LAST UPDATED: Arvid Lundervold, 2023-05-31
Code and data accompanying the paper: A.J. Lundervold, ..., A. Lundervold. "Assessment of self-reported executive function in irritable bowel syndrome using a machine learning framework" Journal of Clinical Medicine 2023;12:3771
Website: https://www.mdpi.com/2077-0383/12/11/3771
PDF Version: https://www.mdpi.com/2077-0383/12/11/3771/pdf
Overleaf Version: https://www.overleaf.com/project/64633e1ad925e61795ca94f4 (restricted access)
- 1-eda-brief.ipynb - Exploratory Data Analysis of the BRIEF-A data
- 2-ml-brief.ipynb - Analysis using Machine Learning (PyCaret 3.0)
# To clone the repository (once)
git clone [email protected]:MMIV-ML/BRIEF-IBS.git
# To install environment (once)
conda env update -f environment.yml
conda activate pycaret3
# back to (base)
conda deactivate # back to (base)
# To update the pycaret3 environment (if new versions become available):
conda update -n pycaret3 --all # To update all packages in the named environment
# To remove and reinstall the pycaret environment (if installation problems):
conda deactivate
conda env remove -n pycaret3
# <fix iinstallation>
# e.g. pip install --upgrade pycaret
# Then, recreate the conda environment pycaret3 as above:
conda env update -f environment.yml
conda activate pycaret3
## OPTIONAL: To install a jupyter kernel PYCARET3
python -m ipykernel install --user --name pycaret3 --display-name "PYCARET3"