Below is the Github repository holding all the links to Colab Notebooks and files needed during the course.
Brian Munsky, Luis Aguilera, William Raymond,
Joshua Cook, Michael May, Zachary Fox,
Eric Ron, Keisha Cook, Kaan Ocal,
Ania Baetica, and Ana Carolina Padua.
[email protected] • 2023 Undergraduate Summer School Schedule • UQ-Bio • Munsky Group
| Date (MST) | Location | Description | Link |
|---|---|---|---|
| May 22 | Online | Intro to Python: Hello (Python) World, Types, Arithmetic Operations, Iterables, and Containers (Instructor: Zach Fox) |  |
| May 22 | Online | Intro to Python: Loops, Ranges, Functions, Lambdas, List Comprehension (Instructor: Luis Aguilera) | |
| May 22 | Online | Intro to Python: importing packages, classes/modules, os navigation, reading files (Instructor: Will Raymond) | |
| May 22 | Online | Intro to Python: Google Colab environment setup and navigation (Instructor: Will Raymond) | |
| May 22 | Online | Intro to Python: Matplotlib visualization (Instructor: Will Raymond) | |
| May 22 | Online | Intro to Python: NumPy and Linear Algebra Review (Instructor: Michael May) | |
| May 22 | Online | Intro to Python: Using OpenAI's GPT3.5 in Python (Instructor: Brian Munsky) | |
| Date (MST) | Location | Description | Link |
|---|---|---|---|
| May 24 | Online | Python Preliminary Image Loading and Processing (Instructor: Luis Aguilera) | |
| May 31 | in person | Tutorial 1.1 — Basics of Image Processing, Dr. Luis Aguilera (Colorado State University) | |
| June 1 | In person | Tutorial 1.2 — Image Segmentation and Tracking, Dr. Carolina Padua (Champalimaud Center for the Unknown, Lisbon, Portugal) | |
| Date (MST) | Location | Description | Link |
|---|---|---|---|
| June 2 | in person | Tutorial 2.1 — Basic statistics, Prof. Ania Baetica (Drexel University) | |
| June 5 | in person | Tutorial 2.2 – Basics of Regression, Classification and Machine Learning, Dr. Zachary Fox (Oak Ridge National Laboratory) | |
| Date (MST) | Location | Description | Link |
|---|---|---|---|
| June 6 | in person | Tutorial 3.1 – Formulating and solving models for gene regulation dynamics, Joshua Cook (Colorado State University) | |
| June 7 | in person | Tutorial 3.2 – Sampling from Probability Distributions and Generating Stochastic Simulations, Prof. Keisha Cook (Clemson University) | |
| Date (MST) | Location | Description | Link |
|---|---|---|---|
| June 8 | in person | Tutorial 4.1 – Chemical Master Equation, Michael May (Colorado State University) | |
| June 9 | in person | Tutorial 4.2 – Markov Chain Monte Carlo and Model Inference, Kaan Ocal (Edinburgh University) | |
Drug Discovery Challenge Presentation
| Date (MST) | Location | Description | Link |
|---|---|---|---|
| May 31 | NT135 | Stage 1: Experimental Quantification (Instructor: Luis Aguilera) | |
| June 2 | NT135 | Stage 2: Statistical Analysis (Instructor: Ania Baetica and Brian Munsky ) | |
| June 5 | NT135 | Stage 3: Regression Analysis (Instructor: Zach Fox and Brian Munsky ) | |
| June 7 | NT135 | Stage 4: Models and Stochastic Simulation (Instructor: Michael May, Joshua Cook, and Keisha Cook ) | |
| June 13 | BSB 107 | Final Predictions and Presentations | |
