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environment.yaml
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environment.yaml
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name: edgecase
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- bcftools=1.9=ha228f0b_4
- bioawk=1.0=hed695b0_5
- blas=2.10=openblas
- bzip2=1.0.8=h516909a_0
- ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.11.28=py36h9f0ad1d_1
- curl=7.65.2=hf8cf82a_0
- cycler=0.10.0=py_1
- dbus=1.13.6=he372182_0
- decorator=4.4.2=py_0
- expat=2.2.5=he1b5a44_1003
- fastcluster=1.1.25=py36hb3f55d8_1000
- fontconfig=2.13.1=he4413a7_1000
- freetype=2.10.0=he983fc9_0
- gettext=0.19.8.1=hc5be6a0_1002
- glib=2.58.3=h6f030ca_1002
- gst-plugins-base=1.14.5=h0935bb2_0
- gstreamer=1.14.5=h36ae1b5_0
- hmmer=3.1b2=0
- htslib=1.9=ha228f0b_7
- icu=58.2=hf484d3e_1000
- intel-openmp=2019.4=243
- jellyfish=2.2.10=h6bb024c_1
- jemalloc=4.5.0=0
- jpeg=9c=h14c3975_1001
- kiwisolver=1.1.0=py36hc9558a2_0
- krb5=1.16.3=h05b26f9_1001
- libblas=3.8.0=10_openblas
- libcblas=3.8.0=10_openblas
- libcurl=7.65.2=hda55be3_0
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran=3.0.0=1
- libgfortran-ng=7.3.0=hdf63c60_0
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=10_openblas
- liblapacke=3.8.0=10_openblas
- libllvm8=8.0.1=hc9558a2_0
- libopenblas=0.3.6=h6e990d7_4
- libpng=1.6.37=hed695b0_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.1.0=hdf63c60_0
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_1
- llvmlite=0.30.0=py36h8b12597_1
- mkl=2019.4=243
- ncurses=6.1=hf484d3e_1002
- networkx=2.3=py_0
- numba=0.46.0=py36hb3f55d8_1
- openblas=0.3.6=h6e990d7_4
- openssl=1.1.1f=h516909a_0
- pcre=8.41=hf484d3e_1003
- pip=19.1.1=py36_0
- pthread-stubs=0.4=h14c3975_1001
- pyparsing=2.4.0=py_0
- pyqt=5.9.2=py36hcca6a23_0
- pysam=0.15.2=py36h4b7d16d_3
- python=3.6.7=h357f687_1005
- python-dateutil=2.8.0=py_0
- python_abi=3.6=1_cp36m
- pytz=2019.1=py_0
- qt=5.9.7=h52cfd70_2
- readline=8.0=hf8c457e_0
- samtools=1.9=h8571acd_11
- setuptools=41.0.1=py36_0
- sip=4.19.8=py36hf484d3e_1000
- six=1.12.0=py36_1000
- sqlite=3.29.0=hcee41ef_0
- tk=8.6.9=hed695b0_1002
- tornado=6.0.3=py36h516909a_0
- tqdm=4.7.2=py36_0
- wheel=0.33.4=py36_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xz=5.2.4=h14c3975_1001
- zlib=1.2.11=h516909a_1005
- pip:
- appdirs==1.4.3
- attrs==19.1.0
- chardet==3.0.4
- configargparse==0.14.0
- datrie==0.8
- docopt==0.6.2
- docutils==0.14
- edlib==1.3.9
- gitdb2==2.0.5
- gitpython==2.1.11
- idna==2.8
- jedi==0.14.1
- joblib==0.13.2
- jsonschema==3.0.1
- matplotlib==3.1.1
- matplotlib-venn==0.11.5
- numpy==1.16.4
- pandas==0.24.2
- parso==0.5.1
- patsy==0.5.1
- prompt-toolkit==2.0.9
- ptpython==2.0.4
- pygments==2.4.2
- pyrsistent==0.15.3
- pyyaml==5.1.1
- ratelimiter==1.2.0.post0
- regex==2019.6.8
- requests==2.22.0
- scikit-learn==0.21.2
- scipy==1.3.0
- seaborn==0.9.0
- smmap2==2.0.5
- snakemake==5.5.3
- statsmodels==0.10.0
- urllib3==1.25.3
- wcwidth==0.1.7
- wrapt==1.11.2