From 9ce5230b2a311f09350539085b7daef863a776e7 Mon Sep 17 00:00:00 2001
From: George Chang <george.w.chang@jpl.nasa.gov>
Date: Fri, 12 May 2023 20:23:19 -0700
Subject: [PATCH 1/2] Added ISCE3 base and updated Jupyter

---
 base_images/isce3/docker/Dockerfile |  28 ++++++++
 devfiles/isce3/devfile/devfile.yaml |  95 ++++++++++++++++++++++++++++
 devfiles/isce3/devfile/jupyter.png  | Bin 0 -> 13846 bytes
 devfiles/isce3/devfile/meta.yaml    |   6 ++
 jupyterlab3/isce3/environment.yml   |  16 +++++
 5 files changed, 145 insertions(+)
 create mode 100644 base_images/isce3/docker/Dockerfile
 create mode 100644 devfiles/isce3/devfile/devfile.yaml
 create mode 100644 devfiles/isce3/devfile/jupyter.png
 create mode 100644 devfiles/isce3/devfile/meta.yaml
 create mode 100644 jupyterlab3/isce3/environment.yml

diff --git a/base_images/isce3/docker/Dockerfile b/base_images/isce3/docker/Dockerfile
new file mode 100644
index 0000000..7061089
--- /dev/null
+++ b/base_images/isce3/docker/Dockerfile
@@ -0,0 +1,28 @@
+FROM continuumio/miniconda3:22.11.1
+ENV LANG en_US.UTF-8
+ENV TZ US/Pacific
+ARG DEBIAN_FRONTEND=noninteractive
+
+# install maap-py library
+ENV MAAP_CONF='/maap-py/'
+RUN git clone --single-branch --branch master https://github.com/MAAP-Project/maap-py.git \
+    && cd maap-py \
+    && pip install -e .
+
+RUN set -ex \
+ && apt-get update
+
+RUN mkdir /projects
+WORKDIR /projects
+RUN sed -i -e 's/\/root/\/projects/g' /etc/passwd
+
+RUN conda install -y -c conda-forge mamba=1.4.2
+
+RUN mamba install -y -c conda-forge isce3=0.12.0 xarray=2023.4.2 \
+    hvplot=0.8.3 fsspec=2023.5.0 scikit-learn=1.2.2 && \
+    find /opt/conda/ -follow -type f -name '*.a' -delete && \
+    find /opt/conda/ -follow -type f -name '*.js.map' -delete && \
+    /opt/conda/bin/conda clean -afy
+
+ARG IMAGE_REF
+ENV DOCKERIMAGE_PATH=${IMAGE_REF}
diff --git a/devfiles/isce3/devfile/devfile.yaml b/devfiles/isce3/devfile/devfile.yaml
new file mode 100644
index 0000000..00221a7
--- /dev/null
+++ b/devfiles/isce3/devfile/devfile.yaml
@@ -0,0 +1,95 @@
+apiVersion: 1.0.0
+metadata:
+  generateName: isce2-
+attributes:
+  editorFree: 'true'
+components:
+  - endpoints:
+      - attributes:
+          type: ide
+          discoverable: 'false'
+          path: /
+          public: 'true'
+          protocol: http
+        name: jupyter
+        port: 3100
+    referenceContent: |
+      kind: List
+      items:
+        - apiVersion: v1
+          kind: Pod
+          metadata:
+            name: ws
+            labels:
+              ssh: enabled
+          spec:
+            volumes:
+              - name: ws-pvc
+                persistentVolumeClaim:
+                  claimName: ws
+              - name: s3fs-volume
+                emptyDir: {}
+            containers:
+              - name: jupyter
+                image: 'mas.dit.maap-project.org/root/maap-workspaces/jupyterlab3/isce3:develop'
+                imagePullPolicy: Always
+                resources:
+                  limits:
+                    memory: 8096Mi
+                volumeMounts:
+                  - name: ws-pvc
+                    mountPath: /projects
+                    subPath: projects
+                  - name: s3fs-volume
+                    mountPath: /projects/.jupyter
+                    subPath: dotjupyter
+                  - name: s3fs-volume
+                    mountPath: /projects/my-private-bucket
+                    subPath: my-private-bucket
+                    mountPropagation: HostToContainer
+                  - name: s3fs-volume
+                    mountPath: /projects/my-public-bucket
+                    subPath: my-public-bucket
+                    mountPropagation: HostToContainer
+                  - name: s3fs-volume
+                    mountPath: /projects/shared-buckets
+                    subPath: shared-buckets
+                    mountPropagation: HostToContainer
+              - name: s3fs
+                image: 'mas.ops.maap-project.org/root/che-sidecar-s3fs:master'
+                imagePullPolicy: Always
+                resources:
+                  limits:
+                    memory: 256Mi
+                securityContext:
+                  privileged: true
+                volumeMounts:
+                  - name: s3fs-volume
+                    mountPath: /my-public-bucket
+                    subPath: my-public-bucket
+                    mountPropagation: Bidirectional
+                  - name: s3fs-volume
+                    mountPath: /my-private-bucket
+                    subPath: my-private-bucket
+                    mountPropagation: Bidirectional
+                  - name: s3fs-volume
+                    mountPath: /shared-buckets
+                    subPath: shared-buckets
+                    mountPropagation: Bidirectional
+        - apiVersion: v1
+          kind: PersistentVolumeClaim
+          metadata:
+            name: ws
+          spec:
+            storageClassName: nfs-client-che
+        - apiVersion: v1
+          kind: Service
+          metadata:
+            generateName: sshport-
+          spec:
+            type: NodePort
+            ports:
+              - port: 22
+          selector:
+            ssh: enabled
+    type: kubernetes
diff --git a/devfiles/isce3/devfile/jupyter.png b/devfiles/isce3/devfile/jupyter.png
new file mode 100644
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diff --git a/devfiles/isce3/devfile/meta.yaml b/devfiles/isce3/devfile/meta.yaml
new file mode 100644
index 0000000..88ec537
--- /dev/null
+++ b/devfiles/isce3/devfile/meta.yaml
@@ -0,0 +1,6 @@
+---
+displayName: "MAAP ISCE3/PLAnT"
+description: Latest version of MAAP ISCE3
+tags: ["JupyterLab", "Python", "MAAP", "ISCE3", "PLAnT"]
+icon: /devfiles/isce3/devfile/jupyter.png
+globalMemoryLimit: 2710Mi
diff --git a/jupyterlab3/isce3/environment.yml b/jupyterlab3/isce3/environment.yml
new file mode 100644
index 0000000..ba3be7e
--- /dev/null
+++ b/jupyterlab3/isce3/environment.yml
@@ -0,0 +1,16 @@
+name: base
+channels:
+  - conda-forge
+  - nodefaults
+dependencies:
+  - gitpython=3.1.26
+  - ipyleaflet=0.17.2
+  - jupyterlab=3.6.3
+  - jupyterlab-git=0.34.2
+  - jupyter-packaging=0.12.3
+  - jupyterlab_widgets=1.0.2
+  - nodejs=16.19.0
+  - plotly=5.5.0
+  - xmltodict=0.13.0
+  - pip:
+    - jupyter-ydoc==0.2.4

From f3fc39281830460bbb920f95ac971f6a745eed76 Mon Sep 17 00:00:00 2001
From: George Chang <george.w.chang@jpl.nasa.gov>
Date: Fri, 12 May 2023 21:06:06 -0700
Subject: [PATCH 2/2] Add RTC as requested by UWG

---
 base_images/isce3/docker/Dockerfile | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/base_images/isce3/docker/Dockerfile b/base_images/isce3/docker/Dockerfile
index 7061089..e054a86 100644
--- a/base_images/isce3/docker/Dockerfile
+++ b/base_images/isce3/docker/Dockerfile
@@ -24,5 +24,7 @@ RUN mamba install -y -c conda-forge isce3=0.12.0 xarray=2023.4.2 \
     find /opt/conda/ -follow -type f -name '*.js.map' -delete && \
     /opt/conda/bin/conda clean -afy
 
+RUN pip install git+https://github.com/opera-adt/RTC.git@v0.3
+
 ARG IMAGE_REF
 ENV DOCKERIMAGE_PATH=${IMAGE_REF}