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phavip.yml
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phavip.yml
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name: base
channels:
- pytorch
- agbiome
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- bbmap=38.98=h5c4e2a8_1
- binutils_impl_linux-64=2.36.1=h193b22a_2
- binutils_linux-64=2.36=hf3e587d_10
- biopython=1.79=py39h3811e60_1
- blas=1.0=mkl
- blast=2.5.0=hc0b0e79_3
- blosc=1.21.1=h83bc5f7_2
- boost=1.78.0=py39hac2352c_0
- boost-cpp=1.78.0=h75c5d50_1
- bottleneck=1.3.4=py39hd257fcd_1
- bowtie2=2.4.5=py39hd2f7db1_2
- brotli=1.0.9=h166bdaf_7
- brotli-bin=1.0.9=h166bdaf_7
- brotlipy=0.7.0=py39hb9d737c_1004
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.12.7=ha878542_0
- cairo=1.16.0=ha61ee94_1011
- cat=5.2.3=hdfd78af_1
- cdhit=4.6.1=0
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.0=py39h4bc2ebd_0
- charset-normalizer=2.0.12=pyhd8ed1ab_0
- colorama=0.4.4=pyh9f0ad1d_0
- conda=22.11.1=py39hf3d152e_1
- conda-package-handling=1.8.1=py39hb9d737c_1
- cryptography=36.0.0=py39h9ce1e76_0
- cudatoolkit=11.3.1=h2bc3f7f_2
- curl=7.83.0=h2283fc2_0
- cycler=0.11.0=pyhd8ed1ab_0
- diamond=0.9.14=h2e03b76_4
- expat=2.4.8=h27087fc_0
- ffmpeg=4.3=hf484d3e_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.0=h8e229c2_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=10.4.0=h7ee1905_16
- gcc_linux-64=10.4.0=h9215b83_10
- gettext=0.19.8.1=h73d1719_1008
- gfortran_impl_linux-64=10.4.0=h44b2e72_16
- gfortran_linux-64=10.4.0=h69d5af5_10
- giflib=5.2.1=h36c2ea0_2
- glpk=5.0=h445213a_0
- gmp=6.2.1=h58526e2_0
- gnutls=3.6.13=h85f3911_1
- graphite2=1.3.13=h58526e2_1001
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=10.4.0=h7ee1905_16
- gxx_linux-64=10.4.0=h6e491c6_10
- harfbuzz=4.3.0=hf9f4e7c_0
- hdf5=1.12.1=nompi_h4df4325_104
- htslib=1.9=h4da6232_3
- icu=70.1=h27087fc_0
- idna=3.3=pyhd8ed1ab_0
- intel-openmp=2021.4.0=h06a4308_3561
- jbig=2.1=h7f98852_2003
- joblib=1.1.0=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_1
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.2=py39hf939315_1
- krb5=1.19.3=h08a2579_0
- lame=3.100=h7f98852_1001
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=3.0=h9c3ff4c_0
- libblas=3.9.0=12_linux64_mkl
- libbrotlicommon=1.0.9=h166bdaf_7
- libbrotlidec=1.0.9=h166bdaf_7
- libbrotlienc=1.0.9=h166bdaf_7
- libcblas=3.9.0=12_linux64_mkl
- libcurl=7.83.0=h2283fc2_0
- libdeflate=1.10=h7f98852_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=10.4.0=h74af60c_16
- libgcc-ng=12.1.0=h8d9b700_16
- libgfortran-ng=11.2.0=h69a702a_15
- libgfortran5=11.2.0=h5c6108e_15
- libglib=2.70.2=h174f98d_4
- libgomp=12.1.0=h8d9b700_16
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=12_linux64_mkl
- libnghttp2=1.47.0=he49606f_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.20=pthreads_h78a6416_0
- libpng=1.6.37=h21135ba_2
- libsanitizer=10.4.0=hde28e3b_16
- libssh2=1.10.0=ha35d2d1_2
- libstdcxx-devel_linux-64=10.4.0=h74af60c_16
- libstdcxx-ng=12.1.0=ha89aaad_16
- libtiff=4.3.0=h542a066_3
- libuuid=2.32.1=h7f98852_1000
- libuv=1.43.0=h7f98852_0
- libwebp=1.2.2=h3452ae3_0
- libwebp-base=1.2.2=h7f98852_1
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.3=h7463322_0
- libxslt=1.1.37=h873f0b0_0
- libzlib=1.2.13=h166bdaf_4
- lxml=4.9.1=py39h91f8133_1
- lz4-c=1.9.3=h9c3ff4c_1
- lzo=2.10=h516909a_1000
- make=4.3=hd18ef5c_1
- matplotlib-base=3.5.2=py39h700656a_0
- mcl=14.137=pl5262h779adbc_6
- megahit=1.2.9=h2e03b76_1
- metabat2=2.15=h137b6e9_0
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py39h7e14d7c_0
- munkres=1.1.4=pyh9f0ad1d_0
- ncurses=6.3=h27087fc_1
- nettle=3.6=he412f7d_0
- networkx=2.8=pyhd8ed1ab_0
- numexpr=2.8.1=py39h6abb31d_0
- numpy=1.22.3=py39hc58783e_2
- openh264=2.1.1=h780b84a_0
- openjdk=8.0.332=h166bdaf_0
- openjpeg=2.4.0=hb52868f_1
- openssl=3.0.7=h0b41bf4_1
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.4.2=py39h1832856_1
- pandoc=2.18=ha770c72_0
- pango=1.50.7=hbd2fdc8_0
- pbzip2=1.1.13=0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.37=h032f7d1_0
- perl=5.26.2=h36c2ea0_1008
- pillow=9.1.0=py39hae2aec6_2
- pip=22.0.4=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pluggy=1.0.0=pyhd8ed1ab_5
- pprodigal=1.0.1=pyhdfd78af_0
- prodigal=2.6.3=h779adbc_3
- prodigal-gv=2.10.0=h7132678_0
- psutil=5.9.0=py39hb9d737c_1
- pthread-stubs=0.4=h36c2ea0_1001
- pycosat=0.6.3=py39hb9d737c_1010
- pycparser=2.21=pyhd8ed1ab_0
- pyopenssl=22.0.0=pyhd8ed1ab_0
- pypandoc=1.7.5=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pysocks=1.7.1=py39hf3d152e_5
- pytables=3.7.0=py39h2669a42_0
- python=3.9.12=h2660328_1_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.9=2_cp39
- pytorch=1.11.0=py3.9_cuda11.3_cudnn8.2.0_0
- pytorch-mutex=1.0=cuda
- pytz=2022.1=pyhd8ed1ab_0
- r-backports=1.4.1=r41hcfec24a_0
- r-base=4.1.3=h06d3f91_1
- r-base64enc=0.1_3=r41hcfec24a_1004
- r-brio=1.1.3=r41hcfec24a_0
- r-callr=3.7.1=r41hc72bb7e_0
- r-cli=3.3.0=r41h7525677_0
- r-colorspace=2.0_3=r41h06615bd_0
- r-crayon=1.5.1=r41hc72bb7e_0
- r-desc=1.4.1=r41hc72bb7e_0
- r-diffobj=0.3.5=r41hcfec24a_0
- r-digest=0.6.29=r41h03ef668_0
- r-ellipsis=0.3.2=r41hcfec24a_0
- r-evaluate=0.15=r41hc72bb7e_0
- r-fansi=1.0.3=r41h06615bd_0
- r-farver=2.1.0=r41h03ef668_0
- r-fastmap=1.1.0=r41h03ef668_0
- r-ggplot2=3.3.6=r41hc72bb7e_0
- r-glue=1.6.2=r41h06615bd_0
- r-gtable=0.3.0=r41hc72bb7e_3
- r-htmltools=0.5.3=r41h7525677_0
- r-htmlwidgets=1.5.4=r41hc72bb7e_0
- r-igraph=1.3.5=r41hb34fc8a_0
- r-isoband=0.2.5=r41h03ef668_0
- r-jsonlite=1.8.0=r41h06615bd_0
- r-kaos=0.1.2=r41hc72bb7e_1
- r-labeling=0.4.2=r41hc72bb7e_1
- r-lattice=0.20_45=r41hcfec24a_0
- r-lifecycle=1.0.1=r41hc72bb7e_0
- r-magrittr=2.0.3=r41h06615bd_0
- r-mass=7.3_57=r41h06615bd_0
- r-matrix=1.4_1=r41h0154571_0
- r-mgcv=1.8_40=r41h0154571_0
- r-munsell=0.5.0=r41hc72bb7e_1004
- r-networkd3=0.4=r41hc72bb7e_1004
- r-nlme=3.1_157=r41h8da6f51_0
- r-pillar=1.8.0=r41hc72bb7e_0
- r-pkgconfig=2.0.3=r41hc72bb7e_1
- r-pkgload=1.2.4=r41h03ef668_0
- r-plyr=1.8.7=r41h7525677_0
- r-praise=1.0.0=r41hc72bb7e_1005
- r-processx=3.5.3=r41h06615bd_0
- r-ps=1.7.0=r41h06615bd_0
- r-r6=2.5.1=r41hc72bb7e_0
- r-rcolorbrewer=1.1_3=r41h785f33e_0
- r-rcpp=1.0.8.3=r41h7525677_0
- r-rematch2=2.1.2=r41hc72bb7e_1
- r-reshape2=1.4.4=r41h03ef668_1
- r-rlang=1.0.2=r41h7525677_0
- r-rprojroot=2.0.3=r41hc72bb7e_0
- r-rstudioapi=0.13=r41hc72bb7e_0
- r-scales=1.2.0=r41hc72bb7e_0
- r-stringi=1.7.6=r41h30a9eb7_2
- r-stringr=1.4.0=r41hc72bb7e_2
- r-testthat=3.1.4=r41h7525677_0
- r-tibble=3.1.7=r41h06615bd_0
- r-utf8=1.2.2=r41hcfec24a_0
- r-vctrs=0.4.1=r41h7525677_0
- r-viridislite=0.4.0=r41hc72bb7e_0
- r-waldo=0.4.0=r41hc72bb7e_0
- r-withr=2.5.0=r41hc72bb7e_0
- r-yaml=2.3.5=r41h06615bd_0
- readline=8.1=h46c0cb4_0
- requests=2.27.1=pyhd8ed1ab_0
- ruamel.yaml=0.17.21=py39hb9d737c_2
- ruamel.yaml.clib=0.2.7=py39h72bdee0_1
- ruamel_yaml=0.15.80=py39h3811e60_1006
- samtools=1.6=h3f2fef4_8
- scikit-learn=1.0.2=py39h4dfa638_0
- scipy=1.8.0=py39hee8e79c_1
- sed=4.8=he412f7d_0
- setuptools=62.1.0=py39hf3d152e_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.9=hbd366e4_0
- spades=3.13.0=0
- sqlite=3.38.2=h4ff8645_0
- sysroot_linux-64=2.12=he073ed8_15
- tbb=2020.2=h4bd325d_4
- threadpoolctl=3.1.0=pyh8a188c0_0
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- toolz=0.12.0=pyhd8ed1ab_0
- torchaudio=0.11.0=py39_cu113
- torchvision=0.12.0=py39_cu113
- tqdm=4.64.0=pyhd8ed1ab_0
- typing_extensions=4.2.0=pyha770c72_1
- tzdata=2022a=h191b570_0
- unicodedata2=14.0.0=py39hb9d737c_1
- urllib3=1.26.9=pyhd8ed1ab_0
- wheel=0.37.1=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=ha95c52a_0
- pip:
- anyio==3.6.2
- babel==2.10.3
- dendropy==4.5.2
- ete3==3.1.2
- fonttools==4.32.0
- json5==0.9.10
- jupyter-server==1.21.0
- jupyterlab-server==2.16.1
- lab==7.2
- matplotlib==3.5.1
- nbclassic==0.4.7
- notebook-shim==0.2.0
- simplejson==3.17.6
- sklearn==0.0.post1
- sniffio==1.3.0
- tomli==2.0.1
- txt2tags==3.7
- vcontact2==0.10.1
- websocket-client==1.4.1
prefix: /home/jyshang2/miniconda3