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environment.yml
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environment.yml
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name: abo
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- bamtools=2.5.2=hdcf5f25_5
- binutils_impl_linux-64=2.43=h4bf12b8_2
- bioconductor-biobase=2.62.0=r43ha9d7317_2
- bioconductor-biocgenerics=0.48.1=r43hdfd78af_2
- bioconductor-ebseq=2.0.0=r43hf17093f_3
- blat=35=1
- boost-cpp=1.85.0=h3c6214e_4
- bowtie2=2.5.4=h7071971_4
- bwa=0.7.18=he4a0461_1
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.34.3=heb4867d_0
- ca-certificates=2024.8.30=hbcca054_0
- cairo=1.18.0=hebfffa5_3
- curl=8.10.1=hbbe4b11_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_3
- fontconfig=2.15.0=h7e30c49_1
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=14.2.0=h6b349bd_1
- gfortran_impl_linux-64=14.2.0=hc73f493_1
- graphite2=1.3.13=h59595ed_1003
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=14.2.0=h2c03514_1
- harfbuzz=9.0.0=hda332d3_1
- hdf5=1.14.3=nompi_hdf9ad27_105
- hisat2=2.2.1=hdbdd923_6
- htslib=1.21=h5efdd21_0
- icu=75.1=he02047a_0
- k8=1.2=h6618dc6_3
- kallisto=0.51.1=heb0cbe2_0
- kernel-headers_linux-64=3.10.0=he073ed8_18
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.3=h659f571_0
- ld_impl_linux-64=2.43=h712a8e2_2
- lerc=4.0.0=h27087fc_0
- libaec=1.1.3=h59595ed_0
- libblas=3.9.0=25_linux64_openblas
- libboost=1.85.0=h0ccab89_4
- libboost-devel=1.85.0=h00ab1b0_4
- libboost-headers=1.85.0=ha770c72_4
- libcblas=3.9.0=25_linux64_openblas
- libcurl=8.10.1=hbbe4b11_0
- libdeflate=1.21=h4bc722e_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libexpat=2.6.4=h5888daf_0
- libffi=3.4.2=h7f98852_5
- libgcc=14.2.0=h77fa898_1
- libgcc-devel_linux-64=14.2.0=h41c2201_101
- libgcc-ng=14.2.0=h69a702a_1
- libgfortran=14.2.0=h69a702a_1
- libgfortran-ng=14.2.0=h69a702a_1
- libgfortran5=14.2.0=hd5240d6_1
- libglib=2.82.2=h2ff4ddf_0
- libgomp=14.2.0=h77fa898_1
- libhwloc=2.11.2=default_h0d58e46_1001
- libiconv=1.17=hd590300_2
- libjemalloc=5.3.0=h5888daf_1
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=25_linux64_openblas
- libnghttp2=1.64.0=h161d5f1_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.28=pthreads_h94d23a6_1
- libopenssl-static=3.4.0=hb9d3cd8_0
- libpng=1.6.44=hadc24fc_0
- libsanitizer=14.2.0=h2a3dede_1
- libsqlite=3.47.0=hadc24fc_1
- libssh2=1.11.0=h0841786_0
- libstdcxx=14.2.0=hc0a3c3a_1
- libstdcxx-devel_linux-64=14.2.0=h41c2201_101
- libstdcxx-ng=14.2.0=h4852527_1
- libtiff=4.7.0=h6565414_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.4.0=hd590300_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.13.5=hb346dea_0
- libzlib=1.3.1=hb9d3cd8_2
- make=4.4.1=hb9d3cd8_2
- mariadb-connector-c=3.4.2=h10329db_1
- minimap2=2.28=he4a0461_3
- mysql-connector-c=6.1.11=h659d440_1008
- ncurses=6.5=he02047a_1
- openssl=3.4.0=hb9d3cd8_0
- pango=1.54.0=h4c5309f_1
- pcre2=10.44=hba22ea6_2
- perl=5.32.1=7_hd590300_perl5
- perl-inc-latest=0.500=pl5321ha770c72_0
- perl-module-build=0.4234=pl5321ha770c72_0
- pip=24.3.1=pyh8b19718_0
- pixman=0.43.2=h59595ed_0
- pthread-stubs=0.4=hb9d3cd8_1002
- python=3.12.7=hc5c86c4_0_cpython
- python_abi=3.12=5_cp312
- r-assertthat=0.2.1=r43hc72bb7e_5
- r-base=4.3.3=h68df6d5_15
- r-bh=1.84.0_0=r43hc72bb7e_1
- r-bitops=1.0_9=r43h2b5f3a1_0
- r-blockmodeling=1.1.5=r43hc4980d5_1
- r-brio=1.1.5=r43hb1dbf0f_1
- r-callr=3.7.6=r43hc72bb7e_1
- r-catools=1.18.3=r43h93ab643_0
- r-cli=3.6.3=r43h0d4f4ea_1
- r-crayon=1.5.3=r43hc72bb7e_1
- r-desc=1.4.3=r43hc72bb7e_1
- r-diffobj=0.3.5=r43hb1dbf0f_3
- r-digest=0.6.37=r43h0d4f4ea_0
- r-ellipsis=0.3.2=r43hb1dbf0f_3
- r-evaluate=1.0.1=r43hc72bb7e_0
- r-fansi=1.0.6=r43hb1dbf0f_1
- r-fs=1.6.5=r43h93ab643_0
- r-glue=1.8.0=r43h2b5f3a1_0
- r-gplots=3.2.0=r43hc72bb7e_0
- r-gtools=3.9.5=r43hb1dbf0f_1
- r-jsonlite=1.8.9=r43h2b5f3a1_0
- r-kernsmooth=2.23_24=r43hc2011d3_1
- r-lattice=0.22_6=r43hb1dbf0f_1
- r-lifecycle=1.0.4=r43hc72bb7e_1
- r-magrittr=2.0.3=r43hb1dbf0f_3
- r-matrix=1.6_5=r43he966344_1
- r-pillar=1.9.0=r43hc72bb7e_2
- r-pkgbuild=1.4.5=r43hc72bb7e_0
- r-pkgconfig=2.0.3=r43hc72bb7e_4
- r-pkgload=1.4.0=r43hc72bb7e_0
- r-praise=1.0.0=r43hc72bb7e_1008
- r-prettyunits=1.2.0=r43hc72bb7e_1
- r-processx=3.8.4=r43hb1dbf0f_1
- r-ps=1.8.1=r43h2b5f3a1_0
- r-r6=2.5.1=r43hc72bb7e_3
- r-rcpp=1.0.13_1=r43h93ab643_0
- r-rcppeigen=0.3.4.0.2=r43hb79369c_0
- r-rematch2=2.1.2=r43hc72bb7e_4
- r-rlang=1.1.4=r43ha18555a_1
- r-rprojroot=2.0.4=r43hc72bb7e_1
- r-testthat=3.2.1.1=r43h0d4f4ea_1
- r-tibble=3.2.1=r43hdb488b9_3
- r-utf8=1.2.4=r43hb1dbf0f_1
- r-vctrs=0.6.5=r43h0d4f4ea_1
- r-waldo=0.6.1=r43hc72bb7e_0
- r-withr=3.0.2=r43hc72bb7e_0
- readline=8.2=h8228510_1
- rsem=1.3.3=pl5321h0033a41_7
- salmon=1.10.3=h6dccd9a_2
- samtools=1.21=h50ea8bc_0
- sed=4.8=he412f7d_0
- setuptools=75.5.0=pyhff2d567_0
- star=2.7.11b=h43eeafb_3
- sysroot_linux-64=2.17=h4a8ded7_18
- tbb=2022.0.0=hceb3a55_0
- tk=8.6.13=noxft_h4845f30_101
- tktable=2.10=h8bc8fbc_6
- tpmcalculator=0.0.5=h7a259b3_1
- tzdata=2024b=hc8b5060_0
- ucsc-bigwigsummary=469=he8037a5_2
- wheel=0.45.0=pyhd8ed1ab_0
- xorg-libice=1.1.1=hb9d3cd8_1
- xorg-libsm=1.2.4=he73a12e_1
- xorg-libx11=1.8.10=h4f16b4b_0
- xorg-libxau=1.0.11=hb9d3cd8_1
- xorg-libxdmcp=1.1.5=hb9d3cd8_0
- xorg-libxext=1.3.6=hb9d3cd8_0
- xorg-libxrender=0.9.11=hb9d3cd8_1
- xorg-libxt=1.3.1=hb9d3cd8_0
- xorg-xorgproto=2024.1=hb9d3cd8_1
- xz=5.2.6=h166bdaf_0
- zlib=1.3.1=hb9d3cd8_2
- zstd=1.5.6=ha6fb4c9_0
prefix: /share/korflab/project/intronomicon/abo