diff --git a/doc/mammos.md b/doc/mammos.md
index de5863a..01151d3 100644
--- a/doc/mammos.md
+++ b/doc/mammos.md
@@ -2,25 +2,25 @@
 
 %HEADER Overview 
 
-%HEADER "Magnet" level=2
+%HEADER "Magnet" level=2  
 %BRANCHFIG Magnet addnodes=1 parents=0 rankdir='LR' relations=isA,hasSpatialPart,hasSpatialTile edgelabels=1 caption='A Magnet and its parts.'
 
-%% you may add options to the documentation of a branch:
-%% (default values are listed below)
-%% caption=''      %% will give "Granular Microstructure branch.
-%% terminated=1    %% whether the graph should be terminated at leaf nodes
-%% strict_leaves=1 %% whether to strictly exclude leave descendants
-%% width=0px       %% optional figure width
-%% leaves=''       %% optional leaf node names for graph termination
-%% relations='all' %% comma-separated list of relations to include
-%% edgelabels=0    %% whether to include edgelabels
-%% rankdir='BT'    %% graph direction (BT, TB, RL, LR: bottom-top, top-bottom, right-left, left-right)
-%% legend=1        %% whether to add legend
-%% namespaces=''   %% sequence of names of namespaces to be included
-%% ontologies=''   %% sequence of names of ontologies to be included
-%% addnodes=1      %% whether to add missing target nodes in relations (1: True, 0: False)
-%% parents=1       %% Adds n levels of parents to graph
+%% you may add options to the documentation of a branch:  
+%% (default values are listed below)  
+%% caption=''      %% will give "Granular Microstructure branch.  
+%% terminated=1    %% whether the graph should be terminated at leaf nodes  
+%% strict_leaves=1 %% whether to strictly exclude leave descendants  
+%% width=0px       %% optional figure width  
+%% leaves=''       %% optional leaf node names for graph termination  
+%% relations='all' %% comma-separated list of relations to include  
+%% edgelabels=0    %% whether to include edgelabels  
+%% rankdir='BT'    %% graph direction (BT, TB, RL, LR: bottom-top, top-bottom, right-left, left-right)  
+%% legend=1        %% whether to add legend  
+%% namespaces=''   %% sequence of names of namespaces to be included  
+%% ontologies=''   %% sequence of names of ontologies to be included  
+%% addnodes=1      %% whether to add missing target nodes in relations (1: True, 0: False)  
+%% parents=1       %% Adds n levels of parents to graph  
 
-%HEADER Classes level=2
-%ALL classes
+%HEADER Classes level=2  
+%ALL classes  
 
diff --git a/doc/plots.md b/doc/plots.md
index 159ffd1..3ff5826 100644
--- a/doc/plots.md
+++ b/doc/plots.md
@@ -1,28 +1,28 @@
 %% %% This file %% This is Markdown file, except of lines starting with %% will %% be stripped off. %%
 
 
-%HEADER Magnet level=2
+%HEADER Magnet level=2  
 %BRANCHFIG Magnet addnodes=1 parents=0 rankdir='LR' relations=isA,hasSpatialPart,hasSpatialTile edgelabels=1 caption='A Magnet and its parts.'
 
-%HEADER GranularStructure level=2
+%HEADER GranularStructure level=2  
 %BRANCHFIG GranularStructure addnodes=1 parents=0 rankdir='LR' relations='all' edgelabels=1 caption='A granular stuctures and its parts.'
 
-%HEADER CoercivityHc level=2
+%HEADER CoercivityHc level=2  
 %BRANCHFIG CoercivityHc addnodes=1 parents=1 rankdir='LR' relations='all' edgelabels=1 caption='Coercivity.'
 
-%% you may add options to the documentation of a branch:
-%% (default values are listed below)
-%% caption=''      %% will give "Granular Microstructure branch.
-%% terminated=1    %% whether the graph should be terminated at leaf nodes
-%% strict_leaves=1 %% whether to strictly exclude leave descendants
-%% width=0px       %% optional figure width
-%% leaves=''       %% optional leaf node names for graph termination
-%% relations='all' %% comma-separated list of relations to include
-%% edgelabels=0    %% whether to include edgelabels
-%% rankdir='BT'    %% graph direction (BT, TB, RL, LR: bottom-top, top-bottom, right-left, left-right)
-%% legend=1        %% whether to add legend
-%% namespaces=''   %% sequence of names of namespaces to be included
-%% ontologies=''   %% sequence of names of ontologies to be included
-%% addnodes=1      %% whether to add missing target nodes in relations (1: True, 0: False)
-%% parents=1       %% Adds n levels of parents to graph
+%% you may add options to the documentation of a branch:  
+%% (default values are listed below)  
+%% caption=''      %% will give "Granular Microstructure branch.  
+%% terminated=1    %% whether the graph should be terminated at leaf nodes  
+%% strict_leaves=1 %% whether to strictly exclude leave descendants  
+%% width=0px       %% optional figure width  
+%% leaves=''       %% optional leaf node names for graph termination  
+%% relations='all' %% comma-separated list of relations to include  
+%% edgelabels=0    %% whether to include edgelabels  
+%% rankdir='BT'    %% graph direction (BT, TB, RL, LR: bottom-top, top-bottom, right-left, left-right)  
+%% legend=1        %% whether to add legend  
+%% namespaces=''   %% sequence of names of namespaces to be included  
+%% ontologies=''   %% sequence of names of ontologies to be included  
+%% addnodes=1      %% whether to add missing target nodes in relations (1: True, 0: False)  
+%% parents=1       %% Adds n levels of parents to graph