From 6a2b8c8a5402acbef6f63ed36bc570a589af5445 Mon Sep 17 00:00:00 2001 From: ammarcsj <70114795+ammarcsj@users.noreply.github.com> Date: Fri, 8 Dec 2023 12:49:12 +0100 Subject: [PATCH] clean nbs --- .../03_protein_intensity_estimation.ipynb | 36 +++++++------------ nbdev_nbs/04_utils.ipynb | 26 ++++---------- nbdev_nbs/05_visualizations.ipynb | 30 +++++----------- nbdev_nbs/06_benchmarking.ipynb | 24 ++++--------- nbdev_nbs/08_tracefilter.ipynb | 16 ++------- 5 files changed, 36 insertions(+), 96 deletions(-) diff --git a/nbdev_nbs/03_protein_intensity_estimation.ipynb b/nbdev_nbs/03_protein_intensity_estimation.ipynb index 50248a5..8e2e4d9 100644 --- a/nbdev_nbs/03_protein_intensity_estimation.ipynb +++ b/nbdev_nbs/03_protein_intensity_estimation.ipynb @@ -2,7 +2,7 @@ "cells": [ { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -11,7 +11,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -47,7 +47,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -97,7 +97,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -944,7 +944,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1090,7 +1090,7 @@ }, { "cell_type": "code", - "execution_count": 18, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1312,7 +1312,7 @@ }, { "cell_type": "code", - "execution_count": 12, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1333,7 +1333,7 @@ }, { "cell_type": "code", - "execution_count": 13, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1407,7 +1407,7 @@ }, { "cell_type": "code", - "execution_count": 14, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1423,7 +1423,7 @@ }, { "cell_type": "code", - "execution_count": 15, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1501,7 +1501,7 @@ }, { "cell_type": "code", - "execution_count": 16, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1516,7 +1516,7 @@ }, { "cell_type": "code", - "execution_count": 17, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1554,18 +1554,6 @@ "display_name": "alphatemplate", "language": "python", "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.8.17" } }, "nbformat": 4, diff --git a/nbdev_nbs/04_utils.ipynb b/nbdev_nbs/04_utils.ipynb index f00d75d..4d6b7d8 100644 --- a/nbdev_nbs/04_utils.ipynb +++ b/nbdev_nbs/04_utils.ipynb @@ -14,7 +14,7 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -23,7 +23,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -116,7 +116,7 @@ }, { "cell_type": "code", - "execution_count": 48, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -170,7 +170,7 @@ }, { "cell_type": "code", - "execution_count": 49, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -191,7 +191,7 @@ }, { "cell_type": "code", - "execution_count": 50, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -252,7 +252,7 @@ }, { "cell_type": "code", - "execution_count": 51, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -338,7 +338,7 @@ }, { "cell_type": "code", - "execution_count": 52, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -580,18 +580,6 @@ "display_name": "alphatemplate", "language": "python", "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.8.17" } }, "nbformat": 4, diff --git a/nbdev_nbs/05_visualizations.ipynb b/nbdev_nbs/05_visualizations.ipynb index 8739002..b260970 100644 --- a/nbdev_nbs/05_visualizations.ipynb +++ b/nbdev_nbs/05_visualizations.ipynb @@ -18,7 +18,7 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -43,7 +43,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -64,7 +64,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -86,7 +86,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -114,7 +114,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -149,7 +149,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -161,7 +161,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -182,7 +182,7 @@ }, { "cell_type": "code", - "execution_count": 10, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -191,7 +191,7 @@ "" ] }, - "execution_count": 10, + "execution_count": null, "metadata": {}, "output_type": "execute_result" }, @@ -252,18 +252,6 @@ "display_name": "directlfq", "language": "python", "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.8.17" } }, "nbformat": 4, diff --git a/nbdev_nbs/06_benchmarking.ipynb b/nbdev_nbs/06_benchmarking.ipynb index 483123d..c656fc3 100644 --- a/nbdev_nbs/06_benchmarking.ipynb +++ b/nbdev_nbs/06_benchmarking.ipynb @@ -2,7 +2,7 @@ "cells": [ { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -18,7 +18,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -50,7 +50,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -111,7 +111,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -418,7 +418,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -436,7 +436,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -492,18 +492,6 @@ "display_name": "Python 3.8.13 ('directlfq')", "language": "python", "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.8.17" } }, "nbformat": 4, diff --git a/nbdev_nbs/08_tracefilter.ipynb b/nbdev_nbs/08_tracefilter.ipynb index db36ec0..1b43c4e 100644 --- a/nbdev_nbs/08_tracefilter.ipynb +++ b/nbdev_nbs/08_tracefilter.ipynb @@ -2,7 +2,7 @@ "cells": [ { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -140,7 +140,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -174,18 +174,6 @@ "display_name": "directlfq", "language": "python", "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.8.17" } }, "nbformat": 4,