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List of extensions
Richard Gowers edited this page Aug 6, 2015
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MDAnalysis uses lots of extensions, below is a list of them and their readiness for Python 3
| Extension | Description | Language | Python 3 ready? |
|---|---|---|---|
| coordinates._dcd | DCD format reader | CPython | No (Cpython api changed) |
| coordinates.dcdtimeseries | Timeseries for DCD | Cpython | No (as above) |
| lib._distances | Distance calculations | C / Cython | Yes? |
| lib._distances_openmp | Parallel of above | C / Cython | Yes? |
| lib.parallel.distances | More parallel distances | Cython | Yes?? |
| lib.qcprot | RMSD via QCP | Cython | Yes? |
| lib._transformations | Coordinate transformations | C/CPython | No (Rewrite interface) |
| lib.KDTree._KDTree | KDTree for distance searches | CPP/SWIG | No |
| coordinates.xdrfile | Gromacs format reader | C/Swig | ??? |