diff --git a/azure-pipeline.yml b/azure-pipeline.yml index 561f68533b7c8..fc2966287e6b3 100644 --- a/azure-pipeline.yml +++ b/azure-pipeline.yml @@ -44,6 +44,8 @@ stages: - stage: "test_linux" jobs: - job: "test_linux" + ##timeoutInMinutes: 90 # how long to run the job before automatically cancelling + ##cancelTimeoutInMinutes: 40 # how much time to give 'run always even if cancelled tasks' before stopping them pool: vmImage: "ubuntu-latest" strategy: diff --git a/recipes/starfish/meta.yaml b/recipes/starfish/meta.yaml index fb523d58069c0..b7c292b10bdca 100644 --- a/recipes/starfish/meta.yaml +++ b/recipes/starfish/meta.yaml @@ -1,51 +1,57 @@ -{% set version = "0.2.2" %} +{% set name = "starfish" %} +{% set version = "0.3.0" %} package: - name: starfish + name: {{ name }} version: {{ version }} source: - url: https://github.com/spacetx/starfish/archive/{{ version }}.tar.gz - sha256: 3183465443420ca068a2235ee754c4d02e787d69784349713b74ecf3f83b82fd + url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/starfish-{{ version }}.tar.gz + sha256: 29152eaa81d396ccc32695e9b1a0271e4f89851cf1f8f13687566b1d03fdd58a build: number: 0 + run_exports: + - {{ pin_subpackage("starfish", max_pin="x.x") }} noarch: python - script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv" + script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv" requirements: host: - - python >=3.6 + - python >=3.9,<3.12 - pip run: - - python >=3.6 + - python >=3.9,<3.12 - click - - dataclasses + - docutils <0.21 - h5py - - jsonschema - - matplotlib-base - - numpy !=1.13.0 - - pandas >=0.23.4 + - jsonschema <4.18 + - matplotlib-base <3.8 + - mistune ==0.8.4 + - numpy <1.25 - regional - read-roi - semantic_version - - scikit-image >=0.14.0,!=0.16.0.*,!= 0.16.1.*,!=0.16.2.*,!= 0.17.1.*,!=0.17.2.* + - scikit-image ==0.21 - scikit-learn - - scipy - - showit >=1.1.4 - - slicedimage ==4.1.1 + - seaborn-base + - showit + - slicedimage - sympy - tqdm - trackpy - validators - - xarray >=0.14.1 - - ipywidgets + - xarray <2023.09 test: imports: - starfish about: - home: https://github.com/spacetx/starfish + home: "https://github.com/spacetx/starfish" license: MIT - summary: standardized analysis pipeline for image-based transcriptomics + license_family: MIT + license_file: LICENSE + summary: "Standardized analysis pipeline for image-based transcriptomics." + dev_url: "https://github.com/spacetx/starfish" + doc_url: "https://spacetx-starfish.readthedocs.io/en/latest"