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@MesserLab

Messer Lab

The lab of Philipp Messer at Cornell University

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  1. SLiM SLiM Public

    SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platf…

    C++ 164 33

  2. SLiM-Extras SLiM-Extras Public

    Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself

    Jupyter Notebook 42 15

  3. asymptoticMK asymptoticMK Public

    A web-based tool for estimating alpha, the fraction of nucleotide substitutions in a given genomic region that were driven to fixation by positive selection.

    R 6 1

  4. ResourceExplicitModels ResourceExplicitModels Public

    Models and data for "Resource-Explicit Interaction Models for Spatial Populations"

    Slim 6

  5. GeneDriveForSuppressionOfInvasiveRodents GeneDriveForSuppressionOfInvasiveRodents Public

    Files and data to accompany "Modeling CRISPR gene drives for suppression of invasive rodents".

    Python 3 1

  6. evolve-resequence-simulation evolve-resequence-simulation Public

    A customizable tool for simulation of evolve and resequence experiments on a quantitative trait

    R 2 3

Repositories

Showing 10 of 22 repositories
  • SLiM Public

    SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.

    MesserLab/SLiM’s past year of commit activity
    C++ 164 GPL-3.0 33 26 (7 issues need help) 3 Updated Nov 26, 2024
  • SLiM-Extras Public

    Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself

    MesserLab/SLiM-Extras’s past year of commit activity
    Jupyter Notebook 42 15 0 0 Updated Oct 2, 2024
  • ResourceExplicitModels Public

    Models and data for "Resource-Explicit Interaction Models for Spatial Populations"

    MesserLab/ResourceExplicitModels’s past year of commit activity
    Slim 6 0 0 0 Updated Sep 10, 2024
  • SLiM-Tests Public

    Additional tests for SLiM validation and performance evaluation

    MesserLab/SLiM-Tests’s past year of commit activity
    Slim 0 1 0 0 Updated Dec 23, 2023
  • cluster-guide Public
    MesserLab/cluster-guide’s past year of commit activity
    Slim 1 0 0 0 Updated Dec 5, 2023
  • SLiM-Benchmarks Public

    Benchmarking scripts to compare single-threaded and multi-threaded SLiM performance

    MesserLab/SLiM-Benchmarks’s past year of commit activity
    Slim 1 1 0 0 Updated Aug 14, 2023
  • Chasing Public

    Data and models for "Suppression gene drive in continuous space can result in unstable persistence of both drive and wild-type alleles"

    MesserLab/Chasing’s past year of commit activity
    Slim 1 0 0 0 Updated Jan 23, 2023
  • CRISPR-Cas9-fitness-effects Public

    Files and data to accompany "Fitness effects of CRISPR endonucleases in D. melanogaster populations"

    MesserLab/CRISPR-Cas9-fitness-effects’s past year of commit activity
    R 0 0 0 0 Updated Sep 30, 2022
  • PerformanceOfAnophelesDriveCandidates Public

    Models and data to accompany "Finding the strongest gene drive: Simulations reveal unexpected performance differences between Anopheles homing suppression drive candidates".

    MesserLab/PerformanceOfAnophelesDriveCandidates’s past year of commit activity
    Slim 1 0 0 0 Updated Apr 8, 2022
  • TetheredDrives Public

    Data and code for "Experimental demonstration of tethered gene drive systems for confined population modification or suppression."

    MesserLab/TetheredDrives’s past year of commit activity
    Mathematica 0 0 0 0 Updated Apr 7, 2022
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