semantic: OrganismAttribute - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:ortf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -101694,15 +101694,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -101716,15 +101716,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:orch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101738,15 +101738,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -101760,15 +101760,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -101782,41 +101782,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-bact: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -101830,15 +101830,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -101852,15 +101852,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101874,15 +101874,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -101896,15 +101896,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -101918,67 +101918,67 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INHIBITS-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' inch-PRECEDES-topp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -101992,15 +101992,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:inch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102014,15 +102014,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:emst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:emst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -102036,41 +102036,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' enzy,umls-COEXISTS_WITH-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -102084,15 +102084,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102106,15 +102106,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:moft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:moft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -102128,15 +102128,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102150,41 +102150,41 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PRODUCES-gngm-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:tisu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -102198,15 +102198,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:bpoc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -102220,15 +102220,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102242,15 +102242,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102264,15 +102264,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -102286,15 +102286,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102308,15 +102308,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:aapp + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -102330,15 +102330,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsf + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -102352,15 +102352,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102374,15 +102374,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -102396,15 +102396,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -102418,15 +102418,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102440,15 +102440,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:cgab + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102462,41 +102462,41 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' orgf,umls-PRODUCES-horm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -102510,15 +102510,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -102532,15 +102532,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102554,15 +102554,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -102576,15 +102576,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -102598,15 +102598,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102620,15 +102620,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:fndg + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -102642,41 +102642,41 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-moft: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:moft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:moft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: MolecularActivity @@ -102690,15 +102690,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102712,15 +102712,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -102734,41 +102734,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' phsu,ncbigene-ASSOCIATED_WITH-dsyn,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -102782,15 +102782,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:diap - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:diap AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -102804,15 +102804,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:topp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -102826,15 +102826,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -102848,15 +102848,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -102870,15 +102870,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:eico AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102892,15 +102892,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -102914,41 +102914,41 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu,ncbigene-CAUSES-celf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -102962,15 +102962,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -102984,15 +102984,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103006,15 +103006,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:elii + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103028,15 +103028,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103050,15 +103050,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103072,15 +103072,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103094,15 +103094,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103116,15 +103116,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103138,41 +103138,41 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-phsu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:phsu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103186,15 +103186,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:cgab AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103208,15 +103208,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103230,15 +103230,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -103252,15 +103252,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -103274,15 +103274,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -103296,15 +103296,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -103318,15 +103318,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103340,15 +103340,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103362,15 +103362,15 @@ components: inputs: - id: UMLS semantic: Food - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103384,15 +103384,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -103406,15 +103406,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -103428,15 +103428,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103450,15 +103450,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -103472,15 +103472,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:comd - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:comd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103494,15 +103494,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -103516,15 +103516,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103538,15 +103538,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103560,15 +103560,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103582,15 +103582,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103604,15 +103604,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103626,15 +103626,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:virs + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Virus @@ -103648,15 +103648,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:fngs + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -103670,15 +103670,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103692,15 +103692,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -103714,15 +103714,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103736,15 +103736,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -103758,15 +103758,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:dsyn + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103780,15 +103780,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -103802,15 +103802,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -103824,67 +103824,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:irda AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-irda-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,umls-COEXISTS_WITH-bacs,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -103898,93 +103898,93 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-cell: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-CAUSES-anab,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -103998,41 +103998,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:enzy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nsba,ncbigene-DISRUPTS-ortf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -104046,15 +104046,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:vita AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104068,15 +104068,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104090,15 +104090,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104112,15 +104112,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -104134,15 +104134,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -104156,15 +104156,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104178,15 +104178,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104200,15 +104200,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -104222,15 +104222,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:celf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -104244,15 +104244,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -104266,15 +104266,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -104288,15 +104288,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:cell AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -104310,15 +104310,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104332,15 +104332,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:lipd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104354,15 +104354,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:mobd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -104376,41 +104376,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-neop: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -104424,41 +104424,41 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-PREVENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104472,41 +104472,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp,ncbigene-AFFECTS-anab,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -104520,15 +104520,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -104542,15 +104542,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -104564,15 +104564,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -104586,15 +104586,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104608,15 +104608,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104630,15 +104630,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:opco AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104652,15 +104652,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -104674,15 +104674,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -104696,15 +104696,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -104718,15 +104718,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -104740,15 +104740,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -104762,67 +104762,67 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm,ncbigene-AUGMENTS-biof,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-PRECEDES-topp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:antb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104836,15 +104836,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -104858,15 +104858,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104880,15 +104880,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -104902,15 +104902,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -104924,15 +104924,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:nsba + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104946,41 +104946,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' hops-AFFECTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -104994,15 +104994,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105016,93 +105016,93 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nsba AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-STIMULATES-nusq,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-STIMULATES-nusq,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' strd-AFFECTS-biof-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105116,15 +105116,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:rcpt + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -105138,15 +105138,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bodm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -105160,67 +105160,67 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-neop-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-enzy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -105234,41 +105234,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-PART_OF-fngs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105282,15 +105282,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -105304,15 +105304,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -105326,15 +105326,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105348,15 +105348,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:nnon AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105370,15 +105370,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:cgab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105392,15 +105392,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:elii AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105414,41 +105414,41 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp,ncbigene-PRODUCES-hops,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105462,15 +105462,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105484,41 +105484,41 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:enzy AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm,ncbigene-INTERACTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -105532,15 +105532,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105554,41 +105554,41 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-AFFECTS-patf: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -105602,15 +105602,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105624,15 +105624,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105646,15 +105646,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105668,15 +105668,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105690,15 +105690,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105712,15 +105712,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:hops + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105734,15 +105734,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:nnon AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105756,15 +105756,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105778,15 +105778,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105800,15 +105800,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -105822,15 +105822,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -105844,15 +105844,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND object.semantic_type_abbreviation:emod + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -105866,15 +105866,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ADMINISTERED_TO AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -105888,15 +105888,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:phsu + AND _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -105910,15 +105910,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:opco + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105932,15 +105932,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105954,15 +105954,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -105976,15 +105976,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -105998,15 +105998,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:antb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106020,15 +106020,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nsba AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106042,67 +106042,67 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INHIBITS-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' strd-INTERACTS_WITH-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106116,15 +106116,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:medd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:medd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -106138,15 +106138,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106160,41 +106160,41 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-LOCATION_OF-bodm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bodm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bodm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -106208,15 +106208,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bdsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -106230,15 +106230,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106252,15 +106252,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -106274,15 +106274,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -106296,15 +106296,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -106318,15 +106318,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106340,15 +106340,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106362,41 +106362,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-PART_OF-cell-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106410,15 +106410,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -106432,67 +106432,67 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-comd-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREVENTS-emod: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:emod AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -106506,15 +106506,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106528,15 +106528,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:inpo + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -106550,15 +106550,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -106572,15 +106572,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:ortf AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -106594,15 +106594,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:mobd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -106616,145 +106616,145 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:fndg AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-fndg-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-carb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm,ncbigene-STIMULATES-gngm,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:horm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' carb-INHIBITS-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-antb: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106768,41 +106768,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft-AFFECTS-tisu: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -106816,15 +106816,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:imft AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -106838,15 +106838,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -106860,15 +106860,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -106882,15 +106882,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -106904,93 +106904,93 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-rcpt: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-medd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:medd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:medd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -107004,15 +107004,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:topp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -107026,15 +107026,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:patf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -107048,15 +107048,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -107070,15 +107070,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:carb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107092,15 +107092,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107114,41 +107114,41 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bacs,umls-CONVERTS_TO-gngm,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:gngm AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -107162,15 +107162,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107184,15 +107184,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107206,15 +107206,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:irda + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -107228,15 +107228,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -107250,15 +107250,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107272,41 +107272,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:hops - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:hops AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-PRODUCES-bdsu,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -107320,67 +107320,67 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' hops-CONVERTS_TO-imft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:hops AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107394,41 +107394,41 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PRECEDES-topp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -107442,15 +107442,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:imft AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -107464,41 +107464,41 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-PART_OF-bact-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107512,15 +107512,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -107534,15 +107534,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:gngm - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:gngm AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -107556,41 +107556,41 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PREVENTS-inpo: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -107604,15 +107604,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:dsyn AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -107626,15 +107626,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107648,41 +107648,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:phsu AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lbtr-MANIFESTATION_OF-dsyn: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:dsyn + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -107696,15 +107696,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:lbtr + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -107718,15 +107718,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:horm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107740,15 +107740,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -107762,15 +107762,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -107784,15 +107784,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -107806,41 +107806,41 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:elii AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AFFECTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107854,15 +107854,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -107876,15 +107876,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:tisu AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -107898,15 +107898,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -107920,15 +107920,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:orch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -107942,15 +107942,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:neop - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:neop AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -107964,15 +107964,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -107986,15 +107986,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108008,15 +108008,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:neop + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -108030,15 +108030,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:gngm AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -108052,15 +108052,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -108074,15 +108074,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:cell AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -108096,15 +108096,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -108118,67 +108118,67 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft,umls-INHIBITS-aapp,ncbigene: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' elii-AFFECTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108192,15 +108192,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:drdd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:drdd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -108214,15 +108214,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -108236,15 +108236,15 @@ components: inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:mobd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:mobd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -108258,15 +108258,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108280,15 +108280,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:enzy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -108302,15 +108302,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:celc AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -108324,15 +108324,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:lipd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108346,15 +108346,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108368,15 +108368,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -108390,15 +108390,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108412,15 +108412,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -108434,15 +108434,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:aapp + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -108456,15 +108456,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:vita - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:vita AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108478,15 +108478,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -108500,15 +108500,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108522,15 +108522,15 @@ components: inputs: - id: UMLS semantic: GrossAnatomicalStructure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:rcpt AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -108544,41 +108544,41 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm,ncbigene-AFFECTS-orgf,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -108592,41 +108592,41 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-aapp: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -108640,15 +108640,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:bacs AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108662,15 +108662,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -108684,15 +108684,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:emod + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -108706,15 +108706,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108728,15 +108728,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108750,15 +108750,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:imft AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -108772,15 +108772,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -108794,41 +108794,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-DISRUPTS-anab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -108842,15 +108842,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:imft AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -108864,15 +108864,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108886,15 +108886,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:tisu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:tisu AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -108908,15 +108908,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:horm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108930,15 +108930,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -108952,15 +108952,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:emst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -108974,15 +108974,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:hops - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:hops AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -108996,15 +108996,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -109018,15 +109018,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:vita - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:vita AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109040,67 +109040,67 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:bacs AND _exists_:object.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nnon-STIMULATES-bacs-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND subject.semantic_type_abbreviation:nnon AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-lipd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:lipd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109114,15 +109114,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -109136,15 +109136,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:fngs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Fungus @@ -109158,15 +109158,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:enzy AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -109180,15 +109180,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:bacs - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:bacs AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109202,15 +109202,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109224,15 +109224,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:vita - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:vita AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109246,15 +109246,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND object.semantic_type_abbreviation:comd - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -109268,15 +109268,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -109290,15 +109290,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -109312,15 +109312,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRECEDES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRECEDES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -109334,15 +109334,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -109356,15 +109356,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREDISPOSES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -109378,15 +109378,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:orch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109400,15 +109400,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -109422,15 +109422,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:nusq AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -109444,15 +109444,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -109466,15 +109466,15 @@ components: inputs: - id: UMLS semantic: Virus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:lipd AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109488,15 +109488,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND subject.semantic_type_abbreviation:phsu AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109510,15 +109510,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -109532,15 +109532,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:opco - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:opco AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109554,15 +109554,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:orgf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -109576,15 +109576,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:inpo AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -109598,15 +109598,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND subject.semantic_type_abbreviation:diap - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND subject.semantic_type_abbreviation:diap AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -109620,15 +109620,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109642,15 +109642,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:inch AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109664,15 +109664,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND object.semantic_type_abbreviation:sosy + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -109686,15 +109686,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:rcpt + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -109708,15 +109708,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109730,15 +109730,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:opco AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109752,67 +109752,67 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:aapp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INHIBITS-aapp-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-moft-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109826,67 +109826,67 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:nnon AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-COEXISTS_WITH-cgab: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -109900,15 +109900,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:horm + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -109922,67 +109922,67 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:rcpt AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INHIBITS-rcpt-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-irda: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Plant - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:irda AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -109996,15 +109996,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:plnt AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Plant @@ -110018,41 +110018,41 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:lipd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-PREVENTS-neop,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -110066,15 +110066,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:aapp AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -110088,15 +110088,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:aapp AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -110110,15 +110110,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs - AND _exists_:object.ncbigene AND pmid_count:>3 AND subject.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bacs AND + _exists_:object.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -110132,41 +110132,41 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AUGMENTS AND subject.semantic_type_abbreviation:bacs AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' bact-INTERACTS_WITH-gngm: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:gngm + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Gene @@ -110180,15 +110180,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bact + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Bacterium @@ -110202,15 +110202,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110224,15 +110224,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:strd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:strd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110246,15 +110246,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110268,15 +110268,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -110290,15 +110290,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid @@ -110312,15 +110312,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:phsu + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -110334,15 +110334,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:elii - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:elii AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110356,15 +110356,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110378,41 +110378,41 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:opco - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:opco AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-mobd: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:mobd + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -110426,15 +110426,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110448,15 +110448,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:gngm AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -110470,15 +110470,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND object.semantic_type_abbreviation:aggp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Cohort @@ -110492,15 +110492,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:celc - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:celc AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: CellularComponent @@ -110514,15 +110514,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PRODUCES AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PRODUCES AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110536,15 +110536,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND object.semantic_type_abbreviation:cell AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -110558,15 +110558,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PROCESS_OF AND subject.semantic_type_abbreviation:celf AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -110580,15 +110580,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -110602,15 +110602,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110624,15 +110624,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -110646,15 +110646,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:anst - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:anst AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -110668,15 +110668,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110690,15 +110690,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:ASSOCIATED_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -110712,15 +110712,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:strd AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110734,15 +110734,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -110756,15 +110756,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -110778,15 +110778,15 @@ components: inputs: - id: UMLS semantic: Drug - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:acab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -110800,67 +110800,67 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:nusq AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' aapp,ncbigene-INHIBITS-nusq,umls-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs,ncbigene-INTERACTS_WITH-aapp,ncbigene-rev: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.ncbigene')| dump - }}, "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:bacs + AND _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -110874,15 +110874,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:celf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -110896,15 +110896,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:biof - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:biof AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Phenomenon @@ -110918,15 +110918,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -110940,67 +110940,67 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' gngm,ncbigene-INHIBITS-eico,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:eico AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:sosy AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -111014,15 +111014,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:fndg AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature @@ -111036,15 +111036,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:patf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PathologicalProcess @@ -111058,15 +111058,15 @@ components: inputs: - id: UMLS semantic: PathologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -111080,15 +111080,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:nsba + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111102,15 +111102,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:orgf AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -111124,15 +111124,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:topp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:topp AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -111146,15 +111146,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:inch + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111168,15 +111168,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:antb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111190,15 +111190,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:horm AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111212,15 +111212,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COMPLICATES AND subject.semantic_type_abbreviation:orch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:orch AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111234,41 +111234,41 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:STIMULATES AND object.semantic_type_abbreviation:nnon - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:STIMULATES AND object.semantic_type_abbreviation:nnon AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: increased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-CAUSES-sosy: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:sosy - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:sosy AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhenotypicFeature @@ -111282,15 +111282,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -111304,15 +111304,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:orch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:orch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111326,15 +111326,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:medd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Device @@ -111348,15 +111348,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND object.semantic_type_abbreviation:mobd - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -111370,15 +111370,15 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -111392,15 +111392,15 @@ components: inputs: - id: UMLS semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111414,15 +111414,15 @@ components: inputs: - id: UMLS semantic: MolecularActivity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111436,15 +111436,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:carb AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111458,15 +111458,15 @@ components: inputs: - id: UMLS semantic: Protein - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:antb + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111480,15 +111480,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:inch - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:inch AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111502,15 +111502,15 @@ components: inputs: - id: UMLS semantic: Phenomenon - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:MANIFESTATION_OF AND object.semantic_type_abbreviation:phsf + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -111524,15 +111524,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -111546,15 +111546,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:anst AND + _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: AnatomicalEntity @@ -111568,15 +111568,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PREVENTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111590,15 +111590,15 @@ components: inputs: - id: UMLS semantic: Cohort - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:emst - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:emst AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: GrossAnatomicalStructure @@ -111612,15 +111612,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: PhysiologicalProcess @@ -111634,15 +111634,15 @@ components: inputs: - id: UMLS semantic: PhysiologicalProcess - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nusq - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nusq AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -111656,15 +111656,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -111678,15 +111678,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy - AND _exists_:subject.umls AND pmid_count:>3 AND object.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.ncbigene parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:enzy + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -111700,15 +111700,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:anab AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -111722,15 +111722,15 @@ components: inputs: - id: UMLS semantic: Device - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:USES AND object.semantic_type_abbreviation:carb - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:USES AND object.semantic_type_abbreviation:carb AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111744,15 +111744,15 @@ components: inputs: - id: UMLS semantic: CellularComponent - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:nsba AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111766,15 +111766,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CAUSES AND object.semantic_type_abbreviation:cgab - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -111788,67 +111788,67 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND object.semantic_type_abbreviation:inch - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND object.semantic_type_abbreviation:inch AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule predicate: affects + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INHIBITS-inch-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INHIBITS AND subject.semantic_type_abbreviation:irda - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INHIBITS AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: DiagnosticAid predicate: affected_by + source: "infores:semmeddb" + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' horm,ncbigene-TREATS-anab,umls: - supportBatch: True useTemplating: True inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semantic_type_abbreviation:anab - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Disease @@ -111862,15 +111862,15 @@ components: inputs: - id: UMLS semantic: AnatomicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:LOCATION_OF AND object.semantic_type_abbreviation:vita - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:vita AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111884,15 +111884,15 @@ components: inputs: - id: UMLS semantic: Fungus - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:rcpt AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Protein @@ -111906,15 +111906,15 @@ components: inputs: - id: UMLS semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:strd + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111928,15 +111928,15 @@ components: inputs: - id: UMLS semantic: Bacterium - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:PART_OF AND subject.semantic_type_abbreviation:carb - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:carb AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111950,15 +111950,15 @@ components: inputs: - id: UMLS semantic: DiagnosticAid - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:phsu AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111972,15 +111972,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:eico AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -111994,15 +111994,15 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:DISRUPTS AND subject.semantic_type_abbreviation:eico AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule @@ -112016,15 +112016,15 @@ components: inputs: - id: NCBIGene semantic: Gene - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq - AND _exists_:object.umls AND pmid_count:>3 AND subject.ncbigene')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: subject.ncbigene parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND object.semantic_type_abbreviation:nusq AND + _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: NucleicAcidEntity @@ -112038,15 +112038,15 @@ components: inputs: - id: UMLS semantic: NucleicAcidEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm - AND _exists_:subject.ncbigene AND pmid_count:>3 AND object.umls')| dump }}, - "scopes": []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:CONVERTS_TO AND subject.semantic_type_abbreviation:gngm AND + _exists_:subject.ncbigene AND pmid_count:>3 outputs: - id: NCBIGene semantic: Gene @@ -112060,15 +112060,15 @@ components: inputs: - id: UMLS semantic: BiologicalEntity - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND object.semantic_type_abbreviation:cell + AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS semantic: Cell @@ -112082,15 +112082,15 @@ components: inputs: - id: UMLS semantic: Cell - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:INTERACTS_WITH AND subject.semantic_type_abbreviation:imft + AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS semantic: BiologicalEntity @@ -112104,15 +112104,15 @@ components: inputs: - id: UMLS semantic: Polypeptide - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND object.semantic_type_abbreviation:topp - AND _exists_:object.umls AND pmid_count:>3 AND subject.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: subject.umls parameters: fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND object.semantic_type_abbreviation:topp AND _exists_:object.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Procedure @@ -112126,15 +112126,15 @@ components: inputs: - id: UMLS semantic: Procedure - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:same_as AND subject.semantic_type_abbreviation:aapp - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:same_as AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: Polypeptide @@ -112148,15 +112148,15 @@ components: inputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:AFFECTS AND subject.semantic_type_abbreviation:elii - AND _exists_:subject.umls AND pmid_count:>3 AND object.umls')| dump }}, "scopes": - []} + body: + q: '{{ queryInputs }}' + scopes: object.umls parameters: fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:elii AND _exists_:subject.umls + AND pmid_count:>3 outputs: - id: UMLS semantic: SmallMolecule diff --git a/suppkg/suppkg.yaml b/suppkg/suppkg.yaml index e7b64911..66234d9c 100644 --- a/suppkg/suppkg.yaml +++ b/suppkg/suppkg.yaml @@ -585,17 +585,21 @@ components: inputs: - id: UMLS semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND object.semtypes:(acab OR anab OR cgab OR comd OR dsyn OR mobd OR neop) - AND subject.umls')| dump }}, "scopes": []} + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.umls outputs: - id: UMLS semantic: Disease parameters: fields: object.umls,relation.pmid,relation.sentence,subject.name,object.name size: 1000 + filter: >- + subject.semtypes:(aapp OR antb OR bacs OR dsp OR food OR inch OR orch OR phsu OR vita) AND + (NOT subject.semtypes:(bact OR gngm OR plnt)) AND + predicate:TREATS AND + object.semtypes:(acab OR anab OR cgab OR comd OR dsyn OR mobd OR neop) predicate: treats source: "infores:suppkg" # no infores for suppkg yet response_mapping: @@ -609,18 +613,21 @@ components: inputs: - id: UMLS semantic: Disease - requestBodyType: object requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('predicate:TREATS AND (NOT subject.semtypes:(bact OR gngm OR plnt)) - AND subject.semtypes:(aapp OR antb OR bacs OR dsp OR food OR inch OR orch OR phsu OR vita) - AND object.umls')| dump }}, "scopes": []} + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.umls outputs: - id: UMLS semantic: SmallMolecule parameters: fields: subject.umls,relation,subject.name,object.name size: 1000 + filter: >- + subject.semtypes:(aapp OR antb OR bacs OR dsp OR food OR inch OR orch OR phsu OR vita) AND + (NOT subject.semtypes:(bact OR gngm OR plnt)) AND + predicate:TREATS AND + object.semtypes:(acab OR anab OR cgab OR comd OR dsyn OR mobd OR neop) predicate: treated_by source: "infores:suppkg" # no infores for suppkg yet response_mapping: diff --git a/text_mining/smartapi.yaml b/text_mining/smartapi.yaml index 98c42dc4..616ca404 100644 --- a/text_mining/smartapi.yaml +++ b/text_mining/smartapi.yaml @@ -611,7 +611,6 @@ components: ## - MONDO: Disease ## - HP: PhenotypicFeaure ## - UniProtKB: Gene - ## - currently we can't express _exists_ with this kind of query: useful for setting the output ## - currently, BTE handles prefix (MONDO / HP keep their prefixes, DRUGBANK / UniProtKB does not). ## in the future, could edit parser + queries to handle prefixes ## - joinSafe is only needed if the delimiter isn't a comma @@ -623,16 +622,14 @@ components: inputs: - id: DRUGBANK semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","treats"]') }} ], - "scopes": ["subject.DRUGBANK", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.DRUGBANK parameters: fields: object.MONDO,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:treats AND _exists_:object.MONDO outputs: - id: MONDO semantic: Disease @@ -650,16 +647,14 @@ components: inputs: - id: MONDO semantic: Disease - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","treats"]') }} ], - "scopes": ["object.MONDO", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: object.MONDO parameters: fields: subject.DRUGBANK,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:treats AND _exists_:object.MONDO outputs: - id: DRUGBANK semantic: SmallMolecule @@ -677,16 +672,14 @@ components: inputs: - id: DRUGBANK semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","treats"]') }} ], - "scopes": ["subject.DRUGBANK", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.DRUGBANK parameters: fields: object.HP,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:treats AND _exists_:object.HP outputs: - id: HP semantic: PhenotypicFeature @@ -704,16 +697,14 @@ components: inputs: - id: HP semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","treats"]') }} ], - "scopes": ["object.HP", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: object.HP parameters: fields: subject.DRUGBANK,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:treats AND _exists_:object.HP outputs: - id: DRUGBANK semantic: SmallMolecule @@ -730,16 +721,14 @@ components: inputs: - id: DRUGBANK semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","entity_positively_regulates_entity"]') }} ], - "scopes": ["subject.DRUGBANK", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.DRUGBANK parameters: fields: object.UniProtKB,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:entity_positively_regulates_entity AND _exists_:object.UniProtKB outputs: - id: UniProtKB semantic: Gene @@ -762,16 +751,14 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","entity_positively_regulates_entity"]') }} ], - "scopes": ["object.UniProtKB", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: object.UniProtKB parameters: fields: subject.DRUGBANK,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:entity_positively_regulates_entity AND _exists_:object.UniProtKB outputs: - id: DRUGBANK semantic: SmallMolecule @@ -793,16 +780,14 @@ components: inputs: - id: DRUGBANK semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","entity_negatively_regulates_entity"]') }} ], - "scopes": ["subject.DRUGBANK", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.DRUGBANK parameters: fields: object.UniProtKB,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:entity_negatively_regulates_entity AND _exists_:object.UniProtKB outputs: - id: UniProtKB semantic: Gene @@ -825,16 +810,14 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","entity_negatively_regulates_entity"]') }} ], - "scopes": ["object.UniProtKB", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: object.UniProtKB parameters: fields: subject.DRUGBANK,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:entity_negatively_regulates_entity AND _exists_:object.UniProtKB outputs: - id: DRUGBANK semantic: SmallMolecule @@ -856,16 +839,14 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","entity_positively_regulates_entity"]') }} ], - "scopes": ["subject.UniProtKB", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.UniProtKB parameters: fields: object.UniProtKB,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.UniProtKB AND association.edge_label:entity_positively_regulates_entity AND _exists_:object.UniProtKB outputs: - id: UniProtKB semantic: Gene @@ -886,16 +867,14 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","entity_positively_regulates_entity"]') }} ], - "scopes": ["object.UniProtKB", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: object.UniProtKB parameters: fields: subject.UniProtKB,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.UniProtKB AND association.edge_label:entity_positively_regulates_entity AND _exists_:object.UniProtKB outputs: - id: UniProtKB semantic: Gene @@ -916,16 +895,14 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","entity_negatively_regulates_entity"]') }} ], - "scopes": ["subject.UniProtKB", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.UniProtKB parameters: fields: object.UniProtKB,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.UniProtKB AND association.edge_label:entity_negatively_regulates_entity AND _exists_:object.UniProtKB outputs: - id: UniProtKB semantic: Gene @@ -946,16 +923,14 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","entity_negatively_regulates_entity"]') }} ], - "scopes": ["object.UniProtKB", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: object.UniProtKB parameters: fields: subject.UniProtKB,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.UniProtKB AND association.edge_label:entity_negatively_regulates_entity AND _exists_:object.UniProtKB outputs: - id: UniProtKB semantic: Gene @@ -976,16 +951,14 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","contributes_to"]') }} ], - "scopes": ["subject.UniProtKB", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.UniProtKB parameters: fields: object.MONDO,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.UniProtKB AND association.edge_label:contributes_to AND _exists_:object.MONDO outputs: - id: MONDO semantic: Disease @@ -1003,16 +976,14 @@ components: inputs: - id: MONDO semantic: Disease - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","contributes_to"]') }} ], - "scopes": ["object.MONDO", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: object.MONDO parameters: fields: subject.UniProtKB,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.UniProtKB AND association.edge_label:contributes_to AND _exists_:object.MONDO outputs: - id: UniProtKB semantic: Gene @@ -1029,16 +1000,14 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","contributes_to"]') }} ], - "scopes": ["subject.UniProtKB", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.UniProtKB parameters: fields: object.HP,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.UniProtKB AND association.edge_label:contributes_to AND _exists_:object.HP outputs: - id: HP semantic: PhenotypicFeature @@ -1056,16 +1025,14 @@ components: inputs: - id: HP semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","contributes_to"]') }} ], - "scopes": ["object.HP", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: object.HP parameters: fields: subject.UniProtKB,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.UniProtKB AND association.edge_label:contributes_to AND _exists_:object.HP outputs: - id: UniProtKB semantic: Gene @@ -1082,16 +1049,14 @@ components: inputs: - id: DRUGBANK semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","contributes_to"]') }} ], - "scopes": ["subject.DRUGBANK", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.DRUGBANK parameters: fields: object.HP,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:contributes_to AND _exists_:object.HP outputs: - id: HP semantic: PhenotypicFeature @@ -1105,16 +1070,14 @@ components: inputs: - id: HP semantic: PhenotypicFeature - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","contributes_to"]') }} ], - "scopes": ["object.HP", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: object.HP parameters: fields: subject.DRUGBANK,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:contributes_to AND _exists_:object.HP outputs: - id: DRUGBANK semantic: SmallMolecule @@ -1128,16 +1091,14 @@ components: inputs: - id: DRUGBANK semantic: SmallMolecule - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","contributes_to"]') }} ], - "scopes": ["subject.DRUGBANK", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: subject.DRUGBANK parameters: fields: object.MONDO,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:contributes_to AND _exists_:object.MONDO outputs: - id: MONDO semantic: Disease @@ -1151,16 +1112,14 @@ components: inputs: - id: MONDO semantic: Disease - requestBodyType: object requestBody: - body: >- - { - "q": [ {{ queryInputs | wrap( '["' , '","contributes_to"]') }} ], - "scopes": ["object.MONDO", "association.edge_label"] - } + body: + q: "{{ queryInputs }}" + scopes: object.MONDO parameters: fields: subject.DRUGBANK,association.edge_attributes,association.sources size: 1000 + filter: _exists_:subject.DRUGBANK AND association.edge_label:contributes_to AND _exists_:object.MONDO outputs: - id: DRUGBANK semantic: SmallMolecule diff --git a/ttd/smartapi.yaml b/ttd/smartapi.yaml index 2cf6445b..5a7b2f43 100644 --- a/ttd/smartapi.yaml +++ b/ttd/smartapi.yaml @@ -733,20 +733,17 @@ components: # # - qInput: "ICD11:CB03.4" ## Pulmonary fibrosis # # oneOutput: "CHEBI:144367" ## 3PO pubchem_treats_mondo: - ## https://biothings.transltr.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20association.predicate:%22biolink:treats%22%20AND%20_exists_:object.mondo + ## https://biothings.transltr.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22 ## 1604 records - supportBatch: true useTemplating: true ## flag to say templating is being used below inputs: - id: "PUBCHEM.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: ## no prefix - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:treats"]') }} ], - "scopes": ["subject.pubchem_compound", "association.predicate"] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound outputs: - id: MONDO semantic: Disease @@ -758,6 +755,7 @@ components: object.name, subject.name size: 1000 + filter: _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" predicate: treats source: "infores:ttd" response_mapping: @@ -771,13 +769,10 @@ components: inputs: - id: MONDO semantic: Disease - requestBodyType: object - requestBody: ## remove prefix - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:treats"]') }} ], - "scopes": ["object.mondo", "association.predicate"] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.mondo outputs: - id: "PUBCHEM.COMPOUND" semantic: SmallMolecule @@ -787,6 +782,7 @@ components: subject.name, object.name size: 1000 + filter: _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" predicate: treated_by source: "infores:ttd" response_mapping: @@ -795,7 +791,7 @@ components: # - qInput: "MONDO:0021094" ## Human immunodeficiency virus infection # oneOutput: "PUBCHEM.COMPOUND:103596027" ## GS-1156 (8-(3-Chloro-5-(trifluoromethyl)pyridin-2-yl)-8-azabicyclo[3.2.1]octan-3-one) pubchem_treats_icd11: - ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20association.predicate:%22biolink:treats%22%20AND%20_exists_:object.icd11%20AND%20NOT%20_exists_:object.mondo + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.icd11%20AND%20(NOT%20_exists_:object.mondo)%20AND%20association.predicate:%22biolink:treats%22 ## 9985 records ## exists: subject.pubchem_compound, association.predicate.biolink:treats, object.icd11 ## not exists: object.mondo @@ -804,13 +800,10 @@ components: inputs: - id: "PUBCHEM.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:treats" - AND (NOT _exists_:object.mondo) AND subject.pubchem_compound') | dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound outputs: - id: ICD11 semantic: Disease @@ -822,6 +815,7 @@ components: object.name, subject.name size: 1000 + filter: _exists_:subject.pubchem_compound AND _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" predicate: treats source: "infores:ttd" response_mapping: @@ -835,13 +829,10 @@ components: inputs: - id: ICD11 semantic: Disease - requestBodyType: object - requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:treats" - AND (NOT _exists_:object.mondo) AND object.icd11') | dump}}, - "scopes": [] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 outputs: - id: "PUBCHEM.COMPOUND" semantic: SmallMolecule @@ -851,6 +842,7 @@ components: subject.name, object.name size: 1000 + filter: _exists_:subject.pubchem_compound AND _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" predicate: treated_by source: "infores:ttd" response_mapping: @@ -859,7 +851,7 @@ components: # - qInput: "ICD11:MG51" ## Multidrug resistant infection # oneOutput: "PUBCHEM.COMPOUND:139600308" ## SPR206 ttd_drug_id_treats_mondo: - ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20association.predicate:%22biolink:treats%22%20AND%20_exists_:object.mondo%20AND%20NOT%20_exists_:subject.pubchem_compound + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20(NOT%20_exists_:subject.pubchem_compound)%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22 ## 2240 records ## exists: subject.ttd_drug_id, association.predicate.biolink:treats, object.mondo ## not exists: subject.pubchem_compound @@ -868,13 +860,10 @@ components: inputs: - id: "TTD.DRUG" semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:treats" - AND (NOT _exists_:subject.pubchem_compound) AND subject.ttd_drug_id') | dump}}, - "scopes": [] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_drug_id outputs: - id: MONDO semantic: Disease @@ -886,6 +875,7 @@ components: object.name, subject.name size: 1000 + filter: _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND _exists_:object.mondo AND association.predicate:"biolink:treats" predicate: treats source: "infores:ttd" response_mapping: @@ -899,13 +889,10 @@ components: inputs: - id: MONDO semantic: Disease - requestBodyType: object - requestBody: - body: >- ## take out mondo prefix - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:treats" - AND (NOT _exists_:subject.pubchem_compound) AND object.mondo') | dump}}, - "scopes": [] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.mondo outputs: - id: "TTD.DRUG" semantic: SmallMolecule @@ -915,6 +902,7 @@ components: subject.name, object.name size: 1000 + filter: _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND _exists_:object.mondo AND association.predicate:"biolink:treats" predicate: treated_by source: "infores:ttd" response_mapping: @@ -932,13 +920,10 @@ components: inputs: - id: "TTD.DRUG" semantic: SmallMolecule - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:treats" - AND (NOT _exists_:subject.pubchem_compound) AND (NOT _exists_:object.mondo) AND subject.ttd_drug_id')| dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_drug_id outputs: - id: ICD11 semantic: Disease @@ -951,6 +936,10 @@ components: object.name, subject.name size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:treats" predicate: treats source: "infores:ttd" response_mapping: @@ -964,13 +953,10 @@ components: inputs: - id: ICD11 semantic: Disease - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:treats" - AND (NOT _exists_:subject.pubchem_compound) AND (NOT _exists:object.mondo) AND object.icd11')| dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 outputs: - id: "TTD.DRUG" semantic: SmallMolecule @@ -982,6 +968,10 @@ components: subject.name, object.name size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:treats" predicate: treated_by source: "infores:ttd" response_mapping: @@ -997,13 +987,10 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:target_for"]') }} ], - "scopes": ["subject.uniprotkb", "association.predicate"] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.uniprotkb outputs: - id: MONDO semantic: Disease @@ -1017,6 +1004,7 @@ components: object.name, subject.name size: 1000 + filter: _exists_:subject.uniprotkb AND _exists_:object.mondo AND association.predicate:"biolink:target_for" predicate: target_for source: "infores:ttd" response_mapping: @@ -1030,13 +1018,10 @@ components: inputs: - id: MONDO semantic: Disease - requestBodyType: object - requestBody: - body: >- ## remove prefix for mondo - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:target_for"]') }} ], - "scopes": ["object.mondo", "association.predicate"] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.mondo outputs: - id: UniProtKB semantic: Gene @@ -1050,6 +1035,7 @@ components: subject.name, object.name size: 1000 + filter: _exists_:subject.uniprotkb AND _exists_:object.mondo AND association.predicate:"biolink:target_for" predicate: has_target source: "infores:ttd" response_mapping: @@ -1067,13 +1053,10 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object - requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:target_for" - AND (NOT _exists_:object.mondo) AND subject.uniprotkb') | dump}}, - "scopes": [] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.uniprotkb outputs: - id: ICD11 semantic: Disease @@ -1087,6 +1070,7 @@ components: object.name, subject.name size: 1000 + filter: _exists_:subject.uniprotkb AND _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND association.predicate:"biolink:target_for" predicate: target_for source: "infores:ttd" response_mapping: @@ -1100,13 +1084,10 @@ components: inputs: - id: ICD11 semantic: Disease - requestBodyType: object - requestBody: - body: >- ## no prefix - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:target_for" - AND (NOT _exists_:object.mondo) AND object.icd11') | dump}}, - "scopes": [] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 outputs: - id: UniProtKB semantic: Gene @@ -1120,6 +1101,7 @@ components: subject.name, object.name size: 1000 + filter: _exists_:subject.uniprotkb AND _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND association.predicate:"biolink:target_for" predicate: has_target source: "infores:ttd" response_mapping: @@ -1137,13 +1119,10 @@ components: inputs: - id: "TTD.TARGET" semantic: Gene - requestBodyType: object - requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:target_for" - AND (NOT _exists_:subject.uniprotkb) AND subject.ttd_target_id') | dump}}, - "scopes": [] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_target_id outputs: - id: MONDO semantic: Disease @@ -1157,6 +1136,7 @@ components: object.name, subject.name size: 1000 + filter: _exists_:subject.ttd_target_id AND (NOT _exists_:subject.uniprotkb) AND _exists_:object.mondo AND association.predicate:"biolink:target_for" predicate: target_for source: "infores:ttd" response_mapping: @@ -1170,13 +1150,10 @@ components: inputs: - id: MONDO semantic: Disease - requestBodyType: object - requestBody: - body: >- ## remove prefix for mondo - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:target_for" - AND (NOT _exists_:subject.uniprotkb) AND object.mondo') | dump}}, - "scopes": [] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.mondo outputs: - id: "TTD.TARGET" semantic: Gene @@ -1190,6 +1167,7 @@ components: subject.name, object.name size: 1000 + filter: _exists_:subject.ttd_target_id AND (NOT _exists_:subject.uniprotkb) AND _exists_:object.mondo AND association.predicate:"biolink:target_for" predicate: has_target source: "infores:ttd" response_mapping: @@ -1207,13 +1185,10 @@ components: inputs: - id: "TTD.TARGET" semantic: Gene - requestBodyType: object - requestBody: - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:target_for" - AND (NOT _exists_:subject.uniprotkb) AND (NOT _exists_:object.mondo) AND subject.ttd_target_id') | dump}}, - "scopes": [] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_target_id outputs: - id: ICD11 semantic: Disease @@ -1227,6 +1202,10 @@ components: object.name, subject.name size: 1000 + filter: >- + _exists_:subject.ttd_target_id AND (NOT _exists_:subject.uniprotkb) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:target_for" predicate: target_for source: "infores:ttd" response_mapping: @@ -1240,13 +1219,10 @@ components: inputs: - id: ICD11 semantic: Disease - requestBodyType: object - requestBody: - body: >- ## no prefix - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:target_for" - AND (NOT _exists_:subject.uniprotkb) AND (NOT _exists_:object.mondo) AND object.icd11') | dump}}, - "scopes": [] - } + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 outputs: - id: "TTD.TARGET" semantic: Gene @@ -1260,6 +1236,10 @@ components: subject.name, object.name size: 1000 + filter: >- + _exists_:subject.ttd_target_id AND (NOT _exists_:subject.uniprotkb) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:target_for" predicate: has_target source: "infores:ttd" response_mapping: @@ -1408,13 +1388,10 @@ components: inputs: - id: "PUBCHEM.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:interacts_with" - AND subject.pubchem_compound') | dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound outputs: - id: UniProtKB semantic: Gene @@ -1429,6 +1406,7 @@ components: object.name, subject.name size: 1000 + filter: _exists_:subject.pubchem_compound AND _exists_:object.uniprotkb AND association.predicate:"biolink:interacts_with" predicate: interacts_with source: "infores:ttd" response_mapping: @@ -1442,13 +1420,10 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:interacts_with" - AND object.uniprotkb') | dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.uniprotkb outputs: - id: "PUBCHEM.COMPOUND" semantic: SmallMolecule @@ -1463,6 +1438,7 @@ components: subject.name, object.name size: 1000 + filter: _exists_:subject.pubchem_compound AND _exists_:object.uniprotkb AND association.predicate:"biolink:interacts_with" predicate: interacts_with source: "infores:ttd" response_mapping: @@ -1481,13 +1457,10 @@ components: inputs: - id: "PUBCHEM.COMPOUND" semantic: SmallMolecule - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:interacts_with" - AND (_exists_:object.name) AND (NOT _exists_:object.uniprotkb) AND subject.pubchem_compound') | dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound outputs: - id: "TTD.TARGET" semantic: Gene @@ -1502,6 +1475,10 @@ components: object.name, subject.name size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND + _exists_:object.ttd_target_id AND (NOT _exists_:object.uniprotkb) AND _exists_:object.name + AND association.predicate:"biolink:interacts_with" predicate: interacts_with source: "infores:ttd" response_mapping: @@ -1515,13 +1492,10 @@ components: inputs: - id: "TTD.TARGET" semantic: Gene - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:interacts_with" - AND (_exists_:object.name) AND (NOT _exists_:object.uniprotkb) AND object.ttd_target_id') | dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.ttd_target_id outputs: - id: "PUBCHEM.COMPOUND" semantic: SmallMolecule @@ -1536,6 +1510,10 @@ components: subject.name, object.name size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND + _exists_:object.ttd_target_id AND (NOT _exists_:object.uniprotkb) AND _exists_:object.name + AND association.predicate:"biolink:interacts_with" predicate: interacts_with source: "infores:ttd" response_mapping: @@ -1554,13 +1532,10 @@ components: inputs: - id: "TTD.DRUG" semantic: SmallMolecule - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:interacts_with" - AND (NOT _exists_:subject.pubchem_compound) AND subject.ttd_drug_id') | dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_drug_id outputs: - id: UniProtKB semantic: Gene @@ -1575,6 +1550,10 @@ components: object.name, subject.name size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.uniprotkb AND + association.predicate:"biolink:interacts_with" predicate: interacts_with source: "infores:ttd" response_mapping: @@ -1588,13 +1567,10 @@ components: inputs: - id: UniProtKB semantic: Gene - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:interacts_with" - AND (NOT _exists_:subject.pubchem_compound) AND object.uniprotkb') | dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.uniprotkb outputs: - id: "TTD.DRUG" semantic: SmallMolecule @@ -1609,6 +1585,10 @@ components: subject.name, object.name size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.uniprotkb AND + association.predicate:"biolink:interacts_with" predicate: interacts_with source: "infores:ttd" response_mapping: @@ -1627,15 +1607,10 @@ components: inputs: - id: "TTD.DRUG" semantic: SmallMolecule - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:interacts_with" - AND (_exists_:subject.name) AND (_exists_:object.name) - AND (NOT _exists_:subject.pubchem_compound) AND (NOT _exists_:object.uniprotkb) - AND subject.ttd_drug_id') | dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_drug_id outputs: - id: "TTD.TARGET" semantic: Gene @@ -1650,6 +1625,10 @@ components: object.name, subject.name size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND _exists_:subject.name AND + _exists_:object.ttd_target_id AND (NOT _exists_:object.uniprotkb) AND _exists_:object.name AND + association.predicate:"biolink:interacts_with" predicate: interacts_with source: "infores:ttd" response_mapping: @@ -1663,15 +1642,10 @@ components: inputs: - id: "TTD.TARGET" semantic: Gene - requestBodyType: object requestBody: ## no prefix - body: >- - {"q": {{ queryInputs | replPrefix('association.predicate:"biolink:interacts_with" - AND (_exists_:subject.name) AND (_exists_:object.name) - AND (NOT _exists_:subject.pubchem_compound) AND (NOT _exists_:object.uniprotkb) - AND object.ttd_target_id') | dump}}, - "scopes": [] - } + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.ttd_target_id outputs: - id: "TTD.DRUG" semantic: SmallMolecule @@ -1686,6 +1660,10 @@ components: subject.name, object.name size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND _exists_:subject.name AND + _exists_:object.ttd_target_id AND (NOT _exists_:object.uniprotkb) AND _exists_:object.name AND + association.predicate:"biolink:interacts_with" predicate: interacts_with source: "infores:ttd" response_mapping: