snakePipes are our in-house, flexible and powerful workflows built using snakemake that simplify the analysis of NGS data.
- DNA-mapping (normal and allele-specific)
- ChIP-seq (normal and allele-specific)
- RNA-seq (normal and allele-specific)
- scRNA-seq
- Hi-C
Currently the workflows don't require installation of the scripts. Simply clone this github repository and modify the configuration files under shared/organisms and shared/paths.yaml with your own paths.
For documentation on setup and usage, please visit our read the docs page.