diff --git a/.dvc/.gitignore b/.dvc/.gitignore index 8bee8544..c2159360 100644 --- a/.dvc/.gitignore +++ b/.dvc/.gitignore @@ -1,12 +1,9 @@ -/config.local -/updater -/lock -/updater.lock -/state-journal -/state-wal -/state -/cache -/tmp -/tmp -/tmp -/tmp +/config.local +/cache +/updater +/lock +/updater.lock +/state-journal +/state-wal +/state +/tmp \ No newline at end of file diff --git a/.dvc/config b/.dvc/config index f6a2ef73..42a9a249 100644 --- a/.dvc/config +++ b/.dvc/config @@ -1,6 +1,14 @@ [core] - remote = gdrive2 + remote = gdrive3 ['remote "local"'] url = ../../suite2p_data -['remote "gdrive2"'] - url = gdrive://1BH9yQf735uGMGyoGrPJ_HgxtwxEsVCGp \ No newline at end of file +['remote "gdrive3"'] + url = gdrive://0ACw_QYaWTX7mUk9PVA + gdrive_client_id = 81639168383-ardpa0rrsolgo9geqekdeef5k78n3hh2.apps.googleusercontent.com + gdrive_client_secret = _2kMgM7BoFg27ID9zSNmdpy_ + gdrive_user_credentials_file = tmp/gdrive-user-credentials.json +['remote "gdrive-travis"'] + url = gdrive://0ACw_QYaWTX7mUk9PVA + gdrive_use_service_account = true + gdrive_service_account_email = travis4@suite2p-testdata-dvc.iam.gserviceaccount.com + gdrive_service_account_p12_file_path = .dvc/creds/suite2p-testdata-dvc-b0d23791539c.p12 diff --git a/.dvc/creds/suite2p-testdata-dvc-b0d23791539c.p12 b/.dvc/creds/suite2p-testdata-dvc-b0d23791539c.p12 new file mode 100644 index 00000000..cd82c0cc Binary files /dev/null and b/.dvc/creds/suite2p-testdata-dvc-b0d23791539c.p12 differ diff --git a/.dvc/plots/confusion.json b/.dvc/plots/confusion.json new file mode 100644 index 00000000..70a3b0dd --- /dev/null +++ b/.dvc/plots/confusion.json @@ -0,0 +1,30 @@ +{ + "$schema": "https://vega.github.io/schema/vega-lite/v4.json", + "data": { + "values": "" + }, + "title": "", + "mark": "rect", + "encoding": { + "x": { + "field": "", + "type": "nominal", + "sort": "ascending", + "title": "" + }, + "y": { + "field": "", + "type": "nominal", + "sort": "ascending", + "title": "" + }, + "color": { + "aggregate": "count", + "type": "quantitative" + }, + "facet": { + "field": "rev", + "type": "nominal" + } + } +} diff --git a/.dvc/plots/default.json b/.dvc/plots/default.json new file mode 100644 index 00000000..7885140f --- /dev/null +++ b/.dvc/plots/default.json @@ -0,0 +1,29 @@ +{ + "$schema": "https://vega.github.io/schema/vega-lite/v4.json", + "data": { + "values": "" + }, + "title": "", + "mark": { + "type": "line" + }, + "encoding": { + "x": { + "field": "", + "type": "quantitative", + "title": "" + }, + "y": { + "field": "", + "type": "quantitative", + "title": "", + "scale": { + "zero": false + } + }, + "color": { + "field": "rev", + "type": "nominal" + } + } +} diff --git a/.dvc/plots/scatter.json b/.dvc/plots/scatter.json new file mode 100644 index 00000000..fb1ea416 --- /dev/null +++ b/.dvc/plots/scatter.json @@ -0,0 +1,27 @@ +{ + "$schema": "https://vega.github.io/schema/vega-lite/v4.json", + "data": { + "values": "" + }, + "title": "", + "mark": "point", + "encoding": { + "x": { + "field": "", + "type": "quantitative", + "title": "" + }, + "y": { + "field": "", + "type": "quantitative", + "title": "", + "scale": { + "zero": false + } + }, + "color": { + "field": "rev", + "type": "nominal" + } + } +} diff --git a/.dvc/plots/smooth.json b/.dvc/plots/smooth.json new file mode 100644 index 00000000..79d0b38a --- /dev/null +++ b/.dvc/plots/smooth.json @@ -0,0 +1,39 @@ +{ + "$schema": "https://vega.github.io/schema/vega-lite/v4.json", + "data": { + "values": "" + }, + "title": "", + "mark": { + "type": "line" + }, + "encoding": { + "x": { + "field": "", + "type": "quantitative", + "title": "" + }, + "y": { + "field": "", + "type": "quantitative", + "title": "", + "scale": { + "zero": false + } + }, + "color": { + "field": "rev", + "type": "nominal" + } + }, + "transform": [ + { + "loess": "", + "on": "", + "groupby": [ + "rev" + ], + "bandwidth": 0.3 + } + ] +} diff --git a/.dvc/tmp/gdrive-user-credentials.json b/.dvc/tmp/gdrive-user-credentials.json deleted file mode 100644 index ed45f345..00000000 --- a/.dvc/tmp/gdrive-user-credentials.json +++ /dev/null @@ -1 +0,0 @@ -{"access_token": "ya29.a0AfH6SMCn_2lpJ464HEazmgouXqAW72hTK7nuaNWBALOjElPAGNNyRUGMlan1Olnkv9T069743zQRB-ZZp1anag-cuMV-lNEuvy_JvT2_Ev5bUNeAL7phhGF_A0w1VKeHeJbZeZZrZYHO3zas1OaZ0DwChz_aCzIUuperUQ", "client_id": "710796635688-iivsgbgsb6uv1fap6635dhvuei09o66c.apps.googleusercontent.com", "client_secret": "a1Fz59uTpVNeG_VGuSKDLJXv", "refresh_token": "1//0fpJK6wboLxL7CgYIARAAGA8SNwF-L9IrKmhg8LLnJuWRCiN_YIE88ImD9Y0yV6iCIw220vP3gD4nISe-K5aq8l_r0m1qcUW1D_w", "token_expiry": "2020-07-23T14:27:57Z", "token_uri": "https://oauth2.googleapis.com/token", "user_agent": null, "revoke_uri": "https://oauth2.googleapis.com/revoke", "id_token": null, "id_token_jwt": null, "token_response": {"access_token": "ya29.a0AfH6SMCn_2lpJ464HEazmgouXqAW72hTK7nuaNWBALOjElPAGNNyRUGMlan1Olnkv9T069743zQRB-ZZp1anag-cuMV-lNEuvy_JvT2_Ev5bUNeAL7phhGF_A0w1VKeHeJbZeZZrZYHO3zas1OaZ0DwChz_aCzIUuperUQ", "expires_in": 3599, "scope": "https://www.googleapis.com/auth/drive.appdata https://www.googleapis.com/auth/drive", "token_type": "Bearer"}, "scopes": ["https://www.googleapis.com/auth/drive", "https://www.googleapis.com/auth/drive.appdata"], "token_info_uri": "https://oauth2.googleapis.com/tokeninfo", "invalid": false, "_class": "OAuth2Credentials", "_module": "oauth2client.client"} \ No newline at end of file diff --git a/.gitignore b/.gitignore index 903d7777..344793cb 100644 --- a/.gitignore +++ b/.gitignore @@ -65,3 +65,6 @@ doctrees/ Network Trash Folder Temporary Items .apdisk + +# data +data/test_data \ No newline at end of file diff --git a/.travis.yml b/.travis.yml index 17d203a5..5be8c5be 100644 --- a/.travis.yml +++ b/.travis.yml @@ -25,7 +25,7 @@ install: - conda env create -f environment.yml - source activate suite2p - pip install .[data] -- dvc pull +- dvc pull -r gdrive-travis - pip install coveralls script: - coverage run --source=suite2p setup.py test diff --git a/README.md b/README.md index 8e5bdd51..fd44a0cc 100644 --- a/README.md +++ b/README.md @@ -58,7 +58,9 @@ The software has been heavily tested on Windows 10 and Ubuntu 18.04, and less we 2. Run `conda env create -f environment.yml` 3. To activate this new environment, run `conda activate suite2p` (you will have to activate every time you want to run suite2p) 4. Install the local version of suite2p into this environment in develop mode, with everything to get test data: `pip install .[data]` -5. Download the data: ``dvc pull``. Follow the authentication instructions in the output. +5. Download the data: ``dvc pull``. Follow the authentication instructions in the output. + a. (**Note**: do *not* commit the json credentials file that comes out afterwards, git should ignore it.) + b. if you only wan to download the data, you can download from the read-only remote with this command: ``dvc pull -r gdrive-travis`` 6. Run tests: `python setup.py test` diff --git a/data/.gitignore b/data/.gitignore deleted file mode 100644 index 44224559..00000000 --- a/data/.gitignore +++ /dev/null @@ -1,11 +0,0 @@ -# Only track dvc files. -# Template from https://stackoverflow.com/questions/987142/make-gitignore-ignore-everything-except-a-few-files - -# Ignore everything -* - -# But not these files... -!*.dvc - -# ...even if they are in subdirectories -!*/ diff --git a/data/test_data.dvc b/data/test_data.dvc new file mode 100644 index 00000000..d13fe5b4 --- /dev/null +++ b/data/test_data.dvc @@ -0,0 +1,3 @@ +outs: +- md5: 484b58990efd6929863cd77108f68ab0.dir + path: test_data diff --git a/data/test_data/.gitignore b/data/test_data/.gitignore deleted file mode 100644 index fbd9f7f2..00000000 --- a/data/test_data/.gitignore +++ /dev/null @@ -1 +0,0 @@ -/input1.tif diff --git a/data/test_data/1plane1chan/suite2p/ops1.npy.dvc b/data/test_data/1plane1chan/suite2p/ops1.npy.dvc deleted file mode 100644 index 5ecd6cae..00000000 --- a/data/test_data/1plane1chan/suite2p/ops1.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: cc08fe994af7309088efa5ebdb90750e -outs: -- md5: 4680059696ea07d829c6213e71e8a681 - path: ops1.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan/suite2p/plane0/F.npy.dvc b/data/test_data/1plane1chan/suite2p/plane0/F.npy.dvc deleted file mode 100644 index b1d7b4b5..00000000 --- a/data/test_data/1plane1chan/suite2p/plane0/F.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: cb3209414cb9e1de2532d4bb2a033f91 -outs: -- md5: 86713771ee3e99d0943a76fcf87b031f - path: F.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan/suite2p/plane0/Fneu.npy.dvc b/data/test_data/1plane1chan/suite2p/plane0/Fneu.npy.dvc deleted file mode 100644 index 1b9fcffd..00000000 --- a/data/test_data/1plane1chan/suite2p/plane0/Fneu.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: a0336eb7f5fee9be411e8565fb3e4ac8 -outs: -- md5: 74c1b3f0fbee2fee6413a89ee249c63e - path: Fneu.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan/suite2p/plane0/iscell.npy.dvc b/data/test_data/1plane1chan/suite2p/plane0/iscell.npy.dvc deleted file mode 100644 index 2e021d23..00000000 --- a/data/test_data/1plane1chan/suite2p/plane0/iscell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 5e5ad9d364d92c5a0649b241dac5460a -outs: -- md5: e063ce2859f8df70ebeaa7a429411a68 - path: iscell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan/suite2p/plane0/ops.npy.dvc b/data/test_data/1plane1chan/suite2p/plane0/ops.npy.dvc deleted file mode 100644 index a0436a39..00000000 --- a/data/test_data/1plane1chan/suite2p/plane0/ops.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 4203de60c99d15e5555915df9b788476 -outs: -- md5: 4b7cfbfa41ead96ed4896319486e6208 - path: ops.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan/suite2p/plane0/spks.npy.dvc b/data/test_data/1plane1chan/suite2p/plane0/spks.npy.dvc deleted file mode 100644 index e6e779c3..00000000 --- a/data/test_data/1plane1chan/suite2p/plane0/spks.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 0cda0dc9a2fa8f3a2c9dd639f9eb7ada -outs: -- md5: 3d2e13155f153a9b36b1a62ed6c0257c - path: spks.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan/suite2p/plane0/stat.npy.dvc b/data/test_data/1plane1chan/suite2p/plane0/stat.npy.dvc deleted file mode 100644 index 87785e4b..00000000 --- a/data/test_data/1plane1chan/suite2p/plane0/stat.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: f3b4a3b549591afd9a7bff2c93cb47c6 -outs: -- md5: 144484cd1e07eff62abee5f683847558 - path: stat.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan/suite2p/test_write_tiff.tif.dvc b/data/test_data/1plane1chan/suite2p/test_write_tiff.tif.dvc deleted file mode 100644 index a05b1ce2..00000000 --- a/data/test_data/1plane1chan/suite2p/test_write_tiff.tif.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 430095fcc5f245300f4e2aa57ab34302 -outs: -- md5: 721425f9dc7aa32a677cbb3a35ba1ac1 - path: test_write_tiff.tif - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan1500/suite2p/ops1.npy.dvc b/data/test_data/1plane1chan1500/suite2p/ops1.npy.dvc deleted file mode 100644 index 0605ba6c..00000000 --- a/data/test_data/1plane1chan1500/suite2p/ops1.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: f8365d7c327e70250f9ea692cf798c6c -outs: -- md5: 12a0357062c63cd1821a0a2b7992694c - path: ops1.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan1500/suite2p/plane0/F.npy.dvc b/data/test_data/1plane1chan1500/suite2p/plane0/F.npy.dvc deleted file mode 100644 index 377505ea..00000000 --- a/data/test_data/1plane1chan1500/suite2p/plane0/F.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: e6e4ce447aeb1d68356e758e740fb7c2 -outs: -- md5: c2012e409aab2bab98de9431f9be8d31 - path: F.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan1500/suite2p/plane0/Fneu.npy.dvc b/data/test_data/1plane1chan1500/suite2p/plane0/Fneu.npy.dvc deleted file mode 100644 index 2785d0f9..00000000 --- a/data/test_data/1plane1chan1500/suite2p/plane0/Fneu.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 82f4886c7034e765c1ceef841a210963 -outs: -- md5: 6b7b79f8b37184abb591d2a8757b3812 - path: Fneu.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan1500/suite2p/plane0/iscell.npy.dvc b/data/test_data/1plane1chan1500/suite2p/plane0/iscell.npy.dvc deleted file mode 100644 index 8945581e..00000000 --- a/data/test_data/1plane1chan1500/suite2p/plane0/iscell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: d05f5812d304cf69142d9d46817b6db4 -outs: -- md5: c1c24e3264648697678d1e0d6bcecfee - path: iscell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan1500/suite2p/plane0/ops.npy.dvc b/data/test_data/1plane1chan1500/suite2p/plane0/ops.npy.dvc deleted file mode 100644 index d7adde91..00000000 --- a/data/test_data/1plane1chan1500/suite2p/plane0/ops.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: aa31120aa9a43b43f9e8a42e5a0613a3 -outs: -- md5: 377caef6cd5e2c4b6759b548759c180c - path: ops.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan1500/suite2p/plane0/spks.npy.dvc b/data/test_data/1plane1chan1500/suite2p/plane0/spks.npy.dvc deleted file mode 100644 index 83671e81..00000000 --- a/data/test_data/1plane1chan1500/suite2p/plane0/spks.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 982dfd9fcef2fcbcd1d1115d8b7f4824 -outs: -- md5: a6cbf8b8b3e9500e337747ce69c11f39 - path: spks.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane1chan1500/suite2p/plane0/stat.npy.dvc b/data/test_data/1plane1chan1500/suite2p/plane0/stat.npy.dvc deleted file mode 100644 index a9f58d0e..00000000 --- a/data/test_data/1plane1chan1500/suite2p/plane0/stat.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 4bba2585a6b6be704f68fe85df519370 -outs: -- md5: f8b875e9d384aed4a018683474cb9bea - path: stat.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/ops1.npy.dvc b/data/test_data/1plane2chan-scanimage/suite2p/ops1.npy.dvc deleted file mode 100644 index ae54a8e2..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/ops1.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 110ce1bfa5a15a735ebd095c1f877834 -outs: -- md5: 769312152b4e1eab22dd54bf41567207 - path: ops1.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/F.npy.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/F.npy.dvc deleted file mode 100644 index ec9cb990..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/F.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 4f49c17cc935dff55f6d26a7e14ee566 -outs: -- md5: e7268999f4ab0a592a74be0a0e02af61 - path: F.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/F_chan2.npy.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/F_chan2.npy.dvc deleted file mode 100644 index 8a1bddc4..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/F_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 938eaa6f35b87dd472e2a2baa7a2a372 -outs: -- md5: acce8cdbaa799f428eecbe2b78f2e5c1 - path: F_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/Fneu.npy.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/Fneu.npy.dvc deleted file mode 100644 index f4a0b07f..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/Fneu.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 0551618c7c1a79e67d71d84b409096c0 -outs: -- md5: f2ece53fddf426fc32d94d335f660614 - path: Fneu.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/Fneu_chan2.npy.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/Fneu_chan2.npy.dvc deleted file mode 100644 index e27f56e4..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/Fneu_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: cbf9a2578c4635daee8f710ce00fa561 -outs: -- md5: f00fb412422aa59fb835b83c112ab063 - path: Fneu_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/data.bin.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/data.bin.dvc deleted file mode 100644 index c431992c..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/data.bin.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 5138160e16f7a433d3fad7091ab0cc46 -outs: -- md5: 72fa6099927532baafe24a4b333e109c - path: data.bin - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/data_chan2.bin.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/data_chan2.bin.dvc deleted file mode 100644 index faf2841c..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/data_chan2.bin.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: a1a3cf5807c6c86edf84cbddaff4d6dd -outs: -- md5: e67ab230b6e351b47d8d973645cdb97e - path: data_chan2.bin - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/iscell.npy.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/iscell.npy.dvc deleted file mode 100644 index c5a4a7d5..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/iscell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: ccd718f821e336d54fbc758f83fefd46 -outs: -- md5: 737d3be2e3d7b6921fedb9954ff80de8 - path: iscell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/ops.npy.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/ops.npy.dvc deleted file mode 100644 index 16e0ca9a..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/ops.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 70601e20276fba83ba5083e0737b8b7a -outs: -- md5: d0b336389728aec91d163e7c1178ac2d - path: ops.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/redcell.npy.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/redcell.npy.dvc deleted file mode 100644 index 73f76761..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/redcell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 954c9732a5f976f7aa53231c2a1353d7 -outs: -- md5: d3d01d264ffc4afd10461621271dea48 - path: redcell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/spks.npy.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/spks.npy.dvc deleted file mode 100644 index 000a380c..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/spks.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: ac8910db3c3785e4fb28732c33bde7a1 -outs: -- md5: d2c7019dee1dcbabf2a25b0581ea3bb6 - path: spks.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan-scanimage/suite2p/plane0/stat.npy.dvc b/data/test_data/1plane2chan-scanimage/suite2p/plane0/stat.npy.dvc deleted file mode 100644 index a77e5f6c..00000000 --- a/data/test_data/1plane2chan-scanimage/suite2p/plane0/stat.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 85555b82cd3751b00754e408267e39cd -outs: -- md5: 4072fc572f96a37626a1355521467d6c - path: stat.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan/suite2p/ops1.npy.dvc b/data/test_data/1plane2chan/suite2p/ops1.npy.dvc deleted file mode 100644 index ee78e23c..00000000 --- a/data/test_data/1plane2chan/suite2p/ops1.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 409725dfd216fd5c4f2bbc3b419cd52b -outs: -- md5: 530eee0c2d8447f325c0d1249b07885b - path: ops1.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan/suite2p/plane0/F.npy.dvc b/data/test_data/1plane2chan/suite2p/plane0/F.npy.dvc deleted file mode 100644 index d585b5a0..00000000 --- a/data/test_data/1plane2chan/suite2p/plane0/F.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 342c910634d3975f1441891ebc572e20 -outs: -- md5: 7f35bf7948f7f32a3c9ed67d01403f1a - path: F.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan/suite2p/plane0/F_chan2.npy.dvc b/data/test_data/1plane2chan/suite2p/plane0/F_chan2.npy.dvc deleted file mode 100644 index 8ca8bfb5..00000000 --- a/data/test_data/1plane2chan/suite2p/plane0/F_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 2ab0e9708aeb70a3459ef977aa2b508f -outs: -- md5: 333fb5afca454bb7c471db68f7b64948 - path: F_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan/suite2p/plane0/Fneu.npy.dvc b/data/test_data/1plane2chan/suite2p/plane0/Fneu.npy.dvc deleted file mode 100644 index 89877290..00000000 --- a/data/test_data/1plane2chan/suite2p/plane0/Fneu.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 6e274869502c6bad5739720d1f47fdc2 -outs: -- md5: 8049143474885dbe336c56fed97167d8 - path: Fneu.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan/suite2p/plane0/Fneu_chan2.npy.dvc b/data/test_data/1plane2chan/suite2p/plane0/Fneu_chan2.npy.dvc deleted file mode 100644 index 217b6e8f..00000000 --- a/data/test_data/1plane2chan/suite2p/plane0/Fneu_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 26279c6972fe6c5d0504c4048c8f2c95 -outs: -- md5: 2c77b7b9be0276d888c5495a457856eb - path: Fneu_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan/suite2p/plane0/iscell.npy.dvc b/data/test_data/1plane2chan/suite2p/plane0/iscell.npy.dvc deleted file mode 100644 index aa2d1ecc..00000000 --- a/data/test_data/1plane2chan/suite2p/plane0/iscell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 554ac029df952131b110283e611178a0 -outs: -- md5: 63519dc05baa9f588e6787d4ba6d0b40 - path: iscell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan/suite2p/plane0/ops.npy.dvc b/data/test_data/1plane2chan/suite2p/plane0/ops.npy.dvc deleted file mode 100644 index 27eb4457..00000000 --- a/data/test_data/1plane2chan/suite2p/plane0/ops.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: c0b1ab8c53625c8fd79b804a541b0caf -outs: -- md5: 0234b52424556c7855cfb6cfd8c15d36 - path: ops.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan/suite2p/plane0/redcell.npy.dvc b/data/test_data/1plane2chan/suite2p/plane0/redcell.npy.dvc deleted file mode 100644 index c28a5805..00000000 --- a/data/test_data/1plane2chan/suite2p/plane0/redcell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: d02a2da71ed9dbbb63ab71d0cc062081 -outs: -- md5: 11afd2e396e86a9e1bb65bd72bd0a786 - path: redcell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan/suite2p/plane0/spks.npy.dvc b/data/test_data/1plane2chan/suite2p/plane0/spks.npy.dvc deleted file mode 100644 index 3017643f..00000000 --- a/data/test_data/1plane2chan/suite2p/plane0/spks.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 72efda3a7003a9bdf6bc5c9869ad7a07 -outs: -- md5: b4b623f0947a4f8d7bf6b236473a8a4a - path: spks.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/1plane2chan/suite2p/plane0/stat.npy.dvc b/data/test_data/1plane2chan/suite2p/plane0/stat.npy.dvc deleted file mode 100644 index 7f54c4de..00000000 --- a/data/test_data/1plane2chan/suite2p/plane0/stat.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: a797d5666a8b9a77c01c8b66392e9117 -outs: -- md5: 4b78132c8a6dd1c13cf9a2a9d02d2214 - path: stat.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/combined/F.npy.dvc b/data/test_data/2plane2chan/suite2p/combined/F.npy.dvc deleted file mode 100644 index f5f951bf..00000000 --- a/data/test_data/2plane2chan/suite2p/combined/F.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 0250c10c3a1273bb754cc014bcde3bef -outs: -- md5: d68804b6701a4de68ab16e0e52e14e10 - path: F.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/combined/Fneu.npy.dvc b/data/test_data/2plane2chan/suite2p/combined/Fneu.npy.dvc deleted file mode 100644 index d1bf34ca..00000000 --- a/data/test_data/2plane2chan/suite2p/combined/Fneu.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 04bbd3544916318d5ae43b8f825e1cb4 -outs: -- md5: 14788ea26eb645819ac6450997a14b5e - path: Fneu.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/combined/iscell.npy.dvc b/data/test_data/2plane2chan/suite2p/combined/iscell.npy.dvc deleted file mode 100644 index 54ce8e1d..00000000 --- a/data/test_data/2plane2chan/suite2p/combined/iscell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: bdb70f8b82e9f97cfe4196e27dd8a538 -outs: -- md5: 68ff9ccbb222637541f2db94e13c63c0 - path: iscell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/combined/ops.npy.dvc b/data/test_data/2plane2chan/suite2p/combined/ops.npy.dvc deleted file mode 100644 index a7f69737..00000000 --- a/data/test_data/2plane2chan/suite2p/combined/ops.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: f3e0588552c3364e12b3a3a2cfe9581a -outs: -- md5: 923ecd291abba383b26f68d3a7583284 - path: ops.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/combined/redcell.npy.dvc b/data/test_data/2plane2chan/suite2p/combined/redcell.npy.dvc deleted file mode 100644 index 8765fcc7..00000000 --- a/data/test_data/2plane2chan/suite2p/combined/redcell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: cd3eca19497223aa7ee3009fa5c55eda -outs: -- md5: 899372609653f80db370434f77c9efdd - path: redcell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/combined/spks.npy.dvc b/data/test_data/2plane2chan/suite2p/combined/spks.npy.dvc deleted file mode 100644 index 5314ba56..00000000 --- a/data/test_data/2plane2chan/suite2p/combined/spks.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 52e98ed3656c1259e932d67ba6738e7d -outs: -- md5: 2ebd6a244715815b1afc59b13b3fd740 - path: spks.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/combined/stat.npy.dvc b/data/test_data/2plane2chan/suite2p/combined/stat.npy.dvc deleted file mode 100644 index 349cecac..00000000 --- a/data/test_data/2plane2chan/suite2p/combined/stat.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: a24919df743bcc5709c2ce8ea8b1ebf4 -outs: -- md5: 49dbc53052cafe3b92868fdc2305935e - path: stat.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/ops1.npy.dvc b/data/test_data/2plane2chan/suite2p/ops1.npy.dvc deleted file mode 100644 index a76f716c..00000000 --- a/data/test_data/2plane2chan/suite2p/ops1.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 3f154bbf5e4a6b517033b6daaf62ff40 -outs: -- md5: 146fda022c989c563cd34e557baa43bb - path: ops1.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane0/F.npy.dvc b/data/test_data/2plane2chan/suite2p/plane0/F.npy.dvc deleted file mode 100644 index 96f14c80..00000000 --- a/data/test_data/2plane2chan/suite2p/plane0/F.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: ad9f5795ca801594528546f9bd948f82 -outs: -- md5: 04d8a77ba39a4d0ff73ff2e0e4d0a3db - path: F.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane0/F_chan2.npy.dvc b/data/test_data/2plane2chan/suite2p/plane0/F_chan2.npy.dvc deleted file mode 100644 index c907b0fe..00000000 --- a/data/test_data/2plane2chan/suite2p/plane0/F_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 117734cb310961d0b4b24cbe8596ea75 -outs: -- md5: 928dbdff2802fcaa6710f54a45a05d43 - path: F_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane0/Fneu.npy.dvc b/data/test_data/2plane2chan/suite2p/plane0/Fneu.npy.dvc deleted file mode 100644 index 67c766b5..00000000 --- a/data/test_data/2plane2chan/suite2p/plane0/Fneu.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 63b6e61d3aaf5d0d4045eb27916a0b59 -outs: -- md5: 198b66771a19295988532977a4df5ff1 - path: Fneu.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane0/Fneu_chan2.npy.dvc b/data/test_data/2plane2chan/suite2p/plane0/Fneu_chan2.npy.dvc deleted file mode 100644 index fe62f748..00000000 --- a/data/test_data/2plane2chan/suite2p/plane0/Fneu_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 4e32da80615dbcb1b955073f044eb55e -outs: -- md5: fef712bda6b8be0ba8ac1be0f77f5a83 - path: Fneu_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane0/iscell.npy.dvc b/data/test_data/2plane2chan/suite2p/plane0/iscell.npy.dvc deleted file mode 100644 index 22b6d358..00000000 --- a/data/test_data/2plane2chan/suite2p/plane0/iscell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: bbbf27eab373712f8e424b663bbe4478 -outs: -- md5: 10b814c8850b1cc8a88698406e3d12cc - path: iscell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane0/ops.npy.dvc b/data/test_data/2plane2chan/suite2p/plane0/ops.npy.dvc deleted file mode 100644 index ba81b0ce..00000000 --- a/data/test_data/2plane2chan/suite2p/plane0/ops.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 57565476045492f9c4ee59728f9a69ab -outs: -- md5: 8313a95d2bba4d2bfdf5a71dfcfc87fd - path: ops.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane0/redcell.npy.dvc b/data/test_data/2plane2chan/suite2p/plane0/redcell.npy.dvc deleted file mode 100644 index 3d2a3757..00000000 --- a/data/test_data/2plane2chan/suite2p/plane0/redcell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 6f8fba363af4f350773327adc004ac6c -outs: -- md5: cf79065071a8414b0fbd2530f3909701 - path: redcell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane0/spks.npy.dvc b/data/test_data/2plane2chan/suite2p/plane0/spks.npy.dvc deleted file mode 100644 index 58c0c8d2..00000000 --- a/data/test_data/2plane2chan/suite2p/plane0/spks.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 79933a9b597260a818e795ed6b8ee84f -outs: -- md5: 3aec553a11e42639cafdf7f6462b08d4 - path: spks.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane0/stat.npy.dvc b/data/test_data/2plane2chan/suite2p/plane0/stat.npy.dvc deleted file mode 100644 index c0e7e315..00000000 --- a/data/test_data/2plane2chan/suite2p/plane0/stat.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 002f82a3b0fe7c1731f8f5c702352a8f -outs: -- md5: 21a42f03646458cebe219a207c98614f - path: stat.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane1/F.npy.dvc b/data/test_data/2plane2chan/suite2p/plane1/F.npy.dvc deleted file mode 100644 index 015c7a4e..00000000 --- a/data/test_data/2plane2chan/suite2p/plane1/F.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: ef5ac5b14d3c411cb64b93f8dec1dac1 -outs: -- md5: d30ba8f86cb8bc49b64806965e4db96a - path: F.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane1/F_chan2.npy.dvc b/data/test_data/2plane2chan/suite2p/plane1/F_chan2.npy.dvc deleted file mode 100644 index 0de631eb..00000000 --- a/data/test_data/2plane2chan/suite2p/plane1/F_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 97ac795034449a5b5334c7f30c6c781b -outs: -- md5: 277cd3e3808a1e7c8a3c1d397eb48d89 - path: F_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane1/Fneu.npy.dvc b/data/test_data/2plane2chan/suite2p/plane1/Fneu.npy.dvc deleted file mode 100644 index 8c4694b3..00000000 --- a/data/test_data/2plane2chan/suite2p/plane1/Fneu.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 239f430c30b2299fa67c60328e5ff64f -outs: -- md5: 0d22f22c9444059e92c47bfd9c5f036c - path: Fneu.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane1/Fneu_chan2.npy.dvc b/data/test_data/2plane2chan/suite2p/plane1/Fneu_chan2.npy.dvc deleted file mode 100644 index 834a34a0..00000000 --- a/data/test_data/2plane2chan/suite2p/plane1/Fneu_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 6d8a19613c268f486c5ee96f485c02f5 -outs: -- md5: f605ba81d4800a58658a32babfcab9ff - path: Fneu_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane1/iscell.npy.dvc b/data/test_data/2plane2chan/suite2p/plane1/iscell.npy.dvc deleted file mode 100644 index b44eeac7..00000000 --- a/data/test_data/2plane2chan/suite2p/plane1/iscell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 66017885b13d83ef160b0c55d143d4d6 -outs: -- md5: 94cb5971d2f8c8f15213820a9210d702 - path: iscell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane1/ops.npy.dvc b/data/test_data/2plane2chan/suite2p/plane1/ops.npy.dvc deleted file mode 100644 index 77ea14b1..00000000 --- a/data/test_data/2plane2chan/suite2p/plane1/ops.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 3b5f115e549f32051cb5a86864456e19 -outs: -- md5: f4392b90fd2d82bf433493799c915185 - path: ops.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane1/redcell.npy.dvc b/data/test_data/2plane2chan/suite2p/plane1/redcell.npy.dvc deleted file mode 100644 index c6f705e1..00000000 --- a/data/test_data/2plane2chan/suite2p/plane1/redcell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 8bbc97995d880445d660796d29dac663 -outs: -- md5: e130007598176b2e603d6b27370704bf - path: redcell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane1/spks.npy.dvc b/data/test_data/2plane2chan/suite2p/plane1/spks.npy.dvc deleted file mode 100644 index 60715e56..00000000 --- a/data/test_data/2plane2chan/suite2p/plane1/spks.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 852ec0491d8cb3a47600e9d798c3703b -outs: -- md5: 1cca00e554cf6b1c9bf08d43dce54279 - path: spks.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan/suite2p/plane1/stat.npy.dvc b/data/test_data/2plane2chan/suite2p/plane1/stat.npy.dvc deleted file mode 100644 index 646e87f5..00000000 --- a/data/test_data/2plane2chan/suite2p/plane1/stat.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 5a3470767ea5087d18055e866505d09c -outs: -- md5: c8caecfd71a82a8914d6bdb5b0c73d3c - path: stat.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/ops1.npy.dvc b/data/test_data/2plane2chan1500/suite2p/ops1.npy.dvc deleted file mode 100644 index 4cc17252..00000000 --- a/data/test_data/2plane2chan1500/suite2p/ops1.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 657ecb1a614d4ab6540124271f3de690 -outs: -- md5: 2b52b4b24840dad01a01d8ac312ed987 - path: ops1.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/F.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/F.npy.dvc deleted file mode 100644 index 35c08d54..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/F.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: fbd68768181741362fc60b83a8c71421 -outs: -- md5: 61a16e1610029b33fe4534e2c8733578 - path: F.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/F_chan2.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/F_chan2.npy.dvc deleted file mode 100644 index e388b78d..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/F_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 301ddd7c36a4d2f1e965b68b9177a9bf -outs: -- md5: 4f13e841e09463cf39d93efaf2dcb4a1 - path: F_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/Fneu.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/Fneu.npy.dvc deleted file mode 100644 index 8f6fd4b6..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/Fneu.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: a0026012f0e78ed0d26c385e5b845f8a -outs: -- md5: 092074d6127b02c7a032cac02648608d - path: Fneu.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/Fneu_chan2.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/Fneu_chan2.npy.dvc deleted file mode 100644 index 79b58a18..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/Fneu_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: c25d49eb06d95b54e4bf99da905fa300 -outs: -- md5: 7b04af2d3533ee764f162fd7f171c23d - path: Fneu_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/iscell.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/iscell.npy.dvc deleted file mode 100644 index c27e4cc8..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/iscell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 78810a0367a83b0809ca4bde82f23ce3 -outs: -- md5: 0ee2b78fd6d37bda9a54dc7036cd6e5c - path: iscell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/ops.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/ops.npy.dvc deleted file mode 100644 index e60e90a8..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/ops.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 22543a40a7a1757807babf6b3b168968 -outs: -- md5: 167f603337f13dcce22faf64640c742a - path: ops.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/redcell.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/redcell.npy.dvc deleted file mode 100644 index 87ebdebd..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/redcell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 43a1826882f27a585fa1cc88c9d467a5 -outs: -- md5: e4d13616bf3605adc552718c4bad1717 - path: redcell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/reg_tif/file000_chan0.tif.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/reg_tif/file000_chan0.tif.dvc deleted file mode 100644 index be0a902e..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/reg_tif/file000_chan0.tif.dvc +++ /dev/null @@ -1,7 +0,0 @@ -outs: -- md5: 24b9fc2855d19f49362f33aeeb30e153 - path: file000_chan0.tif - cache: true - metric: false - persist: false -md5: 19ec6610d89d890af072bcb4b55b2cd2 diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/reg_tif_chan2/file000_chan1.tif.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/reg_tif_chan2/file000_chan1.tif.dvc deleted file mode 100644 index 681de5e5..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/reg_tif_chan2/file000_chan1.tif.dvc +++ /dev/null @@ -1,7 +0,0 @@ -outs: -- md5: 6fc06ed68722994edd1b6e627edba902 - path: file000_chan1.tif - cache: true - metric: false - persist: false -md5: c91cd509db2c5a918e4dc56d3d0f2048 diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/spks.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/spks.npy.dvc deleted file mode 100644 index 696ddf2b..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/spks.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 69cee1267aac4743a52d44f3dac51cab -outs: -- md5: 2fec3b288556374f0bd2a459481eb461 - path: spks.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane0/stat.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane0/stat.npy.dvc deleted file mode 100644 index 26a76c45..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane0/stat.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 50c966460f55111de6a39f18a80ee9d8 -outs: -- md5: 76ba3c6d99382a4a1df1145c5c30ef94 - path: stat.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/F.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/F.npy.dvc deleted file mode 100644 index 2254dc30..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/F.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 22c69a9cb3a62ae4cfaff829f3efefff -outs: -- md5: b88699455061febe3b07a8ec1a51ff0c - path: F.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/F_chan2.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/F_chan2.npy.dvc deleted file mode 100644 index a5480f36..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/F_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: cee3091ac7fa171f7d9d4f5cf7667f8e -outs: -- md5: e0f9ce8de0371efa8e2447d93642ceff - path: F_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/Fneu.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/Fneu.npy.dvc deleted file mode 100644 index 8330f5a1..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/Fneu.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: bb8b93c6389d689e9d6cca36760f9b65 -outs: -- md5: 5cd6dee88a7499eaf71de0d69051055a - path: Fneu.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/Fneu_chan2.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/Fneu_chan2.npy.dvc deleted file mode 100644 index 6f5996f9..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/Fneu_chan2.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: eaff5ab87d51b094d929d0ed10b0678f -outs: -- md5: 008a5d911cc02e0ed355ec7194e1bac7 - path: Fneu_chan2.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/iscell.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/iscell.npy.dvc deleted file mode 100644 index a8f9f9ce..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/iscell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 928f089a265f156de0ab47d433771880 -outs: -- md5: fe68b0ca83aeb98eef38ccf00a63b417 - path: iscell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/ops.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/ops.npy.dvc deleted file mode 100644 index a0f4f972..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/ops.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: f884ffc2049275aadaa7b5b04888343e -outs: -- md5: 1db3400d43b4e182bc0a652bd3691e56 - path: ops.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/redcell.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/redcell.npy.dvc deleted file mode 100644 index 8ed10488..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/redcell.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: af49533a226947a81dc8dc6f57ee2996 -outs: -- md5: eb026fbf46718c06bec3e6e42e55492d - path: redcell.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/reg_tif/file000_chan0.tif.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/reg_tif/file000_chan0.tif.dvc deleted file mode 100644 index 49461c6f..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/reg_tif/file000_chan0.tif.dvc +++ /dev/null @@ -1,7 +0,0 @@ -outs: -- md5: cf9361d936a5bad86b6a7bc9ab6a6423 - path: file000_chan0.tif - cache: true - metric: false - persist: false -md5: 92ba8e0962b5fdd4877513fff910d4e7 diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/reg_tif_chan2/file000_chan1.tif.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/reg_tif_chan2/file000_chan1.tif.dvc deleted file mode 100644 index e1f627bb..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/reg_tif_chan2/file000_chan1.tif.dvc +++ /dev/null @@ -1,7 +0,0 @@ -outs: -- md5: 5dfe9b849e29d0c364847d32679ac1fe - path: file000_chan1.tif - cache: true - metric: false - persist: false -md5: d1f9e49243205610a753248b3f94a1b9 diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/spks.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/spks.npy.dvc deleted file mode 100644 index cd78fe45..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/spks.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 02706b2f68d7129d9ce3459dfadc44a6 -outs: -- md5: 5839f24c3057f79b495dfe7be24ba644 - path: spks.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/2plane2chan1500/suite2p/plane1/stat.npy.dvc b/data/test_data/2plane2chan1500/suite2p/plane1/stat.npy.dvc deleted file mode 100644 index 479d0d04..00000000 --- a/data/test_data/2plane2chan1500/suite2p/plane1/stat.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: a79858a697bbfb23f75143373ad82778 -outs: -- md5: c822049b6db7a2987ab919d392697698 - path: stat.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/classification/pre_stat.npy.dvc b/data/test_data/classification/pre_stat.npy.dvc deleted file mode 100644 index 03d7b54d..00000000 --- a/data/test_data/classification/pre_stat.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 222804786d99bbeef0d10a4c1c7c21e2 -outs: -- md5: 144484cd1e07eff62abee5f683847558 - path: pre_stat.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/detection/detect_output_1p1c0.npy.dvc b/data/test_data/detection/detect_output_1p1c0.npy.dvc deleted file mode 100644 index 864ff7c8..00000000 --- a/data/test_data/detection/detect_output_1p1c0.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 0cb8789ec5068a987cb27d8cff2b1515 -outs: -- md5: 58d29362cf4ab7ef3450dbe70f68385b - path: detect_output_1p1c0.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/detection/detect_output_2p2c0.npy.dvc b/data/test_data/detection/detect_output_2p2c0.npy.dvc deleted file mode 100644 index 45755bb4..00000000 --- a/data/test_data/detection/detect_output_2p2c0.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 29a50cca9549f174e60e6b7e7d9f5407 -outs: -- md5: d6f0f1bb1f9abd8191543a4e74246c62 - path: detect_output_2p2c0.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/detection/detect_output_2p2c1.npy.dvc b/data/test_data/detection/detect_output_2p2c1.npy.dvc deleted file mode 100644 index 4aff2ec2..00000000 --- a/data/test_data/detection/detect_output_2p2c1.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 203801255c0a2f6eebf0307e48aaf9cc -outs: -- md5: 81416ecadd0c0c29191a6f172355cd4d - path: detect_output_2p2c1.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/detection/meanImg_chan2p0.npy.dvc b/data/test_data/detection/meanImg_chan2p0.npy.dvc deleted file mode 100644 index 606a0572..00000000 --- a/data/test_data/detection/meanImg_chan2p0.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 5b9422aef421f9d4c80962df49852160 -outs: -- md5: 4715f1d85a2834e85fa4f3619588ef8a - path: meanImg_chan2p0.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/detection/meanImg_chan2p1.npy.dvc b/data/test_data/detection/meanImg_chan2p1.npy.dvc deleted file mode 100644 index f8725c92..00000000 --- a/data/test_data/detection/meanImg_chan2p1.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 6b6c9ea51effd7491654afa411cfa072 -outs: -- md5: 3b4f25de658ee8b0e7073a562b3ac04c - path: meanImg_chan2p1.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/detection/pre_registered.npy.dvc b/data/test_data/detection/pre_registered.npy.dvc deleted file mode 100644 index e8a6318e..00000000 --- a/data/test_data/detection/pre_registered.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 99ba2587d90a374ebf9797ca78a083f7 -outs: -- md5: 721039b2608ae537da91e9577633d96c - path: pre_registered.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/detection/pre_registered01.npy.dvc b/data/test_data/detection/pre_registered01.npy.dvc deleted file mode 100644 index 17002ce4..00000000 --- a/data/test_data/detection/pre_registered01.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 9440c5f295a4bf4cad4c3f8b6d568856 -outs: -- md5: 1bc65d48d14cf70d611ba56e7619f638 - path: pre_registered01.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/detection/pre_registered02.npy.dvc b/data/test_data/detection/pre_registered02.npy.dvc deleted file mode 100644 index 6cf0faed..00000000 --- a/data/test_data/detection/pre_registered02.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: a72a05da232bb5b83cc03e5366d3ec63 -outs: -- md5: 9e938c10bfe7b4e5e686df5f1be4d023 - path: pre_registered02.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/detection/pre_registered11.npy.dvc b/data/test_data/detection/pre_registered11.npy.dvc deleted file mode 100644 index 41d968c3..00000000 --- a/data/test_data/detection/pre_registered11.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 76390e0b782976e5aa48b6db5ae39a49 -outs: -- md5: 972a12cb1f7f9a879e03df7cab086fb5 - path: pre_registered11.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/detection/pre_registered12.npy.dvc b/data/test_data/detection/pre_registered12.npy.dvc deleted file mode 100644 index 538ccf29..00000000 --- a/data/test_data/detection/pre_registered12.npy.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 266854da281be5f3f81babae0fc573a8 -outs: -- md5: 2c4f7401bbcf8855d1571d67cf75b704 - path: pre_registered12.npy - cache: true - metric: false - persist: false diff --git a/data/test_data/input.h5.dvc b/data/test_data/input.h5.dvc deleted file mode 100644 index 883c0724..00000000 --- a/data/test_data/input.h5.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 1a4e4d880bceca6f1b33c5b0f70f4160 -outs: -- md5: bb3c51ad5a65a0be4ced317a509b0c55 - path: input.h5 - cache: true - metric: false - persist: false diff --git a/data/test_data/input.tif.dvc b/data/test_data/input.tif.dvc deleted file mode 100644 index d6813aad..00000000 --- a/data/test_data/input.tif.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: e4bebea55507ed038517140fe9390bf0 -outs: -- md5: ee1aeb487577308db3a5798face370d0 - path: input.tif - cache: true - metric: false - persist: false diff --git a/data/test_data/input_1500.tif.dvc b/data/test_data/input_1500.tif.dvc deleted file mode 100644 index 7a7488b4..00000000 --- a/data/test_data/input_1500.tif.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 25e913578ffc0366999ed343a497e5e7 -outs: -- md5: 9f9f809a9ebe27bcd98e65c0c999329b - path: input_1500.tif - cache: true - metric: false - persist: false diff --git a/data/test_data/registration/bidi_shift_input.tif.dvc b/data/test_data/registration/bidi_shift_input.tif.dvc deleted file mode 100644 index d98e8506..00000000 --- a/data/test_data/registration/bidi_shift_input.tif.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: c8725cd4c8c6dea5f540c764cfabb09a -outs: -- md5: 1a92a7768555f4c8b1b832de226d6cbf - path: bidi_shift_input.tif - cache: true - metric: false - persist: false diff --git a/data/test_data/registration/regression_bidi_output.tif.dvc b/data/test_data/registration/regression_bidi_output.tif.dvc deleted file mode 100644 index e5a2dd0d..00000000 --- a/data/test_data/registration/regression_bidi_output.tif.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: 9b710594dcb279c458a9a71aabb9ba13 -outs: -- md5: 4d5af1e59955f607a88ba07b9a7a549a - path: regression_bidi_output.tif - cache: true - metric: false - persist: false diff --git a/data/test_data/registration/rigid_registration_test_data.tif.dvc b/data/test_data/registration/rigid_registration_test_data.tif.dvc deleted file mode 100644 index 73f90653..00000000 --- a/data/test_data/registration/rigid_registration_test_data.tif.dvc +++ /dev/null @@ -1,7 +0,0 @@ -md5: ff32a38b0c31b1fa7a9a7b05db1c233c -outs: -- md5: 447efca40ad7aa1f343a30ca037b7167 - path: rigid_registration_test_data.tif - cache: true - metric: false - persist: false diff --git a/setup.py b/setup.py index 2f1dbc2b..03fecc3e 100644 --- a/setup.py +++ b/setup.py @@ -54,7 +54,7 @@ "mkl>=2019.3", ], "data": [ - "dvc", + "dvc>=1.1", "pydrive2", ], }, diff --git a/tests/utils.py b/tests/utils.py index 54d3e497..b11f8401 100644 --- a/tests/utils.py +++ b/tests/utils.py @@ -1,4 +1,4 @@ -"""Utility functions that can be accessed in tests via the utils fixture below.""" +"""Utility functions that can be accessed in tests via the utils fixture below. """ from pathlib import Path from tifffile import imread