setup.py

#!/usr/bin/env python3

import io
import os
import re

from setuptools import setup, find_packages


def read(*names, **kwargs):
    with io.open(
        os.path.join(os.path.dirname(__file__), *names),
        encoding=kwargs.get("encoding", "utf8"),
    ) as fp:
        return fp.read()


def find_version(*file_paths):
    version_file = read(*file_paths)
    version_match = re.search(r"^__version__ = ['\"]([^'\"]*)['\"]", version_file, re.M)
    if version_match:
        return version_match.group(1)
    raise RuntimeError("Unable to find version string.")


setup(
    name="locuspocus",
    version=find_version("locuspocus", "__init__.py"),
    description="Genetic coordinates made easy!",
    url="http://linkage.io",
    author="Rob Schaefer",
    author_email="rob@linkage.io",
    license="Copyright Linkage Analytics 2016. Available under the MIT License",
    classifiers=[
        # How mature is this project? Common values are
        #   3 - Alpha
        #   4 - Beta
        #   5 - Production/Stable
        "Development Status :: 4 - Beta",
        # Indicate who your project is intended for
        "Intended Audience :: Developers",
        "Topic :: Software Development :: Build Tools",
        # Pick your license as you wish (should match "license" above)
        "License :: OSI Approved :: MIT License",
        # Specify the Python versions you support here. In particular, ensure
        # that you indicate whether you support Python 2, Python 3 or both.
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.8",
    ],
    keywords="data genetics biology coordinates",
    project_urls={
        "Documentation": "http://linkage.io",
        "Source": "https://github.com/LinkageIO/LocusPocus",
        "Tracker": "https://github.com/LinkageIO/LocusPocus/issues",
    },
    packages=find_packages(),
    scripts=[],
    ext_modules=[],
    cmdclass={},
    package_data={"": ["*.cyx"]},
    python_requires=">=3.7",
    setup_requires=[
        # Setuptools 18.0 properly handles Cython extensions.
        "setuptools>=18.0",
    ],
    install_requires=[
        "minus80>=2.0.0",
        "numpy>=1.14.3",
        "anytree==2.6.0",
        "scipy>=0.19.0",
    ],
    include_package_data=True,
)