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ci.yml
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name: continuous-integration
on:
push:
branches:
- main
- master
- releases/*
pull_request: null
env:
CACHE_NUMBER: 0 # increase to reset cache manually
CONDA_ENV: .github/environment.yml
jobs:
build:
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
strategy:
fail-fast: false
matrix:
os: [macos-latest, ubuntu-latest]
include:
- os: macos-latest
label: osx-64
prefix: /Users/runner/miniconda3
- os: ubuntu-latest
label: linux-64
prefix: /usr/share/miniconda3
steps:
- name: Cancel previous runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- name: Checkout NaMaster repository
uses: actions/checkout@v4
- name: Set up conda
uses: conda-incubator/setup-miniconda@v3
with:
channels: conda-forge, defaults
channel-priority: strict
show-channel-urls: true
miniforge-version: latest
miniforge-variant: Mambaforge
- name: Set current date as environment variable
run: echo "TODAY=$(date +'%Y.%m.%d')" >> $GITHUB_ENV
- name: Get cached environment
uses: actions/cache@v3
id: cache
with:
path: ${{ matrix.prefix }}
key:
conda-py${{ matrix.py }}--${{
matrix.os }}--${{
hashFiles(env.CONDA_ENV) }}-${{
hashFiles('setup.py') }}--${{
env.TODAY }}-${{
env.CACHE_NUMBER }}
- name: Install environment packages
if: steps.cache.outputs.cache-hit != 'true'
run: |
export MAMBA_NO_BANNER=1 # hide mamba banner from output
mamba env update --file ${{ env.CONDA_ENV }} --prune
- name: Show installed
run: conda list
- name: conda libraries in path
run: |
ls ${CONDA_PREFIX}/lib
ls ${CONDA_PREFIX}/include
- name: Install fitsio, fftw (ubuntu)
if: matrix.label == 'linux-64'
run: |
sudo -H apt-get install libcfitsio-dev libfftw3-dev
- name: Install other dependencies (mac)
if: matrix.label == 'osx-64'
run: |
brew install fftw
# Unclear why, but we don't seem to have to install gsl
# for linux, only mac...
brew install gsl
brew install openblas
brew install libomp
brew install cfitsio
brew install autoconf
brew install automake
brew install libtool
# Annoyingly, the version of healpy that gets
# installed by pip when installing namaster seems
# to crash on mac, so we install it here instead
conda install healpy
- name: Build NaMaster (ubuntu)
if: matrix.label == 'linux-64'
run: |
python setup.py install
- name: Build NaMaster (mac)
if: matrix.label == 'osx-64'
run: |
# After migrating to Xcode 15.4, a bunch of things broke, for whatever reason...
sudo xcode-select -s "/Applications/Xcode_15.0.1.app"
# Without the prefixes, it won't compile on mac
CC=gcc-14 LDFLAGS=-L/opt/homebrew/lib CPPFLAGS=-I/opt/homebrew/include python -m pip install .
- name: C tests
run: |
make check
- name: Python tests
run: |
pytest -vv pymaster --cov=pymaster
- name: coveralls
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: |
coveralls --service=github
lint:
runs-on: ubuntu-latest
steps:
- name: Checkout CCL repository
uses: actions/checkout@v3
- name: Lint
uses: py-actions/flake8@v2
with:
args: "--config .flake8"