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-d is used twice, and cluster distance overwrites blast db location
@click.option(
"-d",
"--blast_db",
default=os.environ.get("EMM_DB", DEFAULT_DB),
help="Path to EMM BLAST DB",
show_default=True,
)
@click.option(
"-d",
"--cluster-distance",
default=500,
help="Distance between cluster of matches to consider as different clusters.",
show_default=True,
)
The text was updated successfully, but these errors were encountered:
-d is used twice, and cluster distance overwrites blast db location
@click.option(
"-d",
"--blast_db",
default=os.environ.get("EMM_DB", DEFAULT_DB),
help="Path to EMM BLAST DB",
show_default=True,
)
@click.option(
"-d",
"--cluster-distance",
default=500,
help="Distance between cluster of matches to consider as different clusters.",
show_default=True,
)
The text was updated successfully, but these errors were encountered: