_pkgdown.yml

url: https://kasperskytte.github.io/mmgenome2/

home:
  links:
    - text: Latest stable release
      href: https://github.com/kasperskytte/mmgenome2/releases/latest/

template:
  params:
    bootswatch: yeti
    docsearch:
      api_key: 71d76a1c4adc57e7823b1c5a1e39065e
      index_name: mmgenome2
    ganalytics: UA-93913019-3

reference:
  - title: Loading and exporting data
    desc: Use `mmload` to load and merge metagenomic data, `mmstats` to show basic stats of the data, and `mmexport` to export the DNA sequences of binned scaffolds.
    contents:
    - mmload
    - mmstats
    - mmexport
    - mmscanbins
    - mmmerge_linkfiles
  - title: Metagenome plotting and exploration
    desc: Functions for plotting metagenomes and identifying individual genomes. 
    contents: 
    - mmplot
    - mmplot_pairs
    - mmplot_cov_profiles
    - mmnetwork
    - mmheatmap
  - title: Extracting scaffolds from metagenomes
    desc: Functions for extracting individual genomes from metagenomes for further exploration or exportation with `mmexport`. 
    contents: 
    - mmextract
    - mmexpand_network
    
navbar:
  title: "mmgenome2"
  left:
    - text: "Home"
      href: index.html
    - text: "Get started"
      href: articles/mmgenome2.html
    - text: "Functions"
      href: reference/index.html
    #- text: "Assembly guides"
    #  href: articles/assembly.html
  right:
  - icon: fa-github fa-lg
    href: https://github.com/kasperskytte/mmgenome2