From b44d7926d2ce71e18e29068cc453a19dce87e168 Mon Sep 17 00:00:00 2001
From: carlos-encs <110119864+carlos-encs@users.noreply.github.com>
Date: Wed, 21 Feb 2024 10:24:57 -0500
Subject: [PATCH] Jupyter script

---
 src/jupyter.sh | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)
 create mode 100644 src/jupyter.sh

diff --git a/src/jupyter.sh b/src/jupyter.sh
new file mode 100644
index 0000000..a25bd6b
--- /dev/null
+++ b/src/jupyter.sh
@@ -0,0 +1,25 @@
+#!/encs/bin/tcsh
+
+## Script for https://nag-devops.github.io/speed-hpc/#jupyter-notebooks
+## since it is salloc (or srun) (e.g salloc -p ps --mem=4000 --x11 -t 0-06:00) no need to configure cluster settings because
+## it would choose the proper computational node  
+
+module load singularity/3.10.4/default
+
+# Executing singularity image 
+srun singularity exec -B $PWD\:/speed-pwd,/speed-scratch/$USER\:/my-speed-scratch,/nettemp \
+      --env SHELL=/bin/bash --nv /speed-scratch/nag-public/openiss-cuda-conda-jupyter.sif \
+      /bin/bash -c '/opt/conda/bin/jupyter notebook --no-browser --notebook-dir=/speed-pwd \
+      --ip="*" --port=8888 --allow-root'
+
+## If you receive an error like:   FATAL:container creation failed: exec: "/usr/bin/nvidia-container-cli"
+## remove the parameter: --nv and execute again srun singularity ...
+
+# A token is generated when execution is successful
+
+## [I 09:10:49.547 NotebookApp] Jupyter Notebook 6.5.2 is running at:
+## [I 09:10:49.547 NotebookApp] http://speed-xx.encs.concordia.ca:8888/?token=xxxxxxxxxxxxxxxxxxxx
+## [I 09:10:49.547 NotebookApp]  or http://127.0.0.1:8888/?token=xxxxxxxxxxxxxxxxxxxx
+## [I 09:10:49.547 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
+
+# Continue with the ssh tunnel creation as described in: https://nag-devops.github.io/speed-hpc/#jupyter-notebooks
\ No newline at end of file