From 6b7d1c84dc19ba385a6a3f5da69853847e7f90f1 Mon Sep 17 00:00:00 2001 From: Kirstie Whitaker Date: Mon, 15 Apr 2019 21:11:04 +0100 Subject: [PATCH 1/2] Move example RAW data from SOURCE data --- .../{sourcedata => }/sub-01/anat/sub-01_FLASH.json | 0 .../sub-01/anat/sub-01_echo-1_FLASH.json | 0 .../sub-01/anat/sub-01_echo-1_part-mag_FLASH.nii.gz | 0 .../anat/sub-01_echo-1_part-phase_FLASH.nii.gz | 0 .../sub-01/anat/sub-01_echo-2_FLASH.json | 0 .../sub-01/anat/sub-01_echo-2_part-mag_FLASH.nii.gz | 0 .../anat/sub-01_echo-2_part-phase_FLASH.nii.gz | 0 .../sub-01/anat/sub-01_echo-3_FLASH.json | 0 .../sub-01/anat/sub-01_echo-3_part-mag_FLASH.nii.gz | 0 .../anat/sub-01_echo-3_part-phase_FLASH.nii.gz | 0 .../sub-01/anat/sub-01_MP2RAGE.json | 0 .../{sourcedata => }/sub-01/anat/sub-01_T1w.json | 0 .../{sourcedata => }/sub-01/anat/sub-01_T1w.nii.gz | 0 .../sub-01/anat/sub-01_inv-1_MP2RAGE.json | 0 .../anat/sub-01_inv-1_part-mag_MP2RAGE.nii.gz | 0 .../anat/sub-01_inv-1_part-phase_MP2RAGE.nii.gz | 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diff --git a/examples/ds-04/sourcedata/sub-01/fmap/sub-01_echo-2_B1map.nii.gz b/examples/ds-04/sub-01/fmap/sub-01_echo-2_B1map.nii.gz similarity index 100% rename from examples/ds-04/sourcedata/sub-01/fmap/sub-01_echo-2_B1map.nii.gz rename to examples/ds-04/sub-01/fmap/sub-01_echo-2_B1map.nii.gz diff --git a/examples/ds-04/sourcedata/sub-01/fmap/sub-01_echo-2_part-mag_B0map.json b/examples/ds-04/sub-01/fmap/sub-01_echo-2_part-mag_B0map.json similarity index 100% rename from examples/ds-04/sourcedata/sub-01/fmap/sub-01_echo-2_part-mag_B0map.json rename to examples/ds-04/sub-01/fmap/sub-01_echo-2_part-mag_B0map.json diff --git a/examples/ds-04/sourcedata/sub-01/fmap/sub-01_echo-2_part-mag_B0map.nii.gz b/examples/ds-04/sub-01/fmap/sub-01_echo-2_part-mag_B0map.nii.gz similarity index 100% rename from examples/ds-04/sourcedata/sub-01/fmap/sub-01_echo-2_part-mag_B0map.nii.gz rename to examples/ds-04/sub-01/fmap/sub-01_echo-2_part-mag_B0map.nii.gz diff --git a/examples/ds-04/sourcedata/sub-01/fmap/sub-01_echo-2_part-phase_B0map.json b/examples/ds-04/sub-01/fmap/sub-01_echo-2_part-phase_B0map.json similarity index 100% rename from examples/ds-04/sourcedata/sub-01/fmap/sub-01_echo-2_part-phase_B0map.json rename to examples/ds-04/sub-01/fmap/sub-01_echo-2_part-phase_B0map.json diff --git a/examples/ds-04/sourcedata/sub-01/fmap/sub-01_echo-2_part-phase_B0map.nii.gz b/examples/ds-04/sub-01/fmap/sub-01_echo-2_part-phase_B0map.nii.gz similarity index 100% rename from examples/ds-04/sourcedata/sub-01/fmap/sub-01_echo-2_part-phase_B0map.nii.gz rename to examples/ds-04/sub-01/fmap/sub-01_echo-2_part-phase_B0map.nii.gz From b140377c94454cae32ebcaeee1537ef27a8711c4 Mon Sep 17 00:00:00 2001 From: Kirstie Whitaker Date: Mon, 15 Apr 2019 21:34:31 +0100 Subject: [PATCH 2/2] Move derivatives files in ds-4 to an hmri pipeline folder --- .../{ => hmri}/sub-01/anat/sub-01_MTsat.json | 0 .../{ => hmri}/sub-01/anat/sub-01_MTsat.nii.gz | Bin .../{ => hmri}/sub-01/anat/sub-01_PDmap.json | 0 .../{ => hmri}/sub-01/anat/sub-01_PDmap.nii.gz | Bin .../{ => hmri}/sub-01/anat/sub-01_R1map.json | 0 .../{ => hmri}/sub-01/anat/sub-01_R1map.nii.gz | Bin .../{ => hmri}/sub-01/anat/sub-01_R2starmap.json | 0 .../{ => hmri}/sub-01/anat/sub-01_R2starmap.nii.gz | Bin .../{ => hmri}/sub-01/fmap/sub-01_B0map.json | 0 .../{ => hmri}/sub-01/fmap/sub-01_B1map.json | 0 10 files changed, 0 insertions(+), 0 deletions(-) rename examples/ds-04/derivatives/{ => hmri}/sub-01/anat/sub-01_MTsat.json (100%) rename examples/ds-04/derivatives/{ => hmri}/sub-01/anat/sub-01_MTsat.nii.gz (100%) rename examples/ds-04/derivatives/{ => hmri}/sub-01/anat/sub-01_PDmap.json (100%) rename examples/ds-04/derivatives/{ => hmri}/sub-01/anat/sub-01_PDmap.nii.gz (100%) rename examples/ds-04/derivatives/{ => hmri}/sub-01/anat/sub-01_R1map.json (100%) rename examples/ds-04/derivatives/{ => hmri}/sub-01/anat/sub-01_R1map.nii.gz (100%) rename examples/ds-04/derivatives/{ => hmri}/sub-01/anat/sub-01_R2starmap.json (100%) rename examples/ds-04/derivatives/{ => hmri}/sub-01/anat/sub-01_R2starmap.nii.gz (100%) rename examples/ds-04/derivatives/{ => hmri}/sub-01/fmap/sub-01_B0map.json (100%) rename examples/ds-04/derivatives/{ => hmri}/sub-01/fmap/sub-01_B1map.json (100%) diff --git a/examples/ds-04/derivatives/sub-01/anat/sub-01_MTsat.json b/examples/ds-04/derivatives/hmri/sub-01/anat/sub-01_MTsat.json similarity index 100% rename from examples/ds-04/derivatives/sub-01/anat/sub-01_MTsat.json rename to examples/ds-04/derivatives/hmri/sub-01/anat/sub-01_MTsat.json diff --git a/examples/ds-04/derivatives/sub-01/anat/sub-01_MTsat.nii.gz b/examples/ds-04/derivatives/hmri/sub-01/anat/sub-01_MTsat.nii.gz similarity index 100% rename from examples/ds-04/derivatives/sub-01/anat/sub-01_MTsat.nii.gz rename to examples/ds-04/derivatives/hmri/sub-01/anat/sub-01_MTsat.nii.gz diff --git a/examples/ds-04/derivatives/sub-01/anat/sub-01_PDmap.json 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examples/ds-04/derivatives/sub-01/anat/sub-01_R1map.nii.gz rename to examples/ds-04/derivatives/hmri/sub-01/anat/sub-01_R1map.nii.gz diff --git a/examples/ds-04/derivatives/sub-01/anat/sub-01_R2starmap.json b/examples/ds-04/derivatives/hmri/sub-01/anat/sub-01_R2starmap.json similarity index 100% rename from examples/ds-04/derivatives/sub-01/anat/sub-01_R2starmap.json rename to examples/ds-04/derivatives/hmri/sub-01/anat/sub-01_R2starmap.json diff --git a/examples/ds-04/derivatives/sub-01/anat/sub-01_R2starmap.nii.gz b/examples/ds-04/derivatives/hmri/sub-01/anat/sub-01_R2starmap.nii.gz similarity index 100% rename from examples/ds-04/derivatives/sub-01/anat/sub-01_R2starmap.nii.gz rename to examples/ds-04/derivatives/hmri/sub-01/anat/sub-01_R2starmap.nii.gz diff --git a/examples/ds-04/derivatives/sub-01/fmap/sub-01_B0map.json b/examples/ds-04/derivatives/hmri/sub-01/fmap/sub-01_B0map.json similarity index 100% rename from examples/ds-04/derivatives/sub-01/fmap/sub-01_B0map.json rename to examples/ds-04/derivatives/hmri/sub-01/fmap/sub-01_B0map.json diff --git a/examples/ds-04/derivatives/sub-01/fmap/sub-01_B1map.json b/examples/ds-04/derivatives/hmri/sub-01/fmap/sub-01_B1map.json similarity index 100% rename from examples/ds-04/derivatives/sub-01/fmap/sub-01_B1map.json rename to examples/ds-04/derivatives/hmri/sub-01/fmap/sub-01_B1map.json