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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]

[v4.0.2] - 2019-04-17 - Tortuosity Histogram Bugfix

Added

  • Utils (calculateProbabilityHist) - Added new overloaded function definition that allows users to specify the bin positions
  • test/test.cpp (CalculateProbabilityHistTests) - Added series of test for the new calculateProbabilityHist function with specified bin positions

Changed

  • .travis.yml - Extended copyright statement to 2019
  • Doxyfile - Updated project version to v4.0.2
  • docs - Updated documentation using updated Doxygen 1.8.15
  • LICENSE - Extended copyright statement to 2019
  • Lattice - Extended copyright statements to 2019
  • main.cpp - Extended copyright statement to 2019
  • main.cpp - Reduced the tortuosity histogram bin size from 0.02 to 0.01 to produce higher resolution data
  • Morphology - Extended copyright statements to 2019
  • Parameters - Extended copyright statements to 2019
  • Utils - Extended copyright statements to 2019
  • Utils (calculateProbabilityHist) - Refactored functions to use data vector size for normalization instead of unnecessarily counting
  • Version - Extended copyright statements to 2019
  • Version - Updated Current_version namespace variable to v4.0.02
  • test/test.cpp - Extended copyright statement to 2019
  • test/test_mpi.cpp - Extended copyright statement to 2019

Fixed

  • main.cpp - Tortuosity histogram output so that the data from the first bin is now correctly output to the data file
  • README.md - Current status section to show latest stable release badge

[v4.0.1] - 2018-12-12 - Tomogram Import Bugfix

Added

  • README.md - Link to JOSS paper
  • Morphology (executeIsingSwapping) - Cast return of distance function to an int to prevent compiler warning
  • Morphology (importTomogramMorphologyFile) - Cast return of ifstream's tellg function to an int to prevent compiler warning
  • Utils (vector_which_median) - Cast return of distance function to int to prevent compiler warning

Changed

  • Doxyfile - Updated file input and output paths to relative paths
  • Version - Updated Current_version namespace variable to v4.0.1
  • Updated Doxygen documentation
  • Morphology (calculatePathDistances) - Moved declaration of local z variable near it's first use to prevent potential conflict with other z variable used in a subsequent loop
  • main.cpp (main) - Imported morphology filenames now use main's reusable filename string variable

Fixed

  • Morphology (importTomogramMorphologyFile) - Corrected error loading xml metadata files on Windows by telling the fopen function to open the file as a binary file
  • Morphology (importTomogramMorphologyFile) - Corrected miscalculation of the extracted sublattice dimensions that was causing some tomogram files not to be imported
  • Parameters (importParameters) - Corrected problem importing the Mixed_frac parameter from the parameter file as an integer instead of a double

[v4.0.0] - 2018-11-29 - Final Release

This release only changes documentation files and does not contain modifications to the source code.

Added

  • CONTRIBUTING.md - New file with instructions for how others can contribute to the project
  • README.md - Link to new CONTRIBUTING file
  • CHANGELOG.md - New file detailing the changes for each release
  • README.md - Link to new CHANGELOG file
  • papers/v4_paper/paper.bib - Several missing reference entries
  • papers/v4_paper/paper.md - Acknowledgement of Dr. Andrew A. Herzing for TEM tomo data

Changed

  • README.md - Current release status to note that v4.0 is now stable
  • papers/v4_paper/paper.md - Image alt text to be more descriptive
  • papers/v4_paper/paper.md - Formating of plus signs using \texttt command
  • Version.cpp - Current_version namespace variable to v4.0.0
  • Doxyfile - updated the version number to v4.0.0
  • docs - generated updated Doxygen documentation

Fixed

  • README.md - Instructions for running the MPI tests
  • papers/v4_paper/paper.md - Problem with underscore by adding a backslash