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INTRONOMICON

The Book of Introns

Manifest

In the order of use (-ish)

  • downloader.py retrieve GEO and SRA files for a taxid
  • database-builder.py read GEO and SRA files into database
  • intron-injector.py add introns to database (via sequence alignment)
  • sraxml.py shared library for reading XML files from SRA
  • cultist.py something for debugging and exploring database
  • xmltoy.py something for debugging and exploring xml files
  • notes.md random stuff the devs are currently thinking about