From 27bfc1f8f3d74909d80618603a9b04f2e202cf78 Mon Sep 17 00:00:00 2001 From: Maximilian10 <55431857+Maximilian10@users.noreply.github.com> Date: Wed, 1 Nov 2023 21:40:19 -0400 Subject: [PATCH 1/8] Update README.md --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index a26a227..122c8ef 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,6 @@ # YACHT [![codecov](https://codecov.io/gh/KoslickiLab/YACHT/graph/badge.svg?token=AZD6LBFR5P)](https://codecov.io/gh/KoslickiLab/YACHT) +[![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=KoslickiLab_YACHT&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=KoslickiLab_YACHT) YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI). From c114720000ffd2cc3c3ea9d7af8579414041a4c7 Mon Sep 17 00:00:00 2001 From: Maximilian10 <55431857+Maximilian10@users.noreply.github.com> Date: Wed, 1 Nov 2023 21:42:17 -0400 Subject: [PATCH 2/8] Update README.md --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index 122c8ef..1aca1a5 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,7 @@ # YACHT [![codecov](https://codecov.io/gh/KoslickiLab/YACHT/graph/badge.svg?token=AZD6LBFR5P)](https://codecov.io/gh/KoslickiLab/YACHT) [![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=KoslickiLab_YACHT&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=KoslickiLab_YACHT) +[![Reliability Rating](https://sonarcloud.io/api/project_badges/measure?project=KoslickiLab_YACHT&metric=reliability_rating)](https://sonarcloud.io/summary/new_code?id=KoslickiLab_YACHT) YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI). From b7c3fc998de4e574763352b4c9320fa5e6b21fd9 Mon Sep 17 00:00:00 2001 From: Maximilian10 <55431857+Maximilian10@users.noreply.github.com> Date: Wed, 1 Nov 2023 21:44:02 -0400 Subject: [PATCH 3/8] Update README.md --- README.md | 1 - 1 file changed, 1 deletion(-) diff --git a/README.md b/README.md index 1aca1a5..122c8ef 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,6 @@ # YACHT [![codecov](https://codecov.io/gh/KoslickiLab/YACHT/graph/badge.svg?token=AZD6LBFR5P)](https://codecov.io/gh/KoslickiLab/YACHT) [![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=KoslickiLab_YACHT&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=KoslickiLab_YACHT) -[![Reliability Rating](https://sonarcloud.io/api/project_badges/measure?project=KoslickiLab_YACHT&metric=reliability_rating)](https://sonarcloud.io/summary/new_code?id=KoslickiLab_YACHT) YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI). From 406be5b368a8a9940692aed0d7fe7d63ca990d31 Mon Sep 17 00:00:00 2001 From: Maximilian10 <55431857+Maximilian10@users.noreply.github.com> Date: Thu, 2 Nov 2023 15:23:02 -0400 Subject: [PATCH 4/8] Update README.md --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index 122c8ef..a8c5a11 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,7 @@ # YACHT [![codecov](https://codecov.io/gh/KoslickiLab/YACHT/graph/badge.svg?token=AZD6LBFR5P)](https://codecov.io/gh/KoslickiLab/YACHT) [![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=KoslickiLab_YACHT&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=KoslickiLab_YACHT) +[![License: MIT](https://img.shields.io/badge/License-MIT-green.svg)](https://opensource.org/licenses/MIT) YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI). From cccf380838c846267867c5f88ffb62c0e6920e8f Mon Sep 17 00:00:00 2001 From: mfl15 <144844529+mfl15@users.noreply.github.com> Date: Thu, 2 Nov 2023 15:32:02 -0400 Subject: [PATCH 5/8] Update README.md --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index a8c5a11..d20d524 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,5 @@ # YACHT +[![GitHub Workflow Status](https://img.shields.io/github/actions/workflow/status/KoslickiLab/YACHT/runTest.yml?logo=github&label=Python%20tests&link=https%3A%2F%2Fgithub.com%2FKoslickiLab%2FYACHT%2Factions)](https://github.com/KoslickiLab/YACHT/actions) [![codecov](https://codecov.io/gh/KoslickiLab/YACHT/graph/badge.svg?token=AZD6LBFR5P)](https://codecov.io/gh/KoslickiLab/YACHT) [![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=KoslickiLab_YACHT&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=KoslickiLab_YACHT) [![License: MIT](https://img.shields.io/badge/License-MIT-green.svg)](https://opensource.org/licenses/MIT) From 483f8520a6920c438808b74af726f20613429b59 Mon Sep 17 00:00:00 2001 From: Maximilian10 <55431857+Maximilian10@users.noreply.github.com> Date: Thu, 2 Nov 2023 15:39:14 -0400 Subject: [PATCH 6/8] Update README.md --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index d20d524..8660d32 100644 --- a/README.md +++ b/README.md @@ -3,6 +3,7 @@ [![codecov](https://codecov.io/gh/KoslickiLab/YACHT/graph/badge.svg?token=AZD6LBFR5P)](https://codecov.io/gh/KoslickiLab/YACHT) [![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=KoslickiLab_YACHT&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=KoslickiLab_YACHT) [![License: MIT](https://img.shields.io/badge/License-MIT-green.svg)](https://opensource.org/licenses/MIT) +[![CodeQL](https://github.com/MichaelCurrin/badge-generator/workflows/CodeQL/badge.svg)](https://github.com/KoslickiLab/YACHT/actions?query=workflow%3ACodeQL "Code quality workflow status") YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI). From 08fb9af80611b72bb2f2e3bb2c92e30b403f084e Mon Sep 17 00:00:00 2001 From: Maximilian10 <55431857+Maximilian10@users.noreply.github.com> Date: Thu, 2 Nov 2023 15:39:38 -0400 Subject: [PATCH 7/8] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 8660d32..c4b7ce6 100644 --- a/README.md +++ b/README.md @@ -2,8 +2,8 @@ [![GitHub Workflow Status](https://img.shields.io/github/actions/workflow/status/KoslickiLab/YACHT/runTest.yml?logo=github&label=Python%20tests&link=https%3A%2F%2Fgithub.com%2FKoslickiLab%2FYACHT%2Factions)](https://github.com/KoslickiLab/YACHT/actions) [![codecov](https://codecov.io/gh/KoslickiLab/YACHT/graph/badge.svg?token=AZD6LBFR5P)](https://codecov.io/gh/KoslickiLab/YACHT) [![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=KoslickiLab_YACHT&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=KoslickiLab_YACHT) -[![License: MIT](https://img.shields.io/badge/License-MIT-green.svg)](https://opensource.org/licenses/MIT) [![CodeQL](https://github.com/MichaelCurrin/badge-generator/workflows/CodeQL/badge.svg)](https://github.com/KoslickiLab/YACHT/actions?query=workflow%3ACodeQL "Code quality workflow status") +[![License: MIT](https://img.shields.io/badge/License-MIT-green.svg)](https://opensource.org/licenses/MIT) YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI). From a81bc40085c405bfdd9b1f3540b4692c17dba53b Mon Sep 17 00:00:00 2001 From: mfl15 <144844529+mfl15@users.noreply.github.com> Date: Thu, 2 Nov 2023 16:00:35 -0400 Subject: [PATCH 8/8] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index c4b7ce6..cde1d6b 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ [![codecov](https://codecov.io/gh/KoslickiLab/YACHT/graph/badge.svg?token=AZD6LBFR5P)](https://codecov.io/gh/KoslickiLab/YACHT) [![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=KoslickiLab_YACHT&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=KoslickiLab_YACHT) [![CodeQL](https://github.com/MichaelCurrin/badge-generator/workflows/CodeQL/badge.svg)](https://github.com/KoslickiLab/YACHT/actions?query=workflow%3ACodeQL "Code quality workflow status") -[![License: MIT](https://img.shields.io/badge/License-MIT-green.svg)](https://opensource.org/licenses/MIT) +[![License: MIT](https://img.shields.io/badge/License-MIT-green.svg)](https://github.com/KoslickiLab/YACHT/blob/main/LICENSE.txt) YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI).