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| # @itk-wasm/morphological-contour-interpolation | ||
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| - 👨💻 [`Live API Demo`](https://kitwaremedical.github.io/ITKMorphologicalContourInterpolation/ts/app/) ✨ | ||
| - 🕮 [`JavaScript Documentation`](https://kitwaremedical.github.io/ITKMorphologicalContourInterpolation/ts/docs/) 📚 | ||
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| [](https://www.npmjs.com/package/@itk-wasm/morphological-contour-interpolation) | ||
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| > Morphology-based approach for interslice interpolation of anatomical slices from volumetric images. | ||
| ## Installation | ||
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| ```sh | ||
| npm install @itk-wasm/morphological-contour-interpolation | ||
| ``` | ||
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| ## Usage | ||
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| ### Browser interface | ||
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| Import: | ||
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| ```js | ||
| import { | ||
| morphologicalContourInterpolation, | ||
| setPipelinesBaseUrl, | ||
| getPipelinesBaseUrl, | ||
| } from "@itk-wasm/morphological-contour-interpolation" | ||
| ``` | ||
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| #### morphologicalContourInterpolation | ||
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| *Interpolates contours between slices.* | ||
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| ```ts | ||
| async function morphologicalContourInterpolation( | ||
| inputImage: Image, | ||
| options: MorphologicalContourInterpolationOptions = {} | ||
| ) : Promise<MorphologicalContourInterpolationResult> | ||
| ``` | ||
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| | Parameter | Type | Description | | ||
| | :----------: | :-----: | :-------------- | | ||
| | `inputImage` | *Image* | The input image | | ||
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| **`MorphologicalContourInterpolationOptions` interface:** | ||
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| | Property | Type | Description | | ||
| | :-------------------------: | :-------------------------: | :------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | | ||
| | `label` | *number* | The label to interpolate. Interpolates all labels if set to 0 (default). | | ||
| | `axis` | *number* | Interpolate only along this axis. Interpolates along all axes if set to -1 (default). | | ||
| | `noHeuristicAlignment` | *boolean* | Heuristic alignment of regions for interpolation is faster than optimal alignment. | | ||
| | `noUseDistanceTransform` | *boolean* | Using distance transform instead of repeated dilations to calculate the median contour is slightly faster, but produces lower quality interpolations. | | ||
| | `useCustomSlicePositions` | *boolean* | Use custom slice positions (not slice auto-detection). | | ||
| | `noUseExtrapolation` | *boolean* | Perform extrapolation for branch extremities. Branch extremities are defined as regions having no overlap with any region in the next slice. Extrapolation helps generate smooth surface closings. | | ||
| | `useBallStructuringElement` | *boolean* | Use ball instead of default cross structuring element for repeated dilations. | | ||
| | `labeledSliceIndicesAxis` | *number* | Axis along which the labeled slice indices are defined. Default is -1 (that is, auto-detection). | | ||
| | `labeledSliceIndicesLabel` | *number* | Label of the slice indices. Default is 1. | | ||
| | `labeledSliceIndices` | *number[]* | List of labeled slice indices. Default is empty. | | ||
| | `webWorker` | *null or Worker or boolean* | WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker. | | ||
| | `noCopy` | *boolean* | When SharedArrayBuffer's are not available, do not copy inputs. | | ||
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| **`MorphologicalContourInterpolationResult` interface:** | ||
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| | Property | Type | Description | | ||
| | :-----------: | :------: | :------------------------------ | | ||
| | `outputImage` | *Image* | The output image | | ||
| | `webWorker` | *Worker* | WebWorker used for computation. | | ||
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| #### setPipelinesBaseUrl | ||
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| *Set base URL for WebAssembly assets when vendored.* | ||
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| ```ts | ||
| function setPipelinesBaseUrl( | ||
| baseUrl: string | URL | ||
| ) : void | ||
| ``` | ||
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| #### getPipelinesBaseUrl | ||
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| *Get base URL for WebAssembly assets when vendored.* | ||
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| ```ts | ||
| function getPipelinesBaseUrl() : string | URL | ||
| ``` | ||
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| ### Node interface | ||
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| Import: | ||
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| ```js | ||
| import { | ||
| morphologicalContourInterpolationNode, | ||
| } from "@itk-wasm/morphological-contour-interpolation" | ||
| ``` | ||
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| #### morphologicalContourInterpolationNode | ||
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| *Interpolates contours between slices.* | ||
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| ```ts | ||
| async function morphologicalContourInterpolationNode( | ||
| inputImage: Image, | ||
| options: MorphologicalContourInterpolationNodeOptions = {} | ||
| ) : Promise<MorphologicalContourInterpolationNodeResult> | ||
| ``` | ||
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| | Parameter | Type | Description | | ||
| | :----------: | :-----: | :-------------- | | ||
| | `inputImage` | *Image* | The input image | | ||
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| **`MorphologicalContourInterpolationNodeOptions` interface:** | ||
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| | Property | Type | Description | | ||
| | :-------------------------: | :--------: | :------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | | ||
| | `label` | *number* | The label to interpolate. Interpolates all labels if set to 0 (default). | | ||
| | `axis` | *number* | Interpolate only along this axis. Interpolates along all axes if set to -1 (default). | | ||
| | `noHeuristicAlignment` | *boolean* | Heuristic alignment of regions for interpolation is faster than optimal alignment. | | ||
| | `noUseDistanceTransform` | *boolean* | Using distance transform instead of repeated dilations to calculate the median contour is slightly faster, but produces lower quality interpolations. | | ||
| | `useCustomSlicePositions` | *boolean* | Use custom slice positions (not slice auto-detection). | | ||
| | `noUseExtrapolation` | *boolean* | Perform extrapolation for branch extremities. Branch extremities are defined as regions having no overlap with any region in the next slice. Extrapolation helps generate smooth surface closings. | | ||
| | `useBallStructuringElement` | *boolean* | Use ball instead of default cross structuring element for repeated dilations. | | ||
| | `labeledSliceIndicesAxis` | *number* | Axis along which the labeled slice indices are defined. Default is -1 (that is, auto-detection). | | ||
| | `labeledSliceIndicesLabel` | *number* | Label of the slice indices. Default is 1. | | ||
| | `labeledSliceIndices` | *number[]* | List of labeled slice indices. Default is empty. | | ||
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| **`MorphologicalContourInterpolationNodeResult` interface:** | ||
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| | Property | Type | Description | | ||
| | :-----------: | :-----: | :--------------- | | ||
| | `outputImage` | *Image* | The output image | |
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| { | ||
| "name": "@itk-wasm/morphological-contour-interpolation", | ||
| "version": "1.0.0", | ||
| "version": "1.0.1", | ||
| "packageManager": "[email protected]", | ||
| "description": "N-D morphology-based approach for interslice interpolation of anatomical slices from volumetric images.", | ||
| "type": "module", | ||
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