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Segfault using PythonCall on Apple M1 with Julia 1.11.0-rc4 #563

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nhz2 opened this issue Oct 7, 2024 · 2 comments
Open

Segfault using PythonCall on Apple M1 with Julia 1.11.0-rc4 #563

nhz2 opened this issue Oct 7, 2024 · 2 comments
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@nhz2
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nhz2 commented Oct 7, 2024 •
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Affects: PythonCall

Describe the bug
I got a segfault using PythonCall on GitHub CI for Apple M1.

https://github.com/JuliaIO/ZipArchives.jl/actions/runs/11219970406/job/31187122812?pr=82

This seems to be an intermittent issue.
Your system

Julia Version 1.11.0-rc4
Commit b4b9add84db (2024-09-25 11:03 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: macOS (arm64-apple-darwin22.4.0)
  CPU: 3 × Apple M1 (Virtual)
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, apple-m1)
Threads: 1 default, 0 interactive, 1 GC (on 3 virtual cores)

Testing ZipArchives
      Status `/private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/Project.toml`
  [4c88cf16] Aqua v0.8.7
  [944b1d66] CodecZlib v0.7.6
  [36869731] Malt v1.1.1
  [6fe1bfb0] OffsetArrays v1.14.1
  [6099a3de] PythonCall v0.9.23
  [efcf1570] Setfield v1.1.1
  [3bb67fe8] TranscodingStreams v0.11.3
  [49080126] ZipArchives v2.3.0 `~/work/ZipArchives.jl/ZipArchives.jl`
  [a5390f91] ZipFile v0.10.1
  [1e303b3e] LibArchive_jll v3.7.4+0
  [2a0f44e3] Base64 v1.11.0
  [a63ad114] Mmap v1.11.0
  [44cfe95a] Pkg v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [8dfed614] Test v1.11.0
  [3f19e933] p7zip_jll v17.4.0+2
      Status `/private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/Manifest.toml`
  [4c88cf16] Aqua v0.8.7
  [dce04be8] ArgCheck v2.3.0
  [6309b1aa] CodecInflate64 v0.1.3
  [944b1d66] CodecZlib v0.7.6
  [34da2185] Compat v4.16.0
  [992eb4ea] CondaPkg v0.2.23
  [187b0558] ConstructionBase v1.5.8
  [9a962f9c] DataAPI v1.16.0
  [e2d170a0] DataValueInterfaces v1.0.0
  [0c81fc1b] InputBuffers v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.6.0
  [0f8b85d8] JSON3 v1.14.0
  [1914dd2f] MacroTools v0.5.13
  [36869731] Malt v1.1.1
  [0b3b1443] MicroMamba v0.1.14
  [6fe1bfb0] OffsetArrays v1.14.1
  [bac558e1] OrderedCollections v1.6.3
  [69de0a69] Parsers v2.8.1
  [fa939f87] Pidfile v1.3.0
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [6099a3de] PythonCall v0.9.23
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.0
  [6c6a2e73] Scratch v1.2.1
  [efcf1570] Setfield v1.1.1
  [1e83bf80] StaticArraysCore v1.4.3
  [856f2bd8] StructTypes v1.11.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [e17b2a0c] UnsafePointers v1.0.0
  [49080126] ZipArchives v2.3.0 `~/work/ZipArchives.jl/ZipArchives.jl`
  [a5390f91] ZipFile v0.10.1
  [1fd713ca] Attr_jll v2.5.2+0
  [6e34b625] Bzip2_jll v1.0.8+1
  [2e619515] Expat_jll v2.6.2+0
  [1e303b3e] LibArchive_jll v3.7.4+0
  [94ce4f54] Libiconv_jll v1.17.0+0
  [5ced3[41](https://github.com/JuliaIO/ZipArchives.jl/actions/runs/11219970406/job/31187122812?pr=82#step:6:44)a] Lz4_jll v1.10.0+1
  [458c3c95] OpenSSL_jll v3.0.15+1
  [ffd25f8a] XZ_jll v5.4.6+0
  [3161d3a3] Zstd_jll v1.5.6+1
  [ed5aba05] acl_jll v2.3.2+0
  [f8abcde7] micromamba_jll v1.5.8+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b[42](https://github.com/JuliaIO/ZipArchives.jl/actions/runs/11219970406/job/31187122812?pr=82#step:6:45)a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [deac9b[47](https://github.com/JuliaIO/ZipArchives.jl/actions/runs/11219970406/job/31187122812?pr=82#step:6:50)] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [83775a58] Zlib_jll v1.2.13+1
  [8e8[50](https://github.com/JuliaIO/ZipArchives.jl/actions/runs/11219970406/job/31187122812?pr=82#step:6:53)ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2

Additional context

Stack trace:

[3148] signal 11 (2): Segmentation fault: 11
in expression starting at /Users/runner/work/ZipArchives.jl/ZipArchives.jl/test/external_unzippers.jl:7
_PyObject_Malloc at /private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/.CondaPkg/env/lib/libpython3.11.dylib (unknown line)
PyUnicode_New at /private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/.CondaPkg/env/lib/libpython3.11.dylib (unknown line)
unicode_decode_utf8 at /private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/.CondaPkg/env/lib/libpython3.11.dylib (unknown line)
PyUnicode_FromFormatV at /private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/.CondaPkg/env/lib/libpython3.11.dylib (unknown line)
PyErr_Format at /private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/.CondaPkg/env/lib/libpython3.11.dylib (unknown line)
_PyObject_GenericGetAttrWithDict at /private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/.CondaPkg/env/lib/libpython3.11.dylib (unknown line)
PyObject_GetAttr at /private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/.CondaPkg/env/lib/libpython3.11.dylib (unknown line)
import_ensure_initialized at /private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/.CondaPkg/env/lib/libpython3.11.dylib (unknown line)
PyImport_ImportModuleLevelObject at /private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/.CondaPkg/env/lib/libpython3.11.dylib (unknown line)
PyImport_Import at /private/var/folders/0g/hj_q_pzx65bbjnslxz9n0src0000gn/T/jl_yiKQEd/.CondaPkg/env/lib/libpython3.11.dylib (unknown line)
PyImport_Import at /Users/runner/.julia/packages/PythonCall/Nr75f/src/C/pointers.jl:303
unknown function (ip: 0x12ed1409b)
unknown function (ip: 0x12ece431b)
unknown function (ip: 0x12ece42b7)
macro expansion at /Users/runner/.julia/packages/PythonCall/Nr75f/src/Core/Py.jl:132 [inlined]
pyimport at /Users/runner/.julia/packages/PythonCall/Nr75f/src/Core/builtins.jl:1561
unknown function (ip: 0x12ece41ff)
unknown function (ip: 0x12ecbd833)
unknown function (ip: 0x12ecbd6e3)
pyimport at /Users/runner/.julia/packages/PythonCall/Nr75f/src/Core/builtins.jl:1562 [inlined]
init_consts at /Users/runner/.julia/packages/PythonCall/Nr75f/src/Core/consts.jl:205
unknown function (ip: 0x12ecbd6a7)
unknown function (ip: 0x12eca421f)
unknown function (ip: 0x12eca40df)
__init__ at /Users/runner/.julia/packages/PythonCall/Nr75f/src/Core/Core.jl:42
unknown function (ip: 0x12eca4077)
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/./julia.h:2157 [inlined]
jl_module_run_initializer at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:76
run_module_init at ./loading.jl:1336
register_restored_modules at ./loading.jl:1324
#_include_from_serialized#1066 at ./loading.jl:1213
_include_from_serialized at ./loading.jl:1169 [inlined]
_include_from_serialized at ./loading.jl:1169 [inlined]
#_require_search_from_serialized#1076 at ./loading.jl:1975
_require_search_from_serialized at ./loading.jl:1898
jfptr__require_search_from_serialized_44910.1 at /Users/runner/hostedtoolcache/julia/1.11.0-rc4/aarch64/lib/julia/sys.dylib (unknown line)
_require at ./loading.jl:2435
__require_prelocked at ./loading.jl:2300
jfptr___require_prelocked_70208.1 at /Users/runner/hostedtoolcache/julia/1.11.0-rc4/aarch64/lib/julia/sys.dylib (unknown line)
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/./julia.h:2157 [inlined]
jl_f__call_in_world at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/builtins.c:894
#invoke_in_world#3 at ./essentials.jl:1088 [inlined]
invoke_in_world at ./essentials.jl:1085 [inlined]
_require_prelocked at ./loading.jl:2287
macro expansion at ./loading.jl:2226 [inlined]
macro expansion at ./lock.jl:273 [inlined]
__require at ./loading.jl:2183
jfptr___require_70144.1 at /Users/runner/hostedtoolcache/julia/1.11.0-rc4/aarch64/lib/julia/sys.dylib (unknown line)
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/./julia.h:2157 [inlined]
jl_f__call_in_world at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/builtins.c:894
#invoke_in_world#3 at ./essentials.jl:1088 [inlined]
invoke_in_world at ./essentials.jl:1085 [inlined]
require at ./loading.jl:2176
jfptr_require_70141.1 at /Users/runner/hostedtoolcache/julia/1.11.0-rc4/aarch64/lib/julia/sys.dylib (unknown line)
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/./julia.h:2157 [inlined]
call_require at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:486 [inlined]
eval_import_path at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:523
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:812
eval_body at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:629
eval_body at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:539
jl_interpret_toplevel_thunk at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:821
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:943
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:886
ijl_toplevel_eval at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:952 [inlined]
ijl_toplevel_eval_in at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:994
eval at ./boot.jl:430 [inlined]
include_string at ./loading.jl:[262](https://github.com/JuliaIO/ZipArchives.jl/actions/runs/11219970406/job/31187122812?pr=82#step:6:265)8
_include at ./loading.jl:2688
include at ./sysimg.jl:38
unknown function (ip: 0x102884087)
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/./julia.h:2157 [inlined]
do_call at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:126
eval_stmt_value at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:174
eval_body at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:663
jl_interpret_toplevel_thunk at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:821
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:943
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:886
ijl_toplevel_eval at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:952 [inlined]
ijl_toplevel_eval_in at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:994
eval at ./boot.jl:430 [inlined]
include_string at ./loading.jl:2628
_include at ./loading.jl:[268](https://github.com/JuliaIO/ZipArchives.jl/actions/runs/11219970406/job/31187122812?pr=82#step:6:271)8
include at ./sysimg.jl:38
unknown function (ip: 0x102884087)
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/./julia.h:2157 [inlined]
do_call at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:126
eval_stmt_value at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:174
eval_body at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:663
jl_interpret_toplevel_thunk at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:821
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:943
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:886
ijl_toplevel_eval at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:952 [inlined]
ijl_toplevel_eval_in at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:994
eval at ./boot.jl:430 [inlined]
include_string at ./loading.jl:2628
_include at ./loading.jl:2688
include at ./sysimg.jl:38
unknown function (ip: 0x102884087)
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/./julia.h:2157 [inlined]
do_call at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:126
eval_stmt_value at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:174
eval_body at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:663
jl_interpret_toplevel_thunk at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/interpreter.c:821
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:943
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:886
ijl_toplevel_eval at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:952 [inlined]
ijl_toplevel_eval_in at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/toplevel.c:994
jlplt_ijl_toplevel_eval_in_[283](https://github.com/JuliaIO/ZipArchives.jl/actions/runs/11219970406/job/31187122812?pr=82#step:6:286)55.1 at /Users/runner/hostedtoolcache/julia/1.11.0-rc4/aarch64/lib/julia/sys.dylib (unknown line)
eval at ./boot.jl:430 [inlined]
exec_options at ./client.jl:296
_start at ./client.jl:531
jfptr__start_72508.1 at /Users/runner/hostedtoolcache/julia/1.11.0-rc4/aarch64/lib/julia/sys.dylib (unknown line)
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/./julia.h:2157 [inlined]
true_main at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/jlapi.c:900
jl_repl_entrypoint at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-honeycrisp-XG3Q6T6R70.0/build/default-honeycrisp-XG3Q6T6R70-0/julialang/julia-release-1-dot-11/src/jlapi.c:1059
Allocations: 23655843 (Pool: 23653807; Big: 2036); GC: 20
Package ZipArchives errored during testing (received signal: 11)
@nhz2 nhz2 added the bug Something isn't working label Oct 7, 2024
@tmistele
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I have a very similar issue with the final julia 1.11.0. The segfault is very non-deterministic. It doesn't always happen and when it happens it doesn't always happen at the same point. Some backtraces look like this:

[36693] signal 11 (1): Segmentation fault
in expression starting at [REDACTED].jl
PyType_IsSubtype at /usr/lib64/libpython3.12.so.1.0 (unknown line)
unknown function (ip: 0x7fb959cbaf3d)
_PyEval_EvalFrameDefault at /usr/lib64/libpython3.12.so.1.0 (unknown line)
unknown function (ip: 0x7fb959cdce0a)
PyObject_CallObject at $HOME/.julia/packages/PythonCall/Nr75f/src/C/pointers.jl:303 [inlined]
macro expansion at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/Py.jl:132 [inlined]
pycallargs at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/builtins.jl:220
#pycall#21 at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/builtins.jl:243 [inlined]
pycall at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/builtins.jl:233 [inlined]
#_#11 at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/Py.jl:357 [inlined]
Py at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/Py.jl:357 [inlined]
[...]

Others like this:

[36447] signal 11 (1): Segmentation fault
in expression starting at [REDACTED].jl
PyObject_GetAttr at /usr/lib64/libpython3.12.so.1.0 (unknown line)
PyUFuncOverride_GetNonDefaultArrayUfunc at [REDACTED]/.venv/lib/python3.12/site-packages/numpy/_core/_multiarray_umath.cpython-312-x86_64-linux-gnu.so (unknown line)
PyUFunc_CheckOverride at [REDACTED]/.venv/lib/python3.12/site-packages/numpy/_core/_multiarray_umath.cpython-312-x86_64-linux-gnu.so (unknown line)
ufunc_generic_fastcall at [REDACTED]/.venv/lib/python3.12/site-packages/numpy/_core/_multiarray_umath.cpython-312-x86_64-linux-gnu.so (unknown line)
PyObject_Vectorcall at /usr/lib64/libpython3.12.so.1.0 (unknown line)
_PyEval_EvalFrameDefault at /usr/lib64/libpython3.12.so.1.0 (unknown line)
unknown function (ip: 0x7f829fedce0a)
PyObject_CallObject at $HOME/.julia/packages/PythonCall/Nr75f/src/C/pointers.jl:303 [inlined]
macro expansion at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/Py.jl:132 [inlined]
pycallargs at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/builtins.jl:220
#pycall#21 at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/builtins.jl:243 [inlined]
pycall at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/builtins.jl:233 [inlined]
#_#11 at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/Py.jl:357 [inlined]
Py at $HOME/.julia/packages/PythonCall/Nr75f/src/Core/Py.jl:357 [inlined]
[...]

Running the same code with julia 1.10.4 doesn't have this issue.

@dpinol
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dpinol commented Oct 10, 2024 •
edited
Loading

I also get seg faults, on linux, only on multithread, in applications which worked with julia 1.10

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@dpinol @tmistele @nhz2