diff --git a/_posts/2018-11-28-gsoc18-distancesearch.md b/_posts/2018-11-28-gsoc18-distancesearch.md index 55639bcb..77bee16c 100644 --- a/_posts/2018-11-28-gsoc18-distancesearch.md +++ b/_posts/2018-11-28-gsoc18-distancesearch.md @@ -5,7 +5,7 @@ title: "GSOC 2018: Improvements in distance search methods" We are pleased to announce another successful year of [Google Summer of Code][] with the [NumFOCUS][] organization, thanks to [Richard Gowers][] and [Jonathan Barnoud][] for mentoring the GSoC students. -This year one of the projects was [to improve the performance of pairwise distance computations][], which is used quite frequently in MDAnalysis in different forms. +This year one of the projects was [to improve the performance of pairwise distance computations][project], which is used quite frequently in MDAnalysis in different forms. MDAnalysis v0.19.0 and higher now include the _new functions [`MDAnalysis.lib.distances.capped_distance`][] and [`MDAnalysis.lib.distances.self_capped_distance`][]_ which offer a much faster way to calculate all pairwise distances up to a certain maximum distance. @@ -97,7 +97,7 @@ This was a flavor of what work was done during GSoC'18. Apart from performance i [Google Summer of Code]: https://summerofcode.withgoogle.com/projects/#5050592943144960 [NumFOCUS]: https://numfocus.org/ [Ayush Suhane]: https://github.com/ayushsuhane -[to improve the performance of pairwise distance computations]: {% post_url 2018-04-26-gsoc-students %}#ayush-suhane-improve-distance-search-methods-in-mdanalysis +[project]: {{ site.baseurl }}{% post_url 2018-04-26-gsoc-students %}#ayush-suhane-improve-distance-search-methods-in-mdanalysis [`MDAnalysis.lib.distances.capped_distance`]: https://www.mdanalysis.org/docs/documentation_pages/lib/distances.html#MDAnalysis.lib.distances.capped_distance [`MDAnalysis.lib.distances.self_capped_distance`]: https://www.mdanalysis.org/docs/documentation_pages/lib/distances.html#MDAnalysis.lib.distances.self_capped_distance [report]: https://gist.github.com/ayushsuhane/fd114cda20e93b0f61a8acb6d25d3276