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1. WormBase/scdefg WormBase/scdefg Public

   A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.

   Python 3 1

2. WormBase/wormcells-viz WormBase/wormcells-viz Public

   Visualization tools for C. elegans single cell RNA sequencing data

   JavaScript 3

3. seqdepth seqdepth Public

   Code and notebooks for seqdepth project

   Jupyter Notebook 1

4. pachterlab/poseidon pachterlab/poseidon Public

   poseidon system - open source syringe pumps and microscope for laboratories

   Jupyter Notebook 174 54

5. pachterlab/SBP_2019 pachterlab/SBP_2019 Public

   Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscript

   Jupyter Notebook 15 2

6. vals/single-cell-studies vals/single-cell-studies Public

   Example analysis using the 'Single cell studies database'

   Jupyter Notebook 8 2