diff --git a/README.md b/README.md index 7196115..ac12833 100644 --- a/README.md +++ b/README.md @@ -32,6 +32,7 @@ devtools::install_github("MarioniLab/miloR", ref="devel") 2. [Milo example on mouse gastrulation dataset](https://rawcdn.githack.com/MarioniLab/miloR/7c7f906b94a73e62e36e095ddb3e3567b414144e/vignettes/milo_gastrulation.html#5_Finding_markers_of_DA_populations): this includes a demo for downstream analysis functions. 3. [Integrating miloR in scanpy/anndata workflow](https://github.com/MarioniLab/milo_analysis_2020/blob/main/notebooks/milo_in_python.ipynb) (see also [`milopy`](https://github.com/emdann/milopy) for a full workflow in python) 4. [Specifying contrasts of interest for differential abundance testing with Milo](https://bioconductor.org/packages/release/bioc/vignettes/miloR/inst/doc/milo_contrasts.html) +5. [Using a mixed effect model for dependendent samples](https://raw.githack.com/MarioniLab/miloR/devel/vignettes/milo_glmm.Rmd) ### Example work flow An example of the `Milo` work flow to get started: