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Missing "Reexport" dependency #215

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swiesend opened this issue Sep 4, 2018 · 10 comments
Closed

Missing "Reexport" dependency #215

swiesend opened this issue Sep 4, 2018 · 10 comments

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@swiesend
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swiesend commented Sep 4, 2018

Is this an issue or just me?

[ Info: Precompiling PlotlyJS [f0f68f2c-4968-5e81-91da-67840de0976a]
ERROR: LoadError: ArgumentError: Package PlotlyJS does not have Reexport in its dependencies:
- If you have PlotlyJS checked out for development and have
  added Reexport as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with PlotlyJS
Stacktrace:
 [1] require(::Module, ::Symbol) at ./loading.jl:830
 [2] include at ./boot.jl:317 [inlined]
 [3] include_relative(::Module, ::String) at ./loading.jl:1038
 [4] include(::Module, ::String) at ./sysimg.jl:29
 [5] top-level scope at none:2
 [6] eval at ./boot.jl:319 [inlined]
 [7] eval(::Expr) at ./client.jl:399
 [8] top-level scope at ./none:3
in expression starting at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:5
ERROR: Failed to precompile PlotlyJS [f0f68f2c-4968-5e81-91da-67840de0976a] to /home/sebastian/.julia/compiled/v0.7/PlotlyJS/1r9Ld.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] macro expansion at ./logging.jl:313 [inlined]
 [3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1185
 [4] macro expansion at ./logging.jl:311 [inlined]
 [5] _require(::Base.PkgId) at ./loading.jl:941
 [6] require(::Base.PkgId) at ./loading.jl:852
 [7] macro expansion at ./logging.jl:311 [inlined]
 [8] require(::Module, ::Symbol) at ./loading.jl:834
 [9] top-level scope at /home/sebastian/.julia/packages/Plots/ex9On/src/backends.jl:320
 [10] eval at ./boot.jl:319 [inlined]
 [11] _initialize_backend(::Plots.PlotlyJSBackend) at /home/sebastian/.julia/packages/Plots/ex9On/src/backends.jl:319
 [12] backend(::Plots.PlotlyJSBackend) at /home/sebastian/.julia/packages/Plots/ex9On/src/backends.jl:196
 [13] backend(::Symbol) at /home/sebastian/.julia/packages/Plots/ex9On/src/backends.jl:209
 [14] plotlyjs() at /home/sebastian/.julia/packages/Plots/ex9On/src/backends.jl:29
 [15] top-level scope at none:0
@swiesend swiesend changed the title Missing "Reexport" dep Missing "Reexport" dependecy Sep 4, 2018
@swiesend swiesend changed the title Missing "Reexport" dependecy Missing "Reexport" dependency Sep 4, 2018
@pdimens
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pdimens commented Sep 4, 2018

I have a similar issue when calling using PlotlyJS

[ Info: Precompiling PlotlyJS [f0f68f2c-4968-5e81-91da-67840de0976a]
┌ Warning: Package PlotlyJS does not have Reexport in its dependencies:
│ - If you have PlotlyJS checked out for development and have
│   added Reexport as a dependency but haven't updated your primary
│   environment's manifest file, try `Pkg.resolve()`.
│ - Otherwise you may need to report an issue with PlotlyJS
└ Loading Reexport into PlotlyJS from project dependency, future warnings for PlotlyJS are suppressed.
WARNING: could not import Base.quit into AtomShell
ERROR: LoadError: LoadError: UndefVarError: Associative not defined
Stacktrace:
 [1] top-level scope at /home/pdimens/.julia/packages/PlotlyJS/3eSkF/src/display.jl:101
 [2] top-level scope at /home/pdimens/.julia/packages/PlotlyJS/3eSkF/src/display.jl:90
 [3] include at ./boot.jl:317 [inlined]
 [4] include_relative(::Module, ::String) at ./loading.jl:1038
 [5] include at ./sysimg.jl:29 [inlined]
 [6] include(::String) at /home/pdimens/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:3
 [7] top-level scope at none:0
 [8] top-level scope at none:2
in expression starting at /home/pdimens/.julia/packages/PlotlyJS/3eSkF/src/display.jl:89
in expression starting at /home/pdimens/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:34
ERROR: Failed to precompile PlotlyJS [f0f68f2c-4968-5e81-91da-67840de0976a] to /home/pdimens/.julia/compiled/v1.0/PlotlyJS/1r9Ld.ji.

@sglyon
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sglyon commented Sep 4, 2018

What versions of PlotlyJS and Julia are you trying to use?

@swiesend
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swiesend commented Sep 4, 2018 •
edited
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Sorry for not having passed this information in first place...

When the error occurred "Reexport" wasn't installed yet.

$ julia
               _
   _       _ _(_)_     |  A fresh approach to technical computing
  (_)     | (_) (_)    |  Documentation: https://docs.julialang.org
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 0.7.0 (2018-08-08 06:46 UTC)
 _/ |\__'_|_|_|\__'_|  |  Official http://julialang.org/ release
|__/                   |  x86_64-pc-linux-gnu

(v0.7) pkg> status
    Status `~/.julia/environments/v0.7/Project.toml`
  [c52e3926] Atom v0.7.5
  [336ed68f] CSV v0.3.1
  [aaaa29a8] Clustering v0.12.0
  [944b1d66] CodecZlib v0.5.0
  [8f4d0f93] Conda v1.0.1
  [3a865a2d] CuArrays v0.7.3
  [a93c6f00] DataFrames v0.13.1
  [864edb3b] DataStructures v0.11.1
  [b4f34e82] Distances v0.7.3
  [31c24e10] Distributions v0.16.3
  [587475ba] Flux v0.6.6
  [f6369f11] ForwardDiff v0.9.0
  [c27321d9] Glob v1.2.0
  [7073ff75] IJulia v1.10.0
  [c8e1da08] IterTools v1.0.0
  [e5e0dc1b] Juno v0.5.2
  [b8a86587] NearestNeighbors v0.4.1
  [58dd65bb] Plotly v0.1.1
  [f0f68f2c] PlotlyJS v0.10.3
  [91a5bcdd] Plots v0.19.3
  [438e738f] PyCall v1.18.3
  [189a3867] Reexport v0.2.0
  [2913bbd2] StatsBase v0.25.0

But even with Reexport installed I get a similar issue:

julia> using PlotlyJS
[ Info: Precompiling PlotlyJS [f0f68f2c-4968-5e81-91da-67840de0976a]
┌ Warning: Package PlotlyJS does not have Reexport in its dependencies:
│ - If you have PlotlyJS checked out for development and have
│   added Reexport as a dependency but haven't updated your primary
│   environment's manifest file, try `Pkg.resolve()`.
│ - Otherwise you may need to report an issue with PlotlyJS
└ Loading Reexport into PlotlyJS from project dependency, future warnings for PlotlyJS are suppressed.
WARNING: importing deprecated binding Base.Associative into PlotlyJS.
WARNING: Base.Associative is deprecated, use AbstractDict instead.
  likely near /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/display.jl:89
WARNING: Base.Associative is deprecated, use AbstractDict instead.
  likely near /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/display.jl:89
WARNING: Base.Associative is deprecated, use AbstractDict instead.
  likely near /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/display.jl:89
WARNING: Base.Associative is deprecated, use AbstractDict instead.
  likely near /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/display.jl:89
┌ Warning: Requires now needs a UUID; please see the readme for changes in 0.7.
└ @ PlotlyJS ~/.julia/packages/PlotlyJS/3eSkF/src/display.jl:123
WARNING: Base.Random is deprecated, run `using Random` instead
  likely near /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/displays/electron.jl:5
ERROR: LoadError: LoadError: LoadError: UndefVarError: UUID not defined
Stacktrace:
 [1] getproperty(::Module, ::Symbol) at ./sysimg.jl:13
 [2] top-level scope at none:0
 [3] include at ./boot.jl:317 [inlined]
 [4] include_relative(::Module, ::String) at ./loading.jl:1038
 [5] include at ./sysimg.jl:29 [inlined]
 [6] include(::String) at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:3
 [7] top-level scope at none:0
 [8] include at ./boot.jl:317 [inlined]
 [9] include_relative(::Module, ::String) at ./loading.jl:1038
 [10] include at ./sysimg.jl:29 [inlined]
 [11] include(::String) at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:3
 [12] top-level scope at none:0
 [13] include at ./boot.jl:317 [inlined]
 [14] include_relative(::Module, ::String) at ./loading.jl:1038
 [15] include(::Module, ::String) at ./sysimg.jl:29
 [16] top-level scope at none:2
 [17] eval at ./boot.jl:319 [inlined]
 [18] eval(::Expr) at ./client.jl:399
 [19] top-level scope at ./none:3
in expression starting at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/displays/electron.jl:5
in expression starting at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/display.jl:124
in expression starting at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:34
ERROR: Failed to precompile PlotlyJS [f0f68f2c-4968-5e81-91da-67840de0976a] to /home/sebastian/.julia/compiled/v0.7/PlotlyJS/1r9Ld.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] macro expansion at ./logging.jl:313 [inlined]
 [3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1185
 [4] _require(::Base.PkgId) at ./logging.jl:311
 [5] require(::Base.PkgId) at ./loading.jl:852
 [6] macro expansion at ./logging.jl:311 [inlined]
 [7] require(::Module, ::Symbol) at ./loading.jl:834

@sglyon
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sglyon commented Sep 4, 2018

No problem!

Can you show the output of running the status command from the pkg prompt? I would like to see the version of PlotlyJS that you are using

@swiesend
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swiesend commented Sep 4, 2018

it's [f0f68f2c] PlotlyJS v0.10.3

(v0.7) pkg> update

(v0.7) pkg> status
    Status `~/.julia/environments/v0.7/Project.toml`
  [c52e3926] Atom v0.7.5
  [336ed68f] CSV v0.3.1
  [aaaa29a8] Clustering v0.12.0
  [944b1d66] CodecZlib v0.5.0
  [8f4d0f93] Conda v1.0.1
  [3a865a2d] CuArrays v0.7.3
  [a93c6f00] DataFrames v0.13.1
  [864edb3b] DataStructures v0.11.1
  [b4f34e82] Distances v0.7.3
  [31c24e10] Distributions v0.16.3
  [587475ba] Flux v0.6.6
  [f6369f11] ForwardDiff v0.9.0
  [c27321d9] Glob v1.2.0
  [7073ff75] IJulia v1.11.0
  [c8e1da08] IterTools v1.0.0
  [e5e0dc1b] Juno v0.5.2
  [b8a86587] NearestNeighbors v0.4.1
  [58dd65bb] Plotly v0.1.1
  [f0f68f2c] PlotlyJS v0.10.3
  [91a5bcdd] Plots v0.19.3
  [438e738f] PyCall v1.18.4
  [189a3867] Reexport v0.2.0
  [2913bbd2] StatsBase v0.25.0

julia> using PlotlyJS
[ Info: Precompiling PlotlyJS [f0f68f2c-4968-5e81-91da-67840de0976a]
┌ Warning: Package PlotlyJS does not have Reexport in its dependencies:
│ - If you have PlotlyJS checked out for development and have
│   added Reexport as a dependency but haven't updated your primary
│   environment's manifest file, try `Pkg.resolve()`.
│ - Otherwise you may need to report an issue with PlotlyJS
└ Loading Reexport into PlotlyJS from project dependency, future warnings for PlotlyJS are suppressed.
WARNING: importing deprecated binding Base.Associative into PlotlyJS.
WARNING: Base.Associative is deprecated, use AbstractDict instead.
  likely near /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/display.jl:89
WARNING: Base.Associative is deprecated, use AbstractDict instead.
  likely near /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/display.jl:89
WARNING: Base.Associative is deprecated, use AbstractDict instead.
  likely near /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/display.jl:89
WARNING: Base.Associative is deprecated, use AbstractDict instead.
  likely near /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/display.jl:89
┌ Warning: Requires now needs a UUID; please see the readme for changes in 0.7.
└ @ PlotlyJS ~/.julia/packages/PlotlyJS/3eSkF/src/display.jl:123
WARNING: Base.Random is deprecated, run `using Random` instead
  likely near /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/displays/electron.jl:5
ERROR: LoadError: LoadError: LoadError: UndefVarError: UUID not defined
Stacktrace:
 [1] getproperty(::Module, ::Symbol) at ./sysimg.jl:13
 [2] top-level scope at none:0
 [3] include at ./boot.jl:317 [inlined]
 [4] include_relative(::Module, ::String) at ./loading.jl:1038
 [5] include at ./sysimg.jl:29 [inlined]
 [6] include(::String) at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:3
 [7] top-level scope at none:0
 [8] include at ./boot.jl:317 [inlined]
 [9] include_relative(::Module, ::String) at ./loading.jl:1038
 [10] include at ./sysimg.jl:29 [inlined]
 [11] include(::String) at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:3
 [12] top-level scope at none:0
 [13] include at ./boot.jl:317 [inlined]
 [14] include_relative(::Module, ::String) at ./loading.jl:1038
 [15] include(::Module, ::String) at ./sysimg.jl:29
 [16] top-level scope at none:2
 [17] eval at ./boot.jl:319 [inlined]
 [18] eval(::Expr) at ./client.jl:399
 [19] top-level scope at ./none:3
in expression starting at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/displays/electron.jl:5
in expression starting at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/display.jl:124
in expression starting at /home/sebastian/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:34
ERROR: Failed to precompile PlotlyJS [f0f68f2c-4968-5e81-91da-67840de0976a] to /home/sebastian/.julia/compiled/v0.7/PlotlyJS/1r9Ld.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] macro expansion at ./logging.jl:313 [inlined]
 [3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1185
 [4] _require(::Base.PkgId) at ./logging.jl:311
 [5] require(::Base.PkgId) at ./loading.jl:852
 [6] macro expansion at ./logging.jl:311 [inlined]
 [7] require(::Module, ::Symbol) at ./loading.jl:834

@sglyon
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sglyon commented Sep 4, 2018

Ahh that's the problem.

The currently released version of PlotlyJS does not work with julia 0.7

But, the master branch does. To try it out run add PlotlyJS#master from the package prompt

We are waiting on some METADATA.jl pull requests to be merged before we can make a release of this package.

@pdimens
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pdimens commented Sep 4, 2018 •
edited
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I'm using Julia 1.0 (on Arch Linux 64bit if that matters) and the this is the output of status :

(v1.0) pkg> status
    Status `~/.julia/environments/v1.0/Project.toml`
  [7d9fca2a] Arpack v0.2.3
  [c52e3926] Atom v0.7.5
  [7e6ae17a] BioSequences v1.0.0
  [ad839575] Blink v0.8.0
  [a1bb12fb] Electron v0.2.0
  [28b8d3ca] GR v0.32.3
  [c91e804a] Gadfly v0.8.0
  [e5e0dc1b] Juno v0.5.2
  [a975b10e] Mux v0.5.3
  [4afe4657] Phylogenetics v0.0.2
  [58dd65bb] Plotly v0.1.1
  [a03496cd] PlotlyBase v0.2.1
  [f0f68f2c] PlotlyJS v0.10.3
  [91a5bcdd] Plots v0.20.1
  [d330b81b] PyPlot v2.6.2
  [ce6b1742] RDatasets v0.5.0
  [189a3867] Reexport v0.2.0
  [60ddc479] StatPlots v0.8.1
  [0f1e0344] WebIO v0.3.2

In addition, when adding the Master branch via add PlotlyJS#master , this is the output of using it

julia> using PlotlyJS
[ Info: Precompiling PlotlyJS [f0f68f2c-4968-5e81-91da-67840de0976a]
WARNING: could not import PlotlyBase.html_body into PlotlyJS
WARNING: could not import Base.quit into AtomShell

Further, when plotting using Plots with plotlyjs() as the backend, this is the error log in the Atom Juno IDE:

using Plots
using RDatasets

plotlyjs()
iris = dataset("datasets", "iris");
scatter(iris.SepalLength, iris.SepalWidth, group = iris.Species)

> 
UndefVarError: plotattributes not defined
in  at base/task.jl:85
in macro expansion at Pab0Z/src/eval.jl:89 
in hideprompt at Pab0Z/src/repl.jl:76
in #109 at Pab0Z/src/eval.jl:90 
in withpath at Pab0Z/src/eval.jl:46 
in withpath at 8CjYJ/src/utils.jl:30
in  at Pab0Z/src/eval.jl:91
in include_string at 8CjYJ/src/eval.jl:30
in top-level scope at base/none
in  at base/none
in #scatter#310 at Uz5AO/src/RecipesBase.jl:368
in  at base/none
in #plot#132 at MnXMC/src/plot.jl:57
in _plot! at MnXMC/src/plot.jl:171
in macro expansion at base/logging.jl:320 
in _process_seriesrecipe at MnXMC/src/pipeline.jl:404
in _add_the_series at MnXMC/src/pipeline.jl:381
in _series_added at MnXMC/src/backends/plotlyjs.jl:24
in plotly_series at MnXMC/src/backends/plotly.jl:576

@pdimens
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pdimens commented Sep 5, 2018 •
edited
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using the non-master branch, PlotlyJS is updated to v0.10.3 today and fails to compile with this error:

ERROR: LoadError: LoadError: UndefVarError: Associative not defined
Stacktrace:
 [1] top-level scope at /home/pdimens/.julia/packages/PlotlyJS/3eSkF/src/display.jl:101
 [2] top-level scope at /home/pdimens/.julia/packages/PlotlyJS/3eSkF/src/display.jl:90
 [3] include at ./boot.jl:317 [inlined]
 [4] include_relative(::Module, ::String) at ./loading.jl:1038
 [5] include at ./sysimg.jl:29 [inlined]
 [6] include(::String) at /home/pdimens/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:3
 [7] top-level scope at none:0
 [8] top-level scope at none:2
in expression starting at /home/pdimens/.julia/packages/PlotlyJS/3eSkF/src/display.jl:89
in expression starting at /home/pdimens/.julia/packages/PlotlyJS/3eSkF/src/PlotlyJS.jl:34

along with not having Reexport listed as a dependency

@swiesend
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swiesend commented Sep 5, 2018

checking out the master [f0f68f2c] PlotlyJS v0.10.3+ #master (https://github.com/sglyon/PlotlyJS.jl.git) helped. But unfortunately Plots.jl still can't handle it.

@sglyon
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sglyon commented Sep 6, 2018 •
edited
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Version 0.11.0 of this package has been released and is compatible with Julia 1.0

@sglyon sglyon closed this as completed Sep 6, 2018
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@sglyon @swiesend @pdimens