diff --git a/package/doc/sphinx/source/documentation_pages/loading_files/charmm.rst b/package/doc/sphinx/source/documentation_pages/loading_files/charmm.rst index 1cfaeb5f2f6..3dfcbe32e14 100644 --- a/package/doc/sphinx/source/documentation_pages/loading_files/charmm.rst +++ b/package/doc/sphinx/source/documentation_pages/loading_files/charmm.rst @@ -17,18 +17,18 @@ PSF_ files from CHARMM, NAMD (whitespace separated) and XPLOR are supported as topology files. Both standard and extended (EXT) PSF formats are supported. Universes created from a PSF file will have the following attributes: - - ids - - atom names - - atom types - - masses - - charges - - resids - - resnames - - segids - - bonds - - angles - - dihedrals - - impropers +- ids +- atom names +- atom types +- masses +- charges +- resids +- resnames +- segids +- bonds +- angles +- dihedrals +- impropers For implementation details, see :mod:`MDAnalysis.topology.PSFParser`. diff --git a/package/doc/sphinx/source/documentation_pages/loading_files/gromacs.rst b/package/doc/sphinx/source/documentation_pages/loading_files/gromacs.rst index 5f9c25ed8f0..93d22b8d189 100644 --- a/package/doc/sphinx/source/documentation_pages/loading_files/gromacs.rst +++ b/package/doc/sphinx/source/documentation_pages/loading_files/gromacs.rst @@ -126,7 +126,7 @@ and writing XTC and TRR trajectories. Reading TRR and XTC files -^^^^^^^^^^^^^^^^^^^^^^^^^ +~~~~~~~~~~~~~~~~~~~~~~~~~ All information present in the trajectory is read and made available in the :class:`Timestep`, either as `Timestep.positions`, @@ -152,7 +152,7 @@ time point so MDAnalysis DOES WHAT? Writing TRR and XTC files -^^^^^^^^^^^^^^^^^^^^^^^^^ +~~~~~~~~~~~~~~~~~~~~~~~~~ TODO: