build-test-package.yml

name: Build, test, package

on: [push,pull_request]

jobs:
  build-test-cxx:
    runs-on: ${{ matrix.os }}
    strategy:
      max-parallel: 3
      matrix:
        os: [ubuntu-18.04, windows-2019, macos-10.15]
        include:
          - os: ubuntu-18.04
            c-compiler: "gcc"
            cxx-compiler: "g++"
            itk-git-tag: "v5.2rc03"
            cmake-build-type: "MinSizeRel"
          - os: windows-2019
            c-compiler: "cl.exe"
            cxx-compiler: "cl.exe"
            itk-git-tag: "v5.2rc03"
            cmake-build-type: "Release"
          - os: macos-10.15
            c-compiler: "clang"
            cxx-compiler: "clang++"
            itk-git-tag: "v5.2rc03"
            cmake-build-type: "MinSizeRel"

    steps:
    - uses: actions/checkout@v1

    - name: Set up Python 3.7
      uses: actions/setup-python@v1
      with:
        python-version: 3.7

    - name: Install build dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install ninja

    - name: Get specific version of CMake, Ninja
      uses: lukka/get-cmake@v3.18.3

    - name: Download ITK
      run: |
        cd ..
        git clone https://github.com/InsightSoftwareConsortium/ITK.git
        cd ITK
        git checkout ${{ matrix.itk-git-tag }}

    - name: Build ITK
      if: matrix.os != 'windows-2019'
      run: |
        cd ..
        mkdir ITK-build
        cd ITK-build
        cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK
        ninja

    - name: Build ITK
      if: matrix.os == 'windows-2019'
      run: |
        cd ..
        mkdir ITK-build
        cd ITK-build
        call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
        cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK
        ninja
      shell: cmd

    - name: Fetch CTest driver script
      run: |
        curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O

    - name: Configure CTest script
      shell: bash
      run: |
        operating_system="${{ matrix.os }}"
        cat > dashboard.cmake << EOF
        set(CTEST_SITE "GitHubActions")
        file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT)
        file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/" CTEST_SOURCE_DIRECTORY)
        file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../build" CTEST_BINARY_DIRECTORY)
        set(dashboard_source_name "${GITHUB_REPOSITORY}")
        if(ENV{GITHUB_REF} MATCHES "master")
          set(branch "-master")
          set(dashboard_model "Continuous")
        else()
          set(branch "-${GITHUB_REF}")
          set(dashboard_model "Experimental")
        endif()
        set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}")
        set(CTEST_UPDATE_VERSION_ONLY 1)
        set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL})
        set(CTEST_BUILD_CONFIGURATION "Release")
        set(CTEST_CMAKE_GENERATOR "Ninja")
        set(CTEST_CUSTOM_WARNING_EXCEPTION
          \${CTEST_CUSTOM_WARNING_EXCEPTION}
          "invokes undefined behavior"
          # macOS Azure VM Warning
          "ld: warning: text-based stub file"
          )
        set(dashboard_no_clean 1)
        set(ENV{CC} ${{ matrix.c-compiler }})
        set(ENV{CXX} ${{ matrix.cxx-compiler }})
        if(WIN32)
          set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}")
        endif()
        set(dashboard_cache "
        ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-build
        BUILD_TESTING:BOOL=ON
        ")
        string(TIMESTAMP build_date "%Y-%m-%d")
        message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}")
        message("CTEST_SITE = \${CTEST_SITE}")
        include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake)
        EOF
        cat dashboard.cmake

    - name: Build and test
      if: matrix.os != 'windows-2019'
      run: |
        ctest -E elastix_run --output-on-failure -j 2 -V -S dashboard.cmake

    - name: Build and test
      if: matrix.os == 'windows-2019'
      run: |
        call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
        ctest -L Elastix --output-on-failure -j 2 -V -S dashboard.cmake
      shell: cmd

  build-linux-python-packages:
    runs-on: ubuntu-18.04
    strategy:
      max-parallel: 2
      matrix:
        python-version: [36, 37, 38, 39]
        include:
          - itk-python-git-tag: "v5.2rc03"

    steps:
    - uses: actions/checkout@v2

    - name: 'Free up disk space'
      run: |
        # Workaround for https://github.com/actions/virtual-environments/issues/709
        df -h
        sudo apt-get clean
        sudo rm -rf "/usr/local/share/boost"
        sudo rm -rf "$AGENT_TOOLSDIRECTORY"
        df -h

    - name: 'Fetch build script'
      run: |
        curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/dockcross-manylinux-download-cache-and-build-module-wheels.sh -O
        chmod u+x dockcross-manylinux-download-cache-and-build-module-wheels.sh

    - name: 'Build 🐍 Python 📦 package'
      run: |
        export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
        ./dockcross-manylinux-download-cache-and-build-module-wheels.sh cp${{ matrix.python-version }}

    - name: Publish Python package as GitHub Artifact
      uses: actions/upload-artifact@v1
      with:
        name: LinuxWheel${{ matrix.python-version }}
        path: dist

  build-macos-python-packages:
    runs-on: macos-10.15
    strategy:
      max-parallel: 2
      matrix:
        include:
          - itk-python-git-tag: "v5.2rc03"

    steps:
    - uses: actions/checkout@v2

    - name: 'Specific XCode version'
      run: |
        sudo xcode-select -s "/Applications/Xcode_11.7.app"

    - name: Get specific version of CMake, Ninja
      uses: lukka/get-cmake@v3.18.3

    - name: 'Fetch build script'
      run: |
        curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/macpython-download-cache-and-build-module-wheels.sh -O
        chmod u+x macpython-download-cache-and-build-module-wheels.sh

    - name: 'Build 🐍 Python 📦 package'
      run: |
        export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
        export MACOSX_DEPLOYMENT_TARGET=10.9
        ./macpython-download-cache-and-build-module-wheels.sh

    - name: Publish Python package as GitHub Artifact
      uses: actions/upload-artifact@v1
      with:
        name: MacOSWheels
        path: dist

  build-windows-python-packages:
    runs-on: windows-2019
    strategy:
      max-parallel: 2
      matrix:
        python-version-minor: [6, 7, 8, 9]
        include:
          - itk-python-git-tag: "v5.2rc03"

    steps:
    - name: Get specific version of CMake, Ninja
      uses: lukka/get-cmake@v3.18.3

    - uses: actions/checkout@v2
      with:
        path: "im"

    - name: 'Install Python'
      run: |
        $pythonArch = "64"
        $pythonVersion = "3.${{ matrix.python-version-minor }}"
        iex ((new-object net.webclient).DownloadString('https://raw.githubusercontent.com/scikit-build/scikit-ci-addons/master/windows/install-python.ps1'))

    - name: 'Fetch build dependencies'
      shell: bash
      run: |
        mv im ../../
        cd ../../im
        curl -L "https://github.com/InsightSoftwareConsortium/ITKPythonBuilds/releases/download/${{ matrix.itk-python-git-tag }}/ITKPythonBuilds-windows.zip" -o "ITKPythonBuilds-windows.zip"
        7z x ITKPythonBuilds-windows.zip -o/c/P -aoa -r
        curl -L "https://data.kitware.com/api/v1/file/5c0ad59d8d777f2179dd3e9c/download" -o "doxygen-1.8.11.windows.bin.zip"
        7z x doxygen-1.8.11.windows.bin.zip -o/c/P/doxygen -aoa -r
        curl -L "https://data.kitware.com/api/v1/file/5bbf87ba8d777f06b91f27d6/download/grep-win.zip" -o "grep-win.zip"
        7z x grep-win.zip -o/c/P/grep -aoa -r

    - name: 'Build 🐍 Python 📦 package'
      shell: cmd
      run: |
        cd ../../im
        call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
        set PATH="C:\P\grep;%PATH%"
        set CC=cl.exe
        set CXX=cl.exe
        C:\Python3${{ matrix.python-version-minor }}-x64\python.exe C:\P\IPP\scripts\windows_build_module_wheels.py --py-envs "3${{ matrix.python-version-minor }}-x64" --no-cleanup

    - name: Publish Python package as GitHub Artifact
      uses: actions/upload-artifact@v1
      with:
        name: WindowsWheel3.${{ matrix.python-version-minor }}
        path: ../../im/dist

  build-linux-opencl-python-packages:
    runs-on: ubuntu-18.04
    strategy:
      max-parallel: 2
      matrix:
        python-version: [36, 37, 38, 39]
        include:
          - itk-python-git-tag: "v5.2rc03"

    steps:
    - uses: actions/checkout@v2

    - name: 'Free up disk space'
      run: |
        # Workaround for https://github.com/actions/virtual-environments/issues/709
        df -h
        sudo apt-get clean
        sudo rm -rf "/usr/local/share/boost"
        sudo rm -rf "$AGENT_TOOLSDIRECTORY"
        df -h

    - name: 'Build 🐍 Python 📦 package'
      run: |
        export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
        ./wrapping/dockcross-manylinux-download-cache.sh
        ./wrapping/dockcross-manylinux-build-module-wheels-opencl.sh cp${{ matrix.python-version }}

    - name: Publish Python package as GitHub Artifact
      uses: actions/upload-artifact@v1
      with:
        name: LinuxOpenCLWheel${{ matrix.python-version }}
        path: dist

  build-macos-opencl-python-packages:
    runs-on: macos-10.15
    strategy:
      max-parallel: 2
      matrix:
        include:
          - itk-python-git-tag: "v5.2rc03"

    steps:
    - uses: actions/checkout@v2

    - name: Get specific version of CMake, Ninja
      uses: lukka/get-cmake@v3.18.3

    - name: 'Fetch build script'
      run: |
        curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/macpython-download-cache-and-build-module-wheels.sh -O
        chmod u+x macpython-download-cache-and-build-module-wheels.sh

    - name: 'Build 🐍 Python 📦 package'
      run: |
        export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
        export MACOSX_DEPLOYMENT_TARGET=10.9
        export ELASTIX_USE_OPENCL=1
        ./macpython-download-cache-and-build-module-wheels.sh

    - name: Publish Python package as GitHub Artifact
      uses: actions/upload-artifact@v1
      with:
        name: MacOSOpenCLWheels
        path: dist

  publish-python-packages-to-pypi:
    needs:
      - build-linux-python-packages
      - build-macos-python-packages
      - build-windows-python-packages
    runs-on: ubuntu-18.04

    steps:
    - name: Download Python Packages
      uses: actions/download-artifact@v2

    - name: Prepare packages for upload
      run: |
        ls -R
        for d in */; do
          mv ${d}/*.whl .
        done
        mkdir dist
        mv itk_elastix-*.whl dist/
        ls dist

    - name: Publish 🐍 Python 📦 package to PyPI
      if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
      uses: pypa/gh-action-pypi-publish@master
      with:
        user: __token__
        password: ${{ secrets.pypi_password }}

  publish-opencl-python-packages-to-pypi:
    needs:
      - build-linux-opencl-python-packages
      - build-macos-opencl-python-packages
    runs-on: ubuntu-18.04

    steps:
    - name: Download Python Packages
      uses: actions/download-artifact@v2

    - name: Prepare packages for upload
      run: |
        ls -R
        for d in */; do
          mv ${d}/*.whl .
        done
        mkdir dist
        mv itk_elastix_opencl-*.whl dist/
        ls dist

    - name: Publish 🐍 Python 📦 package to PyPI
      if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
      uses: pypa/gh-action-pypi-publish@master
      with:
        user: __token__
        password: ${{ secrets.opencl_pypi_password }}