diff --git a/_posts/2018-08-30-on-the-fly-transformations.md b/_posts/2020-03-06-on-the-fly-transformations.md similarity index 97% rename from _posts/2018-08-30-on-the-fly-transformations.md rename to _posts/2020-03-06-on-the-fly-transformations.md index 1064af8c..07114f81 100644 --- a/_posts/2018-08-30-on-the-fly-transformations.md +++ b/_posts/2020-03-06-on-the-fly-transformations.md @@ -41,10 +41,10 @@ shine is coupling it to a visualization widget such as ## Using MDAnalysis transformations Now it's time to learn how to use the trajectory transformations in MDAnalysis. During the following steps, we will apply some transformations on a 1 ns trajectory of a simple -19-residue peptide embeded in a 128-DMPC membrane, showing the GROMACS `trjconv` command -and the equivalent MDAnalysis code and output. To keep things lightweight, frames are -were taken every 100 ps, and water molecules were removed. This can be easily done with -MDAnalysis. +19-residue peptide embeded in a 128-DMPC membrane, showing the +[Gromacs](https://www.gromacs.org) `trjconv` command and the equivalent MDAnalysis code +and output. To keep things lightweight, frames are were taken every 100 ps, and water +molecules were removed. This can be easily done with MDAnalysis. ### Example 1: making everything whole again When performing MD simulations using periodic boundary conditions, molecules will often