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sample_dispersed_points.json
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sample_dispersed_points.json
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{
"nonBlocking": false,
"helpUrl": "https://github.com/MontpellierRessourcesImagerie/point_pattern_analysis/wiki/point_pattern_analysis",
"title": "Sample Dispersed Points Options",
"elements": {
"batch": {
"conversions": null,
"helpText": "If checked all files in the selected folder will be processed",
"defaultValue": null,
"label": "Batch ",
"type": "bool",
"sameRow": false,
"value": false,
"key": "batch",
"order": 11
},
"z-size": {
"conversions": null,
"helpText": "The voxel size in the z-dimension",
"defaultValue": 5.0,
"label": "Z-size of voxel: ",
"type": "float",
"sameRow": true,
"value": 0.3,
"key": "z-size",
"order": 6
},
"type": {
"conversions": {
"32-bit": 32,
"16-bit": 16,
"8-bit": 8
},
"helpText": "The bit-depth of the image (8, 16 or 32 bit)",
"defaultValue": "16-bit",
"label": "Type of Image: ",
"type": "choice",
"sameRow": false,
"choices": [
"8-bit",
"16-bit",
"32-bit"
],
"value": "16-bit",
"key": "type",
"order": 4
},
"number": {
"conversions": null,
"helpText": "The number of random points that will be sampled",
"defaultValue": 1000,
"label": "Number Of Samples: ",
"type": "int",
"sameRow": false,
"value": 125,
"key": "number",
"order": 8
},
"unit": {
"conversions": null,
"helpText": "The unit of the voxel size",
"defaultValue": "\u00b5m",
"label": "Unit: ",
"type": "string",
"sameRow": true,
"value": "\u00b5m",
"key": "unit",
"order": 7
},
"depth": {
"conversions": null,
"helpText": "The number of z-slices of the image",
"defaultValue": 64,
"label": "Depth Of Image: ",
"type": "int",
"sameRow": true,
"value": 32,
"key": "depth",
"order": 3
},
"number-of-images": {
"conversions": null,
"helpText": "The number of images that will be created",
"defaultValue": 100,
"label": "Number of Images: ",
"type": "int",
"sameRow": true,
"value": 10,
"key": "number-of-images",
"order": 12
},
"width": {
"conversions": null,
"helpText": "The width of the image",
"defaultValue": 512,
"label": "Width Of Image: ",
"type": "int",
"sameRow": false,
"value": 512,
"key": "width",
"order": 1
},
"xy-size": {
"conversions": null,
"helpText": "The voxel size in the xy-plane",
"defaultValue": 64,
"label": "XY-size of voxel: ",
"type": "float",
"sameRow": false,
"value": 0.067,
"key": "xy-size",
"order": 5
},
"output-folder": {
"conversions": null,
"helpText": "The folder into which the result images will be written",
"defaultValue": null,
"label": "Output Folder: ",
"type": "directory",
"sameRow": true,
"value": "/home/baecker/Documents/mri/2023/mifobio/experiments/A01-spot-detection/dispersed/",
"key": "output-folder",
"order": 12
},
"max.-dist.": {
"conversions": null,
"helpText": "The maximal distance of a point from the closest grid-point",
"defaultValue": 30.0,
"label": "Max.-Dist. from grid: ",
"type": "float",
"sameRow": false,
"value": 5.0,
"key": "max.-dist.",
"order": 9
},
"height": {
"conversions": null,
"helpText": "The height of the image",
"defaultValue": 512,
"label": "Height Of Image: ",
"type": "int",
"sameRow": true,
"value": 512,
"key": "height",
"order": 2
},
"mask": {
"conversions": null,
"helpText": "The mask defining the region in which the points will be sampled",
"defaultValue": null,
"label": "Mask: ",
"type": "image-choice",
"sameRow": false,
"value": null,
"key": "mask",
"order": 10
}
}
}