From 0df37ea62ea71697da8118daae6634e376974e91 Mon Sep 17 00:00:00 2001
From: Reno <singularitti@outlook.com>
Date: Sat, 13 Aug 2022 04:17:44 -0400
Subject: [PATCH 1/5] Rename command `print` to `show`

See https://github.com/comonicon/Comonicon.jl/issues/218
---
 src/ExpressCommands.jl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/ExpressCommands.jl b/src/ExpressCommands.jl
index a1bf8a7..08971c3 100644
--- a/src/ExpressCommands.jl
+++ b/src/ExpressCommands.jl
@@ -19,7 +19,7 @@ Print the `file` in a pretty format.
 
 - `file`: the file to be printed. Available extensions are `.jld2`, `.json`, `.yaml`, `.yml` or `.toml`.
 """
-@cast function print(file)
+@cast function show(file)
     ext = lowercase(extension(file))
     if ext == "jls"
         pprint(deserialize(file))

From 4357124ac00073efdfeab26c8c89495911f4d5e5 Mon Sep 17 00:00:00 2001
From: Reno <singularitti@outlook.com>
Date: Sat, 13 Aug 2022 04:17:59 -0400
Subject: [PATCH 2/5] Deprecate showing `jls` files in `show`

---
 src/ExpressCommands.jl | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/src/ExpressCommands.jl b/src/ExpressCommands.jl
index 08971c3..536d410 100644
--- a/src/ExpressCommands.jl
+++ b/src/ExpressCommands.jl
@@ -21,9 +21,7 @@ Print the `file` in a pretty format.
 """
 @cast function show(file)
     ext = lowercase(extension(file))
-    if ext == "jls"
-        pprint(deserialize(file))
-    elseif ext == "jld2"
+    if ext == "jld2"
         pprint(JLD2.load(file))
     elseif ext in ("json", "yaml", "yml", "toml")
         data = load(file)

From 32964ac238651b801fdf8455056998fbfe3b524a Mon Sep 17 00:00:00 2001
From: Reno <singularitti@outlook.com>
Date: Sat, 13 Aug 2022 04:20:05 -0400
Subject: [PATCH 3/5] Deprecate using `jls` in `EOS.plot`

---
 src/EOS.jl | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/EOS.jl b/src/EOS.jl
index 19ba78d..08579bf 100644
--- a/src/EOS.jl
+++ b/src/EOS.jl
@@ -6,8 +6,8 @@ using EquationOfStateRecipes
 using EquationsOfStateOfSolids: Parameters, EquationOfStateOfSolids, EnergyEquation
 using Express.EquationOfStateWorkflow: Scf, VcOptim, FitEos, buildjob
 using Express.EquationOfStateWorkflow.Recipes: buildworkflow
+import JLD2
 using QuantumESPRESSOExpress
-using Serialization: deserialize
 using SimpleWorkflows: run!, getresult
 import Plots
 # using ..ExpressCommands: @load_plugin
@@ -40,10 +40,10 @@ Plot an equation of state from `file` to file "out".
 
 # Args
 
-- `file`: a `.jls` file that saves the equation of state.
+- `file`: a `.jld2` file that saves the equation of state.
 """
 @cast function plot(file)
-    data = deserialize(file)
+    data = JLD2.load(file)
     for (key, value) in data
         if value isa Parameters
             eos = EnergyEquation(value)

From 8b64136a325f4d08c37c9b54fb1a35e7675a5317 Mon Sep 17 00:00:00 2001
From: Reno <singularitti@outlook.com>
Date: Sat, 13 Aug 2022 04:20:25 -0400
Subject: [PATCH 4/5] Remove unused `deserialize`

---
 src/ExpressCommands.jl | 1 -
 1 file changed, 1 deletion(-)

diff --git a/src/ExpressCommands.jl b/src/ExpressCommands.jl
index 536d410..da9853b 100644
--- a/src/ExpressCommands.jl
+++ b/src/ExpressCommands.jl
@@ -7,7 +7,6 @@ import JLD2
 using Pkg: add, rm, gc, @pkg_str
 using Preferences: @set_preferences!, @load_preference
 using PrettyPrint: pprint
-using Serialization: deserialize
 using SimpleWorkflows: Workflow
 import TikzGraphs
 import TikzPictures

From 0bf7d395d14c62135a23c78f0c26f8d13b94741a Mon Sep 17 00:00:00 2001
From: Reno <singularitti@outlook.com>
Date: Sat, 13 Aug 2022 04:21:14 -0400
Subject: [PATCH 5/5] Remove stdlib `Serialization` from deps

---
 Project.toml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/Project.toml b/Project.toml
index 0c74d56..5919ac4 100644
--- a/Project.toml
+++ b/Project.toml
@@ -15,7 +15,6 @@ Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 Preferences = "21216c6a-2e73-6563-6e65-726566657250"
 PrettyPrint = "8162dcfd-2161-5ef2-ae6c-7681170c5f98"
 QuantumESPRESSOExpress = "524a00d3-5d12-4323-9774-d2c11dc9d82e"
-Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 SimpleWorkflows = "6a97d125-85da-4b66-b300-4bba10360563"
 TikzGraphs = "b4f28e30-c73f-5eaf-a395-8a9db949a742"
 TikzPictures = "37f6aa50-8035-52d0-81c2-5a1d08754b2d"