Add python generator for UQ models #357
Workflow file for this run
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| name: CI | |
| on: | |
| # Triggers the workflow on pull request events only for the "develop" branch | |
| pull_request: | |
| branches: [ "develop" ] | |
| workflow_dispatch: | |
| jobs: | |
| build-run-tests: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/llnl/ams-ci-almalinux8:latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Build Torch=On FAISS=On HDF5=On AMS | |
| shell: bash -l {0} | |
| run: | | |
| module load gcc/11.2.1 | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_TORCH_PATH=$(spack location -i py-torch)/lib/python3.10/site-packages/torch/share/cmake/Torch | |
| export AMS_FAISS_PATH=$(spack location -i faiss) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| export AMS_HDF5_PATH=$(spack location -i hdf5) | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=On \ | |
| -DWITH_HDF5=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DAMS_HDF5_DIR=$AMS_HDF5_PATH \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DWITH_CUDA=Off \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=On \ | |
| -DWITH_MPI=On \ | |
| -DWITH_TORCH=On \ | |
| -DWITH_TESTS=On \ | |
| -DTorch_DIR=$AMS_TORCH_PATH \ | |
| -DFAISS_DIR=$AMS_FAISS_PATH \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| -DWITH_ADIAK=On \ | |
| $GITHUB_WORKSPACE | |
| make | |
| - name: Run tests Torch=On FAISS=On HDF5=On AMS | |
| run: | | |
| cd build | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| env CTEST_OUTPUT_ON_FAILURE=1 make test | |
| - name: Build Torch=On FAISS=On HDF5=On MPI=Off AMS | |
| shell: bash -l {0} | |
| run: | | |
| module load gcc/11.2.1 | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_TORCH_PATH=$(spack location -i py-torch)/lib/python3.10/site-packages/torch/share/cmake/Torch | |
| export AMS_FAISS_PATH=$(spack location -i faiss) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| export AMS_HDF5_PATH=$(spack location -i hdf5) | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=On \ | |
| -DWITH_HDF5=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DAMS_HDF5_DIR=$AMS_HDF5_PATH \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DWITH_CUDA=Off \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=On \ | |
| -DWITH_MPI=Off \ | |
| -DWITH_TORCH=On \ | |
| -DWITH_TESTS=On \ | |
| -DTorch_DIR=$AMS_TORCH_PATH \ | |
| -DFAISS_DIR=$AMS_FAISS_PATH \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| -DWITH_ADIAK=On \ | |
| $GITHUB_WORKSPACE | |
| make | |
| - name: Build CALIPER=Off Torch=Off FAISS=On HDF5=On AMS | |
| shell: bash -l {0} | |
| run: | | |
| module load gcc/11.2.1 | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_FAISS_PATH=$(spack location -i faiss) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| export AMS_HDF5_PATH=$(spack location -i hdf5) | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=Off \ | |
| -DWITH_HDF5=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DAMS_HDF5_DIR=$AMS_HDF5_PATH \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DWITH_CUDA=Off \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=On \ | |
| -DWITH_MPI=On \ | |
| -DWITH_TORCH=Off \ | |
| -DWITH_TESTS=On \ | |
| -DFAISS_DIR=$AMS_FAISS_PATH \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| $GITHUB_WORKSPACE | |
| make | |
| - name: Build Torch=Off FAISS=On HDF5=On AMS | |
| shell: bash -l {0} | |
| run: | | |
| module load gcc/11.2.1 | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_FAISS_PATH=$(spack location -i faiss) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| export AMS_HDF5_PATH=$(spack location -i hdf5) | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=On \ | |
| -DWITH_HDF5=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DAMS_HDF5_DIR=$AMS_HDF5_PATH \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DWITH_CUDA=Off \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=On \ | |
| -DWITH_MPI=On \ | |
| -DWITH_TORCH=Off \ | |
| -DWITH_TESTS=On \ | |
| -DFAISS_DIR=$AMS_FAISS_PATH \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| -DWITH_ADIAK=On \ | |
| $GITHUB_WORKSPACE | |
| make | |
| - name: Run tests Torch=Off FAISS=On HDF5=On AMS | |
| run: | | |
| cd build | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| env CTEST_OUTPUT_ON_FAILURE=1 make test | |
| - name: Build Torch=Off FAISS=Off HDF5=On AMS | |
| shell: bash -l {0} | |
| run: | | |
| module load gcc/11.2.1 | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| export AMS_HDF5_PATH=$(spack location -i hdf5) | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DAMS_HDF5_DIR=$AMS_HDF5_PATH \ | |
| -DWITH_HDF5=On \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DWITH_CUDA=Off \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=Off \ | |
| -DWITH_MPI=On \ | |
| -DWITH_TORCH=Off \ | |
| -DWITH_TESTS=On \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| -DWITH_ADIAK=On \ | |
| $GITHUB_WORKSPACE | |
| make | |
| - name: Run tests Torch=Off FAISS=Off HDF5=On AMS | |
| run: | | |
| cd build | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| make test | |
| - name: Build Torch=Off FAISS=Off HDF5=Off AMS | |
| shell: bash -l {0} | |
| run: | | |
| module load gcc/11.2.1 | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DWITH_CUDA=Off \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=Off \ | |
| -DWITH_MPI=On \ | |
| -DWITH_TORCH=Off \ | |
| -DWITH_TESTS=On \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| -DWITH_ADIAK=Off \ | |
| $GITHUB_WORKSPACE | |
| make | |
| - name: Run tests Torch=Off FAISS=Off HDF5=Off AMS | |
| run: | | |
| cd build | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| make test | |
| build-cuda-tests: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/llnl/ams-ci-cuda11.6.1:latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Build Torch=On FAISS=On HDF5=On AMS | |
| shell: bash -l {0} | |
| run: | | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_TORCH_PATH=$(spack location -i py-torch)/lib/python3.10/site-packages/torch/share/cmake/Torch | |
| export AMS_FAISS_PATH=$(spack location -i faiss) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| export AMS_HDF5_PATH=$(spack location -i hdf5) | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=On \ | |
| -DWITH_HDF5=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DAMS_HDF5_DIR=$AMS_HDF5_PATH \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCUDA_ARCH=70 \ | |
| -DWITH_CUDA=On \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=On \ | |
| -DWITH_MPI=On \ | |
| -DWITH_TORCH=On \ | |
| -DWITH_TESTS=On \ | |
| -DTorch_DIR=$AMS_TORCH_PATH \ | |
| -DFAISS_DIR=$AMS_FAISS_PATH \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| -DWITH_ADIAK=On \ | |
| $GITHUB_WORKSPACE | |
| make | |
| - name: Build Torch=Off FAISS=On HDF5=On AMS | |
| shell: bash -l {0} | |
| run: | | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_FAISS_PATH=$(spack location -i faiss) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| export AMS_HDF5_PATH=$(spack location -i hdf5) | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=On \ | |
| -DWITH_HDF5=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DAMS_HDF5_DIR=$AMS_HDF5_PATH \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCUDA_ARCH=70 \ | |
| -DWITH_CUDA=On \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=On \ | |
| -DWITH_MPI=On \ | |
| -DWITH_TORCH=Off \ | |
| -DWITH_TESTS=On \ | |
| -DFAISS_DIR=$AMS_FAISS_PATH \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| -DWITH_ADIAK=On \ | |
| $GITHUB_WORKSPACE | |
| make | |
| - name: Build Torch=Off FAISS=Off HDF5=On AMS | |
| shell: bash -l {0} | |
| run: | | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| export AMS_HDF5_PATH=$(spack location -i hdf5) | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DAMS_HDF5_DIR=$AMS_HDF5_PATH \ | |
| -DWITH_HDF5=On \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCUDA_ARCH=70 \ | |
| -DWITH_CUDA=On \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=Off \ | |
| -DWITH_MPI=On \ | |
| -DWITH_TORCH=Off \ | |
| -DWITH_TESTS=On \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| -DWITH_ADIAK=On \ | |
| $GITHUB_WORKSPACE | |
| make | |
| - name: Build Torch=Off FAISS=Off HDF5=Off AMS | |
| shell: bash -l {0} | |
| run: | | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCUDA_ARCH=70 \ | |
| -DWITH_CUDA=On \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=Off \ | |
| -DWITH_MPI=On \ | |
| -DWITH_TORCH=Off \ | |
| -DWITH_TESTS=On \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| -DWITH_ADIAK=Off \ | |
| $GITHUB_WORKSPACE | |
| make | |
| build-rmq-tests: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| services: | |
| rabbitmq: | |
| image: rabbitmq:3.11 | |
| env: | |
| RABBITMQ_DEFAULT_USER: ams | |
| RABBITMQ_DEFAULT_PASS: ams | |
| ports: | |
| - 5672 | |
| container: | |
| image: ghcr.io/llnl/ams-ci-almalinux8:latest | |
| env: | |
| RABBITMQ_USER: ams | |
| RABBITMQ_PASS: ams | |
| RABBITMQ_HOST: rabbitmq | |
| RABBITMQ_PORT: 5672 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build Torch=On FAISS=On RMQ=On AMS | |
| shell: bash -l {0} | |
| run: | | |
| module load gcc/11.2.1 | |
| export SPACK_ROOT=/spack/ | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| rm -rf build/ | |
| mkdir build | |
| cd build | |
| export AMS_MFEM_PATH=$(spack location -i mfem) | |
| export AMS_TORCH_PATH=$(spack location -i py-torch)/lib/python3.10/site-packages/torch/share/cmake/Torch | |
| export AMS_FAISS_PATH=$(spack location -i faiss) | |
| export AMS_UMPIRE_PATH=$(spack location -i umpire) | |
| export AMS_HDF5_PATH=$(spack location -i hdf5) | |
| export AMS_AMQPCPP_PATH=$(spack location -i amqp-cpp)/cmake | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=On \ | |
| -DCMAKE_PREFIX_PATH=$INSTALL_DIR \ | |
| -DWITH_CALIPER=On \ | |
| -DWITH_HDF5=On \ | |
| -DWITH_EXAMPLES=On \ | |
| -DAMS_HDF5_DIR=$AMS_HDF5_PATH \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DWITH_CUDA=Off \ | |
| -DUMPIRE_DIR=$AMS_UMPIRE_PATH \ | |
| -DMFEM_DIR=$AMS_MFEM_PATH \ | |
| -DWITH_FAISS=On \ | |
| -DWITH_MPI=On \ | |
| -DWITH_TORCH=On \ | |
| -DWITH_TESTS=On \ | |
| -DTorch_DIR=$AMS_TORCH_PATH \ | |
| -DFAISS_DIR=$AMS_FAISS_PATH \ | |
| -DWITH_AMS_DEBUG=On \ | |
| -DWITH_WORKFLOW=On \ | |
| -DWITH_ADIAK=Off \ | |
| -DWITH_RMQ=On \ | |
| -Damqpcpp_DIR=$AMS_AMQPCPP_PATH \ | |
| $GITHUB_WORKSPACE | |
| make | |
| - name: Run tests Torch=On FAISS=On RMQ=On AMSlib RabbitMQ egress | |
| run: | | |
| cd build | |
| export SPACK_ROOT=/spack/ | |
| source /spack/share/spack/setup-env.sh | |
| spack env activate -p /ams-spack-env | |
| # We overwrite the rmq.json created by CMake | |
| echo """{ | |
| \"db\": { | |
| \"dbType\": \"rmq\", | |
| \"rmq_config\": { | |
| \"rabbitmq-name\": \"rabbit\", | |
| \"rabbitmq-user\": \"${RABBITMQ_USER}\", | |
| \"rabbitmq-password\": \"${RABBITMQ_PASS}\", | |
| \"service-port\": ${RABBITMQ_PORT}, | |
| \"service-host\": \"${RABBITMQ_HOST}\", | |
| \"rabbitmq-vhost\": \"/\", | |
| \"rabbitmq-outbound-queue\": \"test-ci\", | |
| \"rabbitmq-exchange\": \"ams-fanout\", | |
| \"rabbitmq-routing-key\": \"training\" | |
| }, | |
| \"update_surrogate\": false | |
| }, | |
| \"ml_models\": {}, | |
| \"domain_models\": {} | |
| }""" > $GITHUB_WORKSPACE/build/tests/AMSlib/rmq.json | |
| make test | |
| env: | |
| RABBITMQ_USER: ams | |
| RABBITMQ_PASS: ams | |
| RABBITMQ_HOST: rabbitmq | |
| RABBITMQ_PORT: 5672 |