neuroconda.yml

name: neuroconda_2_0
channels:
  - conda-forge
  - pypi
  - defaults
  - r
dependencies:
  - _libgcc_mutex=0.1
  - _openmp_mutex=4.5
  - _r-mutex=1.0.1
  - _tflow_select=2.3.0
  - absl-py=0.9.0
  - altair=4.0.1
  - aniso8601=8.0.0
  - appdirs=1.4.3
  - arrow=0.15.5
  - arrow-cpp=0.16.0
  - arviz=0.7.0
  - asciitree=0.3.3
  - astor=0.7.1
  - atk=2.32.0
  - attrs=19.3.0
  - aws-sdk-cpp=1.7.164
  - backcall=0.1.0
  - beautifulsoup4=4.8.2
  - binaryornot=0.4.4
  - binutils_impl_linux-64=2.34
  - binutils_linux-64=2.34
  - black=19.10b0
  - bleach=3.1.3
  - blinker=1.4
  - blosc=1.17.1
  - bokeh=2.0.0
  - boost-cpp=1.70.0
  - boto=2.49.0
  - brotli=1.0.7
  - bwidget=1.9.14
  - bzip2=1.0.8
  - c-ares=1.15.0
  - ca-certificates=2019.11.28
  - cachetools=3.1.1
  - cairo=1.16.0
  - certifi=2019.11.28
  - cffi=1.14.0
  - cftime=1.1.1.2
  - chardet=3.0.4
  - click=7.1.1
  - cloudpickle=1.3.0
  - colorcet=2.0.1
  - cookiecutter=1.7.0
  - coverage=5.0.4
  - cryptography=2.8
  - curl=7.68.0
  - cvxopt=1.2.4
  - cycler=0.10.0
  - cyrus-sasl=2.1.27
  - cython=0.29.16
  - cytoolz=0.10.1
  - dask=2.12.0
  - dask-core=2.12.0
  - dask-jobqueue=0.7.0
  - datashader=0.10.0
  - datashape=0.5.4
  - dbus=1.13.6
  - dcm2niix=1.0.20181114
  - decorator=4.4.2
  - defusedxml=0.6.0
  - deprecated=1.2.7
  - dipy=1.1.0
  - distributed=2.12.0
  - docopt=0.6.2
  - dsdp=5.8
  - entrypoints=0.3
  - etelemetry=0.1.2
  - expat=2.2.9
  - fastcache=1.1.0
  - fasteners=0.14.1
  - fftw=3.3.8
  - flask=1.1.1
  - flask-restful=0.3.8
  - font-ttf-dejavu-sans-mono=2.37
  - font-ttf-inconsolata=2.001
  - font-ttf-source-code-pro=2.030
  - font-ttf-ubuntu=0.83
  - fontconfig=2.13.1
  - fonts-anaconda=1
  - freeglut=3.0.0
  - freetype=2.10.1
  - fsleyes=0.32.3
  - fsleyes-props=1.6.7
  - fsleyes-widgets=0.8.4
  - fslpy=2.8.4
  - fsspec=0.6.3
  - future=0.18.2
  - gast=0.2.2
  - gcc_impl_linux-64=7.3.0
  - gcc_linux-64=7.3.0
  - gdk-pixbuf=2.38.2
  - geos=3.8.1
  - gettext=0.19.8.1
  - gflags=2.2.2
  - gfortran_impl_linux-64=7.3.0
  - gfortran_linux-64=7.3.0
  - git=2.26.0
  - git-annex=8.20200309
  - gitdb=4.0.2
  - gitpython=3.1.0
  - glib=2.58.3
  - glog=0.4.0
  - glpk=4.65
  - gmp=6.2.0
  - gobject-introspection=1.58.2
  - google-auth=1.11.2
  - google-auth-oauthlib=0.4.1
  - google-pasta=0.2.0
  - graphite2=1.3.13
  - graphviz=2.40.1
  - grpc-cpp=1.25.0
  - grpcio=1.27.2
  - gsl=2.5
  - gst-plugins-base=1.14.5
  - gstreamer=1.14.5
  - gtk2=2.24.31
  - gxx_impl_linux-64=7.3.0
  - gxx_linux-64=7.3.0
  - h5py=2.10.0
  - harfbuzz=2.4.0
  - hdf4=4.2.13
  - hdf5=1.10.5
  - heapdict=1.0.1
  - html5lib=1.0.1
  - httpretty=0.9.7
  - humanize=2.2.0
  - icu=58.2
  - idna=2.9
  - imageio=2.8.0
  - importlib-metadata=1.5.0
  - importlib_metadata=1.5.0
  - indexed_gzip=1.0.0
  - ipykernel=5.2.0
  - ipython=7.13.0
  - ipython_genutils=0.2.0
  - ipywidgets=7.5.1
  - iso8601=0.1.12
  - isodate=0.6.0
  - itsdangerous=1.1.0
  - jax=0.1.62
  - jaxlib=0.1.39
  - jedi=0.16.0
  - jeepney=0.4.3
  - jinja2=2.11.1
  - jinja2-time=0.2.0
  - joblib=0.14.1
  - jpeg=9c
  - jsmin=2.2.2
  - json5=0.9.0
  - jsonschema=3.2.0
  - jupyter=1.0.0
  - jupyter_client=6.1.0
  - jupyter_console=6.1.0
  - jupyter_core=4.6.3
  - jupyterlab=2.0.1
  - jupyterlab_code_formatter=1.2.2
  - jupyterlab_server=1.0.7
  - keepalive=0.5
  - keras-applications=1.0.8
  - keras-preprocessing=1.1.0
  - keyring=21.1.1
  - keyrings.alt=3.1
  - kiwisolver=1.1.0
  - krb5=1.16.4
  - ld_impl_linux-64=2.34
  - libblas=3.8.0
  - libcblas=3.8.0
  - libcurl=7.68.0
  - libedit=3.1.20170329
  - libevent=2.1.10
  - libffi=3.2.1
  - libgcc-ng=9.2.0
  - libgfortran-ng=7.3.0
  - libglu=9.0.0
  - libgomp=9.2.0
  - libgpuarray=0.7.6
  - libiconv=1.15
  - libidn2=2.3.0
  - liblapack=3.8.0
  - libllvm8=8.0.1
  - libmagic=5.36
  - libnetcdf=4.7.3
  - libntlm=1.4
  - libopenblas=0.3.9
  - libpng=1.6.37
  - libprotobuf=3.11.0
  - libsodium=1.0.17
  - libspatialindex=1.9.3
  - libssh2=1.8.2
  - libstdcxx-ng=9.2.0
  - libtiff=4.1.0
  - libtool=2.4.6
  - libunistring=0.9.10
  - libuuid=2.32.1
  - libwebp-base=1.1.0
  - libxcb=1.13
  - libxml2=2.9.9
  - libxslt=1.1.32
  - llvm-openmp=9.0.1
  - llvmlite=0.31.0
  - locket=0.2.0
  - lsof=4.89
  - lxml=4.4.1
  - lz4-c=1.8.3
  - lzo=2.10
  - make=4.3
  - mako=1.1.0
  - markdown=3.2.1
  - markupsafe=1.1.1
  - matplotlib=3.1.1
  - matplotlib-base=3.1.1
  - metis=5.1.0
  - mistune=0.8.4
  - mock=3.0.5
  - monotonic=1.5
  - more-itertools=8.2.0
  - msgpack-python=1.0.0
  - multidict=4.7.5
  - multipledispatch=0.6.0
  - mypy_extensions=0.4.3
  - nbconvert=5.6.1
  - nbformat=5.0.4
  - ncurses=6.1
  - netcdf4=1.5.3
  - networkx=2.1
  - neurdflib=5.0.1
  - nibabel=3.0.2
  - nilearn=0.6.2
  - nipype=1.5.0rc1
  - nodejs=12.4.0
  - nose=1.3.7
  - notebook=6.0.3
  - numba=0.48.0
  - numcodecs=0.6.4
  - numexpr=2.7.1
  - numpy=1.18.1
  - oauthlib=3.0.1
  - olefile=0.46
  - openjdk=8.0.192
  - openssh=7.9p1
  - openssl=1.1.1e
  - opt_einsum=3.2.0
  - packaging=20.1
  - pandas=1.0.3
  - pandoc=2.9.2
  - pandocfilters=1.4.2
  - pango=1.40.14
  - param=1.9.3
  - parquet-cpp=1.5.1
  - parso=0.6.2
  - partd=1.1.0
  - pathlib2=2.3.5
  - pathspec=0.7.0
  - patool=1.12
  - patsy=0.5.1
  - pcre=8.44
  - perl=5.26.2
  - pexpect=4.8.0
  - pickleshare=0.7.5
  - pigz=2.3.4
  - pillow=7.0.0
  - pip=20.0.2
  - pixman=0.38.0
  - pluggy=0.13.0
  - popt=1.16
  - poyo=0.5.0
  - progressbar2=3.50.0
  - prometheus_client=0.7.1
  - prompt-toolkit=3.0.4
  - prompt_toolkit=3.0.4
  - protobuf=3.11.0
  - prov=1.5.3
  - psutil=5.7.0
  - pthread-stubs=0.4
  - ptyprocess=0.6.0
  - py=1.8.1
  - pyarrow=0.16.0
  - pyasn1=0.4.8
  - pyasn1-modules=0.2.7
  - pycparser=2.20
  - pyct=0.4.6
  - pyct-core=0.4.6
  - pydicom=1.4.2
  - pydot=1.4.1
  - pydotplus=2.0.2
  - pygithub=1.43.6
  - pygments=2.6.1
  - pygpu=0.7.6
  - pyjwt=1.7.1
  - pymc3=3.8
  - pyopengl=3.1.5
  - pyopenssl=19.1.0
  - pyparsing=2.4.6
  - pypubsub=4.0.3
  - pyqt=5.6.0
  - pyrsistent=0.16.0
  - pysocks=1.7.1
  - pytables=3.6.1
  - pytest=5.4.1
  - pytest-cov=2.8.1
  - pytest-runner=5.2
  - python=3.7.6
  - python-dateutil=2.8.1
  - python-utils=2.4.0
  - python_abi=3.7
  - pytz=2019.3
  - pywavelets=1.1.1
  - pyyaml=5.3.1
  - pyzmq=19.0.0
  - qt=5.6.3
  - qtconsole=4.7.1
  - qtpy=1.9.0
  - r-abind=1.4_5
  - r-afex=0.26_0
  - r-askpass=1.1
  - r-assertthat=0.2.1
  - r-backports=1.1.5
  - r-base=3.6.1
  - r-base64enc=0.1_3
  - r-bayesfactor=0.9.12_4.2
  - r-bayesplot=1.7.1
  - r-bh=1.72.0_3
  - r-bindr=0.1.1
  - r-bindrcpp=0.2.2
  - r-bit=1.1_15.2
  - r-bit64=0.9_7
  - r-bitops=1.0_6
  - r-blob=1.2.1
  - r-boot=1.3_24
  - r-bridgesampling=1.0_0
  - r-brms=2.12.0
  - r-brobdingnag=1.2_6
  - r-broom=0.5.5
  - r-callr=3.4.2
  - r-car=3.0_7
  - r-cardata=3.0_3
  - r-caret=6.0_86
  - r-catools=1.18.0
  - r-cellranger=1.1.0
  - r-checkmate=2.0.0
  - r-class=7.3_16
  - r-cli=2.0.2
  - r-clipr=0.7.0
  - r-cluster=2.1.0
  - r-coda=0.19_3
  - r-codetools=0.2_16
  - r-colorspace=1.4_1
  - r-colourpicker=1.0
  - r-config=0.3
  - r-contfrac=1.1_12
  - r-crayon=1.3.4
  - r-crosstalk=1.1.0.1
  - r-curl=4.3
  - r-cvst=0.2_2
  - r-data.table=1.12.8
  - r-dbi=1.1.0
  - r-dbplyr=1.4.2
  - r-ddalpha=1.3.11
  - r-deoptimr=1.0_8
  - r-desc=1.2.0
  - r-desolve=1.28
  - r-digest=0.6.25
  - r-dimred=0.2.3
  - r-dplyr=0.8.5
  - r-drr=0.0.4
  - r-dt=0.13
  - r-dygraphs=1.1.1.6
  - r-ellipsis=0.3.0
  - r-elliptic=1.4_0
  - r-essentials=3.6
  - r-evaluate=0.14
  - r-fansi=0.4.1
  - r-farver=2.0.3
  - r-fastmap=1.0.1
  - r-forcats=0.5.0
  - r-foreach=1.4.8
  - r-foreign=0.8_76
  - r-forge=0.2.0
  - r-formatr=1.7
  - r-fs=1.3.2
  - r-future=1.16.0
  - r-generics=0.0.2
  - r-geometry=0.4.5
  - r-ggplot2=3.3.0
  - r-ggridges=0.5.2
  - r-gistr=0.5.0
  - r-glmnet=3.0_2
  - r-globals=0.12.5
  - r-glue=1.3.2
  - r-gower=0.2.1
  - r-gridextra=2.3
  - r-gtable=0.3.0
  - r-gtools=3.8.1
  - r-haven=2.2.0
  - r-hexbin=1.28.1
  - r-highr=0.8
  - r-hms=0.5.3
  - r-htmltools=0.4.0
  - r-htmlwidgets=1.5.1
  - r-httpuv=1.5.2
  - r-httr=1.4.1
  - r-hypergeo=1.2_13
  - r-igraph=1.2.4.2
  - r-inline=0.3.15
  - r-ipred=0.9_9
  - r-irdisplay=0.7
  - r-irkernel=1.1
  - r-isoband=0.2.0
  - r-iterators=1.0.12
  - r-jsonlite=1.6.1
  - r-kernlab=0.9_29
  - r-kernsmooth=2.23_16
  - r-knitr=1.28
  - r-labeling=0.3
  - r-later=1.0.0
  - r-lattice=0.20_40
  - r-lava=1.6.7
  - r-lavaan=0.6_5
  - r-lazyeval=0.2.2
  - r-lifecycle=0.2.0
  - r-linprog=0.9_2
  - r-listenv=0.8.0
  - r-lme4=1.1_21
  - r-lmertest=3.1_1
  - r-loo=2.2.0
  - r-lpsolve=5.6.15
  - r-lubridate=1.7.4
  - r-magic=1.5_9
  - r-magrittr=1.5
  - r-maps=3.3.0
  - r-maptools=0.9_9
  - r-markdown=1.1
  - r-mass=7.3_51.5
  - r-matrix=1.2_18
  - r-matrixmodels=0.4_1
  - r-matrixstats=0.56.0
  - r-memoise=1.1.0
  - r-mgcv=1.8_31
  - r-mime=0.9
  - r-miniui=0.1.1.1
  - r-minqa=1.2.4
  - r-mnormt=1.5_6
  - r-modelmetrics=1.2.2.2
  - r-modelr=0.1.6
  - r-mongolite=2.2.0
  - r-munsell=0.5.0
  - r-mvtnorm=1.1_0
  - r-nleqslv=3.3.2
  - r-nlme=3.1_145
  - r-nloptr=1.2.2.1
  - r-nnet=7.3_13
  - r-numderiv=2016.8_1.1
  - r-odbc=1.2.2
  - r-openssl=1.4.1
  - r-openxlsx=4.1.4
  - r-packrat=0.5.0
  - r-pbapply=1.4_2
  - r-pbdzmq=0.3_3
  - r-pbivnorm=0.6.0
  - r-pbkrtest=0.4_7
  - r-pillar=1.4.3
  - r-pkgbuild=1.0.6
  - r-pkgconfig=2.0.3
  - r-pkgload=1.0.2
  - r-pki=0.1_5.1
  - r-plogr=0.2.0
  - r-pls=2.7_2
  - r-plyr=1.8.6
  - r-praise=1.0.0
  - r-prettyunits=1.1.1
  - r-proc=1.16.2
  - r-processx=3.4.2
  - r-prodlim=2019.11.13
  - r-profvis=0.3.6
  - r-progress=1.2.2
  - r-promises=1.1.0
  - r-pryr=0.1.4
  - r-ps=1.3.2
  - r-psych=1.9.12.31
  - r-purrr=0.3.3
  - r-quantmod=0.4_16
  - r-quantreg=5.54
  - r-r.methodss3=1.8.0
  - r-r.oo=1.23.0
  - r-r.utils=2.9.2
  - r-r2d3=0.2.3
  - r-r6=2.4.1
  - r-randomforest=4.6_14
  - r-rappdirs=0.3.1
  - r-rbokeh=0.5.0
  - r-rcolorbrewer=1.1_2
  - r-rcpp=1.0.4
  - r-rcppeigen=0.3.3.7.0
  - r-rcppprogress=0.4.2
  - r-rcpproll=0.3.0
  - r-rcurl=1.98_1.1
  - r-readr=1.3.1
  - r-readxl=1.3.1
  - r-recipes=0.1.10
  - r-recommended=3.6
  - r-rematch=1.0.1
  - r-repr=1.1.0
  - r-reprex=0.3.0
  - r-reshape2=1.4.3
  - r-rio=0.5.16
  - r-rjava=0.9_12
  - r-rjdbc=0.2_8
  - r-rjsonio=1.3_1.4
  - r-rlang=0.4.5
  - r-rmarkdown=2.1
  - r-robustbase=0.93_6
  - r-rpart=4.1_15
  - r-rprojroot=1.3_2
  - r-rsconnect=0.8.16
  - r-rsqlite=2.2.0
  - r-rstan=2.19.3
  - r-rstantools=2.0.0
  - r-rstudioapi=0.11
  - r-rvest=0.3.5
  - r-scales=1.1.0
  - r-selectr=0.4_2
  - r-sfsmisc=1.1_5
  - r-shape=1.4.4
  - r-shiny=1.4.0.2
  - r-shinyjs=1.1
  - r-shinystan=2.5.0
  - r-shinythemes=1.1.2
  - r-sourcetools=0.1.7
  - r-sp=1.4_1
  - r-sparklyr=1.1.0
  - r-sparsem=1.78
  - r-spatial=7.3_11
  - r-squarem=2020.2
  - r-stanheaders=2.21.0_1
  - r-stringi=1.4.3
  - r-stringr=1.4.0
  - r-survival=3.1_11
  - r-sys=3.3
  - r-testthat=2.3.2
  - r-threejs=0.3.3
  - r-tibble=2.1.3
  - r-tidyr=1.0.2
  - r-tidyselect=1.0.0
  - r-tidyverse=1.3.0
  - r-timedate=3043.102
  - r-tinytex=0.20
  - r-ttr=0.23_6
  - r-utf8=1.1.4
  - r-uuid=0.1_4
  - r-vctrs=0.2.4
  - r-viridislite=0.3.0
  - r-whisker=0.4
  - r-withr=2.1.2
  - r-xfun=0.12
  - r-xml2=1.2.5
  - r-xtable=1.8_4
  - r-xts=0.12_0
  - r-yaml=2.2.1
  - r-zeallot=0.1.0
  - r-zip=2.0.4
  - r-zoo=1.8_7
  - rdflib=4.2.2
  - re2=2020.03.03
  - readline=8.0
  - regex=2020.2.20
  - requests=2.23.0
  - requests-oauthlib=1.2.0
  - rsa=4.0
  - rstudio=1.1.456
  - rsync=3.1.3
  - rtree=0.9.4
  - scikit-image=0.16.2
  - scikit-learn=0.22.2.post1
  - scipy=1.4.1
  - seaborn=0.10.0
  - secretstorage=3.1.2
  - sed=4.7
  - send2trash=1.5.0
  - setuptools=46.1.1
  - shapely=1.7.0
  - simplegeneric=0.8.1
  - simplejson=3.17.0
  - sip=4.18.1
  - six=1.14.0
  - smmap=3.0.1
  - snappy=1.1.8
  - sortedcontainers=2.1.0
  - soupsieve=1.9.4
  - sparqlwrapper=1.8.2
  - sphinx_rtd_theme=0.4.3
  - sqlalchemy=1.3.15
  - sqlite=3.30.1
  - statsmodels=0.11.1
  - suitesparse=5.6.0
  - svgutils=0.3.1
  - tbb=2020.1
  - tblib=1.6.0
  - tensorboard=2.1.0
  - tensorflow=2.1.0
  - tensorflow-base=2.1.0
  - tensorflow-estimator=2.1.0
  - termcolor=1.1.0
  - terminado=0.8.3
  - testpath=0.4.4
  - theano=1.0.4
  - thrift-cpp=0.12.0
  - tk=8.6.10
  - tktable=2.10
  - toml=0.10.0
  - toolz=0.10.0
  - tornado=6.0.4
  - tqdm=4.43.0
  - traitlets=4.3.3
  - traits=6.0.0
  - transforms3d=0.3.1
  - trimesh=3.6.15
  - typed-ast=1.4.1
  - typing_extensions=3.7.4.1
  - unixodbc=2.3.7
  - urllib3=1.25.7
  - vcrpy=4.0.2
  - wcwidth=0.1.8
  - webencodings=0.5.1
  - werkzeug=1.0.0
  - wheel=0.34.2
  - whichcraft=0.6.1
  - whoosh=2.7.4
  - widgetsnbextension=3.5.1
  - wrapt=1.12.1
  - wxnatpy=0.3.2
  - wxpython=4.0.6
  - xarray=0.15.0
  - xnat=0.3.22
  - xorg-fixesproto=5.0
  - xorg-inputproto=2.3.2
  - xorg-kbproto=1.0.7
  - xorg-libice=1.0.10
  - xorg-libsm=1.2.3
  - xorg-libx11=1.6.9
  - xorg-libxau=1.0.9
  - xorg-libxdmcp=1.1.3
  - xorg-libxext=1.3.4
  - xorg-libxfixes=5.0.3
  - xorg-libxi=1.7.10
  - xorg-libxpm=3.5.13
  - xorg-libxrender=0.9.10
  - xorg-libxt=1.1.5
  - xorg-renderproto=0.11.1
  - xorg-xextproto=7.3.0
  - xorg-xproto=7.0.31
  - xvfbwrapper=0.2.9
  - xz=5.2.4
  - yaml=0.2.2
  - yarl=1.3.0
  - zarr=2.4.0
  - zeromq=4.3.2
  - zict=2.0.0
  - zipp=3.1.0
  - zlib=1.2.11
  - zstd=1.4.4
  - pip:
    - bids-validator==1.4.4
    - ciftify==2.3.2.post1
    - citeproc-py==0.5.0
    - datalad==0.12.4
    - datalad-container==1.0.0
    - datalad-hirni==0.0.5
    - datalad-metalad==0.2.0
    - datalad-neuroimaging==0.3.0
    - datalad-webapp==0.2
    - git+https://github.com/jooh/Dcm2Bids@0.4.0.1
    - dcmstack==0.8.0
    - duecredit==0.8.0
    - filelock==3.0.12
    - grabbit==0.2.6
    - heudiconv==0.7.0
    - neurodocker==0.6.0
    - nistats==0.0.1b2
    - niworkflows==1.1.12
    - num2words==0.5.10
    - pathlib==1.0.1
    - pybids==0.10.2
    - pycortex==1.1.1
    - pydeface==2.0.0
    - python-xmp-toolkit==2.0.1
    - sklearn==0.0
    - templateflow==0.5.2
    - transplant==0.8.10
    - wget==3.2