From a00d87fb993c3b0ab6a14ce836555debedf874d9 Mon Sep 17 00:00:00 2001 From: Lily Wang Date: Thu, 10 Oct 2019 11:53:30 +1100 Subject: [PATCH] removed autosummary --- .../generated/MDAnalysis.AtomGroup.angle.rst | 6 --- .../generated/MDAnalysis.AtomGroup.bbox.rst | 6 --- .../generated/MDAnalysis.AtomGroup.bond.rst | 6 --- .../MDAnalysis.AtomGroup.bsphere.rst | 6 --- .../generated/MDAnalysis.AtomGroup.center.rst | 6 --- ...DAnalysis.AtomGroup.center_of_geometry.rst | 6 --- .../MDAnalysis.AtomGroup.centroid.rst | 6 --- .../MDAnalysis.AtomGroup.concatenate.rst | 6 --- .../MDAnalysis.AtomGroup.difference.rst | 6 --- .../MDAnalysis.AtomGroup.dihedral.rst | 6 --- .../MDAnalysis.AtomGroup.dimensions.rst | 6 --- .../generated/MDAnalysis.AtomGroup.forces.rst | 6 --- .../MDAnalysis.AtomGroup.groupby.rst | 6 --- .../MDAnalysis.AtomGroup.guess_bonds.rst | 6 --- .../MDAnalysis.AtomGroup.improper.rst | 6 --- .../MDAnalysis.AtomGroup.intersection.rst | 6 --- .../MDAnalysis.AtomGroup.is_strict_subset.rst | 6 --- .../MDAnalysis.AtomGroup.isdisjoint.rst | 6 --- .../MDAnalysis.AtomGroup.issubset.rst | 6 --- .../MDAnalysis.AtomGroup.issuperset.rst | 6 --- .../generated/MDAnalysis.AtomGroup.ix.rst | 6 --- .../MDAnalysis.AtomGroup.ix_array.rst | 6 --- .../MDAnalysis.AtomGroup.n_atoms.rst | 6 --- .../MDAnalysis.AtomGroup.n_residues.rst | 6 --- .../MDAnalysis.AtomGroup.n_segments.rst | 6 --- .../MDAnalysis.AtomGroup.pack_into_box.rst | 6 --- .../MDAnalysis.AtomGroup.positions.rst | 6 --- .../MDAnalysis.AtomGroup.residues.rst | 6 --- .../generated/MDAnalysis.AtomGroup.rotate.rst | 6 --- .../MDAnalysis.AtomGroup.rotateby.rst | 6 --- .../MDAnalysis.AtomGroup.segments.rst | 6 --- .../MDAnalysis.AtomGroup.select_atoms.rst | 6 --- .../MDAnalysis.AtomGroup.subtract.rst | 6 --- ...nalysis.AtomGroup.symmetric_difference.rst | 6 --- .../MDAnalysis.AtomGroup.transform.rst | 6 --- .../MDAnalysis.AtomGroup.translate.rst | 6 --- .../generated/MDAnalysis.AtomGroup.ts.rst | 6 --- .../generated/MDAnalysis.AtomGroup.union.rst | 6 --- .../generated/MDAnalysis.AtomGroup.unique.rst | 6 --- .../MDAnalysis.AtomGroup.universe.rst | 6 --- .../MDAnalysis.AtomGroup.velocities.rst | 6 --- .../generated/MDAnalysis.AtomGroup.wrap.rst | 6 --- .../generated/MDAnalysis.AtomGroup.write.rst | 6 --- doc/source/generated/MDAnalysis.Merge.rst | 6 --- .../MDAnalysis.Universe.add_Residue.rst | 6 --- .../MDAnalysis.Universe.add_Segment.rst | 6 --- .../MDAnalysis.Universe.add_TopologyAttr.rst | 6 --- .../generated/MDAnalysis.Universe.angles.rst | 6 --- .../generated/MDAnalysis.Universe.bonds.rst | 6 --- .../generated/MDAnalysis.Universe.coord.rst | 6 --- .../generated/MDAnalysis.Universe.copy.rst | 6 --- .../MDAnalysis.Universe.dihedrals.rst | 6 --- .../MDAnalysis.Universe.dimensions.rst | 6 --- .../generated/MDAnalysis.Universe.empty.rst | 6 --- .../MDAnalysis.Universe.impropers.rst | 6 --- .../MDAnalysis.Universe.is_anchor.rst | 6 --- .../generated/MDAnalysis.Universe.kwargs.rst | 6 --- .../MDAnalysis.Universe.load_new.rst | 6 --- .../MDAnalysis.Universe.remove_anchor.rst | 6 --- doc/source/generated/MDAnalysis.Universe.rst | 48 ------------------- .../MDAnalysis.Universe.select_atoms.rst | 6 --- .../MDAnalysis.Universe.trajectory.rst | 6 --- ...MDAnalysis.Universe.transfer_to_memory.rst | 6 --- 63 files changed, 420 deletions(-) delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.angle.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.bbox.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.bond.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.bsphere.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.center.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.center_of_geometry.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.centroid.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.concatenate.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.difference.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.dihedral.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.dimensions.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.forces.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.groupby.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.guess_bonds.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.improper.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.intersection.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.is_strict_subset.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.isdisjoint.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.issubset.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.issuperset.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.ix.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.ix_array.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.n_atoms.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.n_residues.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.n_segments.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.pack_into_box.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.positions.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.residues.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.rotate.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.rotateby.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.segments.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.select_atoms.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.subtract.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.symmetric_difference.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.transform.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.translate.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.ts.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.union.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.unique.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.universe.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.velocities.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.wrap.rst delete mode 100644 doc/source/generated/MDAnalysis.AtomGroup.write.rst delete mode 100644 doc/source/generated/MDAnalysis.Merge.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.add_Residue.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.add_Segment.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.add_TopologyAttr.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.angles.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.bonds.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.coord.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.copy.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.dihedrals.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.dimensions.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.empty.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.impropers.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.is_anchor.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.kwargs.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.load_new.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.remove_anchor.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.select_atoms.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.trajectory.rst delete mode 100644 doc/source/generated/MDAnalysis.Universe.transfer_to_memory.rst diff --git a/doc/source/generated/MDAnalysis.AtomGroup.angle.rst b/doc/source/generated/MDAnalysis.AtomGroup.angle.rst deleted file mode 100644 index be26f01be..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.angle.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.angle -========================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.angle \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.bbox.rst b/doc/source/generated/MDAnalysis.AtomGroup.bbox.rst deleted file mode 100644 index 15ba1171a..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.bbox.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.bbox -========================= - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.bbox \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.bond.rst b/doc/source/generated/MDAnalysis.AtomGroup.bond.rst deleted file mode 100644 index 92ca3c207..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.bond.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.bond -========================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.bond \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.bsphere.rst b/doc/source/generated/MDAnalysis.AtomGroup.bsphere.rst deleted file mode 100644 index 9fc2302c8..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.bsphere.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.bsphere -============================ - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.bsphere \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.center.rst b/doc/source/generated/MDAnalysis.AtomGroup.center.rst deleted file mode 100644 index 2d17b9557..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.center.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.center -=========================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.center \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.center_of_geometry.rst b/doc/source/generated/MDAnalysis.AtomGroup.center_of_geometry.rst deleted file mode 100644 index 8643d3808..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.center_of_geometry.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.center\_of\_geometry -========================================= - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.center_of_geometry \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.centroid.rst b/doc/source/generated/MDAnalysis.AtomGroup.centroid.rst deleted file mode 100644 index db6e72ee2..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.centroid.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.centroid -============================= - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.centroid \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.concatenate.rst b/doc/source/generated/MDAnalysis.AtomGroup.concatenate.rst deleted file mode 100644 index 6de342400..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.concatenate.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.concatenate -================================ - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.concatenate \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.difference.rst b/doc/source/generated/MDAnalysis.AtomGroup.difference.rst deleted file mode 100644 index 3f1c80fa1..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.difference.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.difference -=============================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.difference \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.dihedral.rst b/doc/source/generated/MDAnalysis.AtomGroup.dihedral.rst deleted file mode 100644 index 00a81a3fd..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.dihedral.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.dihedral -============================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.dihedral \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.dimensions.rst b/doc/source/generated/MDAnalysis.AtomGroup.dimensions.rst deleted file mode 100644 index d6388d1ca..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.dimensions.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.dimensions -=============================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.dimensions \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.forces.rst b/doc/source/generated/MDAnalysis.AtomGroup.forces.rst deleted file mode 100644 index 2fe070d63..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.forces.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.forces -=========================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.forces \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.groupby.rst b/doc/source/generated/MDAnalysis.AtomGroup.groupby.rst deleted file mode 100644 index e5c214e83..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.groupby.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.groupby -============================ - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.groupby \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.guess_bonds.rst b/doc/source/generated/MDAnalysis.AtomGroup.guess_bonds.rst deleted file mode 100644 index c41b9f6d2..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.guess_bonds.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.guess\_bonds -================================= - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.guess_bonds \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.improper.rst b/doc/source/generated/MDAnalysis.AtomGroup.improper.rst deleted file mode 100644 index d142ed6cc..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.improper.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.improper -============================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.improper \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.intersection.rst b/doc/source/generated/MDAnalysis.AtomGroup.intersection.rst deleted file mode 100644 index b600cf307..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.intersection.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.intersection -================================= - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.intersection \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.is_strict_subset.rst b/doc/source/generated/MDAnalysis.AtomGroup.is_strict_subset.rst deleted file mode 100644 index e47dd097e..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.is_strict_subset.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.is\_strict\_subset -======================================= - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.is_strict_subset \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.isdisjoint.rst b/doc/source/generated/MDAnalysis.AtomGroup.isdisjoint.rst deleted file mode 100644 index dac309081..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.isdisjoint.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.isdisjoint -=============================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.isdisjoint \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.issubset.rst b/doc/source/generated/MDAnalysis.AtomGroup.issubset.rst deleted file mode 100644 index c13ee0a77..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.issubset.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.issubset -============================= - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.issubset \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.issuperset.rst b/doc/source/generated/MDAnalysis.AtomGroup.issuperset.rst deleted file mode 100644 index c216efa86..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.issuperset.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.issuperset -=============================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.issuperset \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.ix.rst b/doc/source/generated/MDAnalysis.AtomGroup.ix.rst deleted file mode 100644 index 36307baf2..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.ix.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.ix -======================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.ix \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.ix_array.rst b/doc/source/generated/MDAnalysis.AtomGroup.ix_array.rst deleted file mode 100644 index 9a6ef9885..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.ix_array.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.ix\_array -============================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.ix_array \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.n_atoms.rst b/doc/source/generated/MDAnalysis.AtomGroup.n_atoms.rst deleted file mode 100644 index 3cc149b36..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.n_atoms.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.n\_atoms -============================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.n_atoms \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.n_residues.rst b/doc/source/generated/MDAnalysis.AtomGroup.n_residues.rst deleted file mode 100644 index f4a9670a5..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.n_residues.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.n\_residues -================================ - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.n_residues \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.n_segments.rst b/doc/source/generated/MDAnalysis.AtomGroup.n_segments.rst deleted file mode 100644 index 727bbc7bf..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.n_segments.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.n\_segments -================================ - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.n_segments \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.pack_into_box.rst b/doc/source/generated/MDAnalysis.AtomGroup.pack_into_box.rst deleted file mode 100644 index 1a4d830d9..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.pack_into_box.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.pack\_into\_box -==================================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.pack_into_box \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.positions.rst b/doc/source/generated/MDAnalysis.AtomGroup.positions.rst deleted file mode 100644 index b29dc9517..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.positions.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.positions -============================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.positions \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.residues.rst b/doc/source/generated/MDAnalysis.AtomGroup.residues.rst deleted file mode 100644 index 7db0fd50d..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.residues.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.residues -============================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.residues \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.rotate.rst b/doc/source/generated/MDAnalysis.AtomGroup.rotate.rst deleted file mode 100644 index 8cea2fc0e..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.rotate.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.rotate -=========================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.rotate \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.rotateby.rst b/doc/source/generated/MDAnalysis.AtomGroup.rotateby.rst deleted file mode 100644 index 86744a0eb..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.rotateby.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.rotateby -============================= - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.rotateby \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.segments.rst b/doc/source/generated/MDAnalysis.AtomGroup.segments.rst deleted file mode 100644 index 696e11e34..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.segments.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.segments -============================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.segments \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.select_atoms.rst b/doc/source/generated/MDAnalysis.AtomGroup.select_atoms.rst deleted file mode 100644 index aa24dc118..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.select_atoms.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.select\_atoms -================================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.select_atoms \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.subtract.rst b/doc/source/generated/MDAnalysis.AtomGroup.subtract.rst deleted file mode 100644 index 5d288fe91..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.subtract.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.subtract -============================= - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.subtract \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.symmetric_difference.rst b/doc/source/generated/MDAnalysis.AtomGroup.symmetric_difference.rst deleted file mode 100644 index 14fb3721e..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.symmetric_difference.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.symmetric\_difference -========================================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.symmetric_difference \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.transform.rst b/doc/source/generated/MDAnalysis.AtomGroup.transform.rst deleted file mode 100644 index 8c9870693..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.transform.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.transform -============================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.transform \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.translate.rst b/doc/source/generated/MDAnalysis.AtomGroup.translate.rst deleted file mode 100644 index e3922c88c..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.translate.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.translate -============================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.translate \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.ts.rst b/doc/source/generated/MDAnalysis.AtomGroup.ts.rst deleted file mode 100644 index feb8b05d4..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.ts.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.ts -======================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.ts \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.union.rst b/doc/source/generated/MDAnalysis.AtomGroup.union.rst deleted file mode 100644 index f77f89bde..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.union.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.union -========================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.union \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.unique.rst b/doc/source/generated/MDAnalysis.AtomGroup.unique.rst deleted file mode 100644 index f3ab21c8f..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.unique.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.unique -=========================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.unique \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.universe.rst b/doc/source/generated/MDAnalysis.AtomGroup.universe.rst deleted file mode 100644 index de356cbed..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.universe.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.universe -============================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.universe \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.velocities.rst b/doc/source/generated/MDAnalysis.AtomGroup.velocities.rst deleted file mode 100644 index fe8917dd4..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.velocities.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.velocities -=============================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: AtomGroup.velocities \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.wrap.rst b/doc/source/generated/MDAnalysis.AtomGroup.wrap.rst deleted file mode 100644 index 697151ae3..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.wrap.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.wrap -========================= - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.wrap \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.AtomGroup.write.rst b/doc/source/generated/MDAnalysis.AtomGroup.write.rst deleted file mode 100644 index c9c7a6ab0..000000000 --- a/doc/source/generated/MDAnalysis.AtomGroup.write.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.AtomGroup.write -========================== - -.. currentmodule:: MDAnalysis - -.. automethod:: AtomGroup.write \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Merge.rst b/doc/source/generated/MDAnalysis.Merge.rst deleted file mode 100644 index aa6da2555..000000000 --- a/doc/source/generated/MDAnalysis.Merge.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Merge -================ - -.. currentmodule:: MDAnalysis - -.. autofunction:: Merge \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.add_Residue.rst b/doc/source/generated/MDAnalysis.Universe.add_Residue.rst deleted file mode 100644 index be5e22d5c..000000000 --- a/doc/source/generated/MDAnalysis.Universe.add_Residue.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.add\_Residue -================================ - -.. currentmodule:: MDAnalysis - -.. automethod:: Universe.add_Residue \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.add_Segment.rst b/doc/source/generated/MDAnalysis.Universe.add_Segment.rst deleted file mode 100644 index 2374a724c..000000000 --- a/doc/source/generated/MDAnalysis.Universe.add_Segment.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.add\_Segment -================================ - -.. currentmodule:: MDAnalysis - -.. automethod:: Universe.add_Segment \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.add_TopologyAttr.rst b/doc/source/generated/MDAnalysis.Universe.add_TopologyAttr.rst deleted file mode 100644 index 49a5f652d..000000000 --- a/doc/source/generated/MDAnalysis.Universe.add_TopologyAttr.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.add\_TopologyAttr -===================================== - -.. currentmodule:: MDAnalysis - -.. automethod:: Universe.add_TopologyAttr \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.angles.rst b/doc/source/generated/MDAnalysis.Universe.angles.rst deleted file mode 100644 index 8ec54a5d8..000000000 --- a/doc/source/generated/MDAnalysis.Universe.angles.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.angles -========================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: Universe.angles \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.bonds.rst b/doc/source/generated/MDAnalysis.Universe.bonds.rst deleted file mode 100644 index e0688b95d..000000000 --- a/doc/source/generated/MDAnalysis.Universe.bonds.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.bonds -========================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: Universe.bonds \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.coord.rst b/doc/source/generated/MDAnalysis.Universe.coord.rst deleted file mode 100644 index 654617e78..000000000 --- a/doc/source/generated/MDAnalysis.Universe.coord.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.coord -========================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: Universe.coord \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.copy.rst b/doc/source/generated/MDAnalysis.Universe.copy.rst deleted file mode 100644 index aa7104071..000000000 --- a/doc/source/generated/MDAnalysis.Universe.copy.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.copy -======================== - -.. currentmodule:: MDAnalysis - -.. automethod:: Universe.copy \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.dihedrals.rst b/doc/source/generated/MDAnalysis.Universe.dihedrals.rst deleted file mode 100644 index 4e2b613f5..000000000 --- a/doc/source/generated/MDAnalysis.Universe.dihedrals.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.dihedrals -============================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: Universe.dihedrals \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.dimensions.rst b/doc/source/generated/MDAnalysis.Universe.dimensions.rst deleted file mode 100644 index b532077ea..000000000 --- a/doc/source/generated/MDAnalysis.Universe.dimensions.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.dimensions -============================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: Universe.dimensions \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.empty.rst b/doc/source/generated/MDAnalysis.Universe.empty.rst deleted file mode 100644 index 2fb8de081..000000000 --- a/doc/source/generated/MDAnalysis.Universe.empty.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.empty -========================= - -.. currentmodule:: MDAnalysis - -.. automethod:: Universe.empty \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.impropers.rst b/doc/source/generated/MDAnalysis.Universe.impropers.rst deleted file mode 100644 index 35fa5dcbb..000000000 --- a/doc/source/generated/MDAnalysis.Universe.impropers.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.impropers -============================= - -.. currentmodule:: MDAnalysis - -.. autoproperty:: Universe.impropers \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.is_anchor.rst b/doc/source/generated/MDAnalysis.Universe.is_anchor.rst deleted file mode 100644 index b7686f10c..000000000 --- a/doc/source/generated/MDAnalysis.Universe.is_anchor.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.is\_anchor -============================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: Universe.is_anchor \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.kwargs.rst b/doc/source/generated/MDAnalysis.Universe.kwargs.rst deleted file mode 100644 index d221a6010..000000000 --- a/doc/source/generated/MDAnalysis.Universe.kwargs.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.kwargs -========================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: Universe.kwargs \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.load_new.rst b/doc/source/generated/MDAnalysis.Universe.load_new.rst deleted file mode 100644 index 03acc7c6f..000000000 --- a/doc/source/generated/MDAnalysis.Universe.load_new.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.load\_new -============================= - -.. currentmodule:: MDAnalysis - -.. automethod:: Universe.load_new \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.remove_anchor.rst b/doc/source/generated/MDAnalysis.Universe.remove_anchor.rst deleted file mode 100644 index 0b535ee9d..000000000 --- a/doc/source/generated/MDAnalysis.Universe.remove_anchor.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.remove\_anchor -================================== - -.. currentmodule:: MDAnalysis - -.. automethod:: Universe.remove_anchor \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.rst b/doc/source/generated/MDAnalysis.Universe.rst deleted file mode 100644 index 028fc763d..000000000 --- a/doc/source/generated/MDAnalysis.Universe.rst +++ /dev/null @@ -1,48 +0,0 @@ -MDAnalysis.Universe -=================== - -.. currentmodule:: MDAnalysis - -.. autoclass:: Universe - - - .. automethod:: __init__ - - - .. rubric:: Methods - - .. autosummary:: - - ~Universe.__init__ - ~Universe.add_Residue - ~Universe.add_Segment - ~Universe.add_TopologyAttr - ~Universe.copy - ~Universe.empty - ~Universe.load_new - ~Universe.make_anchor - ~Universe.remove_anchor - ~Universe.select_atoms - ~Universe.transfer_to_memory - - - - - - .. rubric:: Attributes - - .. autosummary:: - - ~Universe.anchor_name - ~Universe.angles - ~Universe.bonds - ~Universe.coord - ~Universe.dihedrals - ~Universe.dimensions - ~Universe.impropers - ~Universe.is_anchor - ~Universe.kwargs - ~Universe.trajectory - ~Universe.universe - - \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.select_atoms.rst b/doc/source/generated/MDAnalysis.Universe.select_atoms.rst deleted file mode 100644 index 67e67a884..000000000 --- a/doc/source/generated/MDAnalysis.Universe.select_atoms.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.select\_atoms -================================= - -.. currentmodule:: MDAnalysis - -.. automethod:: Universe.select_atoms \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.trajectory.rst b/doc/source/generated/MDAnalysis.Universe.trajectory.rst deleted file mode 100644 index 71183321d..000000000 --- a/doc/source/generated/MDAnalysis.Universe.trajectory.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.trajectory -============================== - -.. currentmodule:: MDAnalysis - -.. autoproperty:: Universe.trajectory \ No newline at end of file diff --git a/doc/source/generated/MDAnalysis.Universe.transfer_to_memory.rst b/doc/source/generated/MDAnalysis.Universe.transfer_to_memory.rst deleted file mode 100644 index 787004e71..000000000 --- a/doc/source/generated/MDAnalysis.Universe.transfer_to_memory.rst +++ /dev/null @@ -1,6 +0,0 @@ -MDAnalysis.Universe.transfer\_to\_memory -======================================== - -.. currentmodule:: MDAnalysis - -.. automethod:: Universe.transfer_to_memory \ No newline at end of file