diff --git a/paper/basic_training.bib b/paper/basic_training.bib index 2ce5fb8..83a653b 100644 --- a/paper/basic_training.bib +++ b/paper/basic_training.bib @@ -1105,7 +1105,9 @@ @article{Grossfield:2019:LivingJ.Comput.Mol.Sci. journal = {Living Journal of Computational Molecular Science}, author = {Grossfield, Alan and Patrone, Paul N and Roe, Daniel R and Schultz, Andrew J and Siderius, Daniel W and Zuckerman, Daniel M}, year = {2019}, - pages = {24}, + volume = {1}, + issue = {1}, + pages = {5067}, } diff --git a/paper/basic_training.pdf b/paper/basic_training.pdf index a0598d3..e6ae111 100644 Binary files a/paper/basic_training.pdf and b/paper/basic_training.pdf differ diff --git a/paper/basic_training.tex b/paper/basic_training.tex index 468a423..f5ec5ca 100644 --- a/paper/basic_training.tex +++ b/paper/basic_training.tex @@ -65,6 +65,15 @@ \corr{samarjeet@jhmi.edu}{SP} \corr{zuckermd@ohsu.edu}{DMZ} +\orcid{Efrem Braun}{0000-0001-5379-7031} +\orcid{Justin Gilmer}{0000-0002-6915-5591} +\orcid{Heather B. Mayes}{0000-0002-6915-5591} +\orcid{David L. Mobley}{0000-0002-6915-5591} +\orcid{Jacob I. Monroe}{0000-0002-7654-2856} +\orcid{Samarjeet Prasad}{0000-0001-8320-6482} +\orcid{Daniel M. Zuckerman}{0000-0001-7662-2031} + + \blurb{This LiveCoMS document is maintained online on GitHub at \githubrepository; to provide feedback, suggestions, or help improve it, please @@ -77,10 +86,11 @@ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \pubDOI{10.33011/livecoms.1.1.5957} \pubvolume{1} - \pubyear{} - \articlenum{} - \datereceived{August 2, 2018} - \dateaccepted{November 9, 2018} + \pubissue{1} + \pubyear{2019} + \articlenum{5957} + \datereceived{2 August 2018} + \dateaccepted{9 November 2018} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%% ARTICLE START @@ -1264,6 +1274,8 @@ \section{Conclusions} Please remember that this is an updatable work, so we welcome contributions and suggestions via our GitHub issue tracker at \url{https://github.com/MobleyLab/basic_simulation_training}. +\section*{Author Information} +\makeorcid \nocite{*} diff --git a/paper/livecoms.cls b/paper/livecoms.cls index 24f9c3b..9984710 100644 --- a/paper/livecoms.cls +++ b/paper/livecoms.cls @@ -49,6 +49,9 @@ \newif\if@pubversion \DeclareOption{pubversion}{\@pubversiontrue} +\newif\if@ASAPversion +\DeclareOption{ASAPversion}{\@ASAPversiontrue} + %% Linespacing. \newif\if@onehalfspacing \newif\if@doublespacing @@ -247,6 +250,9 @@ \newcommand{\pubvolume}[1]{% \appto{\@publishedvolume}{#1}{}{} } +\newcommand{\pubissue}[1]{% + \appto{\@publishedissue}{#1}{}{} +} \newcommand{\pubyear}[1]{% \appto{\@publishedyear}{#1}{}{} } @@ -260,24 +266,42 @@ \appto{\@publisheddateaccepted}{#1}{}{} } +%-------------------------------------------------------- % Footers +% 1. Error Check for conflicting class options \if@pubversion -\lfoot{\ifthenelse{\value{page}=1} - {\small\color{LiveCoMSMediumGrey}Received: \@publisheddatereceived \\ Accepted: \@publisheddateaccepted} - {~\\~} -}% -%\lfoot{\small\color{LiveCoMSMediumGrey}Received: \@publisheddatereceived \\ -% Accepted: \@publisheddateaccepted}% -\cfoot{\small\color{white} \vspace{\baselineskip} \small\color{LiveCoMSMediumGrey} \thepage\space of\space\pageref{LastPage}}% -\rfoot{\small\color{LiveCoMSMediumGrey}\href{https://doi.org/\@publishedDOI}{https://doi.org/\@publishedDOI}\\ - {\it Living J. Comp. Mol. Sci.} \@publishedyear, \@publishedvolume, \@publishedarticlenum }% -\else -\cfoot{\small\color{white} \vspace{\baselineskip} \small\color{LiveCoMSMediumGrey} \thepage\space of\space\pageref{LastPage}}% -%\rfoot{\small\color{LiveCoMSMediumGrey}Page \thepage\space of\space\pageref{LastPage}}% + \if@ASAPversion + \ClassError{livecoms} + {Nope nope nope, you cannot invoke 'pubversion' and 'ASAPversion' simultaneously. Please correct the class options.} + \fi +\fi +% 2. Publication Version: put submission/acceptance dates in left footer and citation information in right footer +%%% DWS NOTE: would be nice if the left footer was in an if A-or-B type logical statement +\if@pubversion + \lfoot{\ifthenelse{\value{page}=1} + {\small\color{LiveCoMSMediumGrey}Received: \@publisheddatereceived \\ Accepted: \@publisheddateaccepted} + {~\\~} + }% + \rfoot{\small\color{LiveCoMSMediumGrey}\href{https://doi.org/\@publishedDOI}{https://doi.org/\@publishedDOI}\\ + {\it Living J. Comp. Mol. Sci.} \@publishedyear, \@publishedvolume\nobreak\hspace{.05em}(\@publishedissue), \@publishedarticlenum + }% +\fi +% 3. ASAP Version: put submission/acceptance dates in left footer and "ASAP Version" in right footer +\if@ASAPversion + \lfoot{\ifthenelse{\value{page}=1} + {\small\color{LiveCoMSMediumGrey}Received: \@publisheddatereceived \\ Accepted: \@publisheddateaccepted} + {~\\~} + }% + \rfoot{\small\color{LiveCoMSMediumGrey}\href{https://doi.org/\@publishedDOI}{https://doi.org/\@publishedDOI}\\ + {\it Living J. Comp. Mol. Sci.} ASAP Version + }% \fi +% 4. Page Number in center of footer +\cfoot{\small\color{white} \vspace{\baselineskip} \small\color{LiveCoMSMediumGrey} \thepage\space of\space\pageref{LastPage}}% \preto{\footrule}{\color{LiveCoMSMediumGrey}} \renewcommand{\headrulewidth}{0pt}% % No header rule \renewcommand{\footrulewidth}{0.4pt}% % No footer rule +%---------------------------------------------------------- % % section/subsection/paragraph set-up @@ -319,6 +343,7 @@ \def\@deceased{} % Added blurb for LiveComs \def\@blurb{} +\def\@orcidblock{} \newcommand{\corr}[2]{% @@ -349,6 +374,16 @@ % Added for LiveComs \newcommand{\blurb}[1]{\def\@blurb{#1}} +\newcommand{\orcid}[2]{% + \ifx\empty\@orcidblock\else\appto{\@orcidblock}{\\}{}{}\fi + \appto{\@orcidblock}{% + #1:\space% + \ifx\empty#2\else\href{https://orcid.org/#2}{#2} \fi + }{}{}% +} + + + \reversemarginpar % @@ -380,7 +415,7 @@ %% Abstract outside frontmatter will throw an error! \RenewEnviron{abstract}{% - \ClassError{livecome} + \ClassError{livecoms} {Nope nope nope, please put the abstract inside the frontmatter environment.} {Please put the abstract inside the frontmatter environment.} } @@ -422,6 +457,12 @@ \vskip8pt } +\newcommand{\makeorcid}{% + % \textbf{*For correspondence:\\} \@correspondence\par + % \textbf{ORCID:\\} \@correspondence\par + \textbf{ORCID:\\} \@orcidblock\par +} + %% Insert a grey line to separate floats from main text \newcommand{\topfigrule}{\vskip8pt\noindent{\rule{\linewidth}{1pt}}} \newcommand{\botfigrule}{\noindent{\rule{\linewidth}{1pt}}\vskip8pt} diff --git a/releases/LiveCoMS_Article_V1.0.pdf b/releases/LiveCoMS_Article_ASAP_V1.pdf similarity index 100% rename from releases/LiveCoMS_Article_V1.0.pdf rename to releases/LiveCoMS_Article_ASAP_V1.pdf diff --git a/releases/LiveCoMS_Article_VV1.pdf b/releases/LiveCoMS_Article_VV1.pdf new file mode 100644 index 0000000..e6ae111 Binary files /dev/null and b/releases/LiveCoMS_Article_VV1.pdf differ