From 049c78b1f50622efe9b670b69e0b5cc8d2e561eb Mon Sep 17 00:00:00 2001
From: famosab <famke.baeuerle@gmail.com>
Date: Wed, 2 Nov 2022 14:18:13 +0100
Subject: [PATCH] feat: example on how to integrate some tests from Memote #3

---
 runner.py       |  4 +++-
 tests/memote.py | 17 +++++++++++++++++
 2 files changed, 20 insertions(+), 1 deletion(-)
 create mode 100644 tests/memote.py

diff --git a/runner.py b/runner.py
index be9ff20..573b733 100644
--- a/runner.py
+++ b/runner.py
@@ -3,6 +3,7 @@
 from os import environ
 import tests.cobra
 import tests.yaml
+import tests.memote
 
 API_ENDPOINT = 'https://api.github.com/graphql'
 API_TOKEN = environ['GH_TOKEN']
@@ -89,9 +90,10 @@ def validate(nameWithOwner):
                         file.write(response.text)
                 test_results.update(tests.yaml.validate(model))
                 test_results.update(tests.cobra.validate(model))
+                test_results.update(tests.memote.get_consistency(model))
             else:
                 print('is not following standard')
             release_data = { 'standard-GEM' : [ { standard_version : gem_is_standard }, { 'test_results' : test_results} ] }
         data[nameWithOwner].append({ model_release: release_data })
     with open('results/{}_{}.json'.format(owner, model), 'w') as output:
-        output.write(json.dumps(data, indent=2, sort_keys=True))
+        output.write(json.dumps(data, indent=2, sort_keys=True))
\ No newline at end of file
diff --git a/tests/memote.py b/tests/memote.py
new file mode 100644
index 0000000..78f9917
--- /dev/null
+++ b/tests/memote.py
@@ -0,0 +1,17 @@
+import memote
+import cobra
+import json
+from memote.support import consistency
+# needed by memote.support.consitency
+from memote.support import consistency_helpers as con_helpers
+
+def get_consistency(model_filename):
+    try:
+        model = cobra.io.read_sbml_model(model_filename + '.xml')
+    except Exception as e:
+        errors = json.dumps(str(e))
+        print(e)
+        
+    is_consistent = consistency.check_stoichiometric_consistency(model)
+    
+    return {'memote-tests': { memote.__version__ : is_consistent, 'errors': errors } }
\ No newline at end of file