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Split software sources #67

Merged
merged 1 commit into from
Feb 7, 2022
Merged

Split software sources #67

merged 1 commit into from
Feb 7, 2022

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ptheywood
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@ptheywood ptheywood commented Sep 9, 2021

This splits the software documentation into many smaller rst files which are much more manageable, with their own easier to find rendered pages.

Closes #61

Whilst splitting this file into many smaller files, a number of additions and changes were made to the documentation, including:

History was a little messy, so has been squashed to avoid .git bloat.

…ich are much more manageable, with their own easier to find rendered pages.

Closes #61

Whilst splitting this file into many smaller files, a number of additions and changes were made to the documentation, including:

+ Adds (basic) documentation for:
  + IBM XL compilers (Closes #61)
  + Amber (Part of #78)
  + EMAN2
  + GRACE
  + Gromacs (Closes #37, part of #79)
  + NAMD
  + OpenMM
  + PLUMED
  + Singularity (Apptainer) (Closes #49)
  + Generic python information, with more detailed conda usage (Closes #47)
  + nvidia-smi (Closes #75)
  + HECBioSim project
  + IBM Collaboration project
  + Boost Module
  + FFTW module
  + NVTX library
  + PLUMED library
  + VTK
  + CMake
  + Make
+ Creates new `guides` section
  + Migrates the `profiling` documentation into the guides section
  + Migrates the `wanderings` about CUDA into the guides section
+ Adds some notes/warnings about potential WMLCE + RHEL 8 incompatibility. Larger changes still required (#63)
+ CSS/JS/_templates changes for a useful sidebar with the bootstrap theme with split source files
  + New issue #87 opened to consider replacing the theme to an actively maintained theme.
+ Removes relations.html from the sidebar, as styling issues were difficult to resolve nicely (Closes #77)
+ Adds sphinxext-rediraffe plugin for redirects for moved .html files (see conf.py)
+ Assorted RST improvements (links, crossrefs, quoteblocks, code-block, note, etc.)
+ Clarify module loads for RHEL 7 vs RHEL 8 where appropriate (Part of #73).
+ Assorted other improvements throughout the documentation
+ Adds the sphinx-copybutton plugin, for easy to copy code-block contents.

History was a little messy, so has been squashed to avoid `.git` bloat.
@markdturner markdturner merged commit aeadaea into main Feb 7, 2022
@ptheywood
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This build has failed on RTD, likely my changes to requirements.txt given the previous version of sphinx was several major versions behind.

I'll figure out how to fix it and get a new PR in (although I'm not sure why it didn't fail locally with the same requirements.txt).

https://readthedocs.org/projects/bede-documentation/builds/16013603/

@ptheywood ptheywood deleted the split-software-sources branch February 8, 2022 11:38
@ptheywood ptheywood mentioned this pull request Feb 8, 2022
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