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felsenstein_down! uses a nested loop over children and siblings for combine! ops. This is fine for binary trees but very slow (quadratic time complexity, with respect to children) for polytomies. Since a polytomy is equivalent to a binary tree with some added internal nodes with 0 branchlength, we can improve here.
The text was updated successfully, but these errors were encountered:
felsenstein_down!
uses a nested loop over children and siblings forcombine!
ops. This is fine for binary trees but very slow (quadratic time complexity, with respect to children) for polytomies. Since a polytomy is equivalent to a binary tree with some added internal nodes with 0 branchlength, we can improve here.The text was updated successfully, but these errors were encountered: