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LinearAlgebra.jl
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LinearAlgebra.jl
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# This file is a part of Julia. License is MIT: https://julialang.org/license
"""
Linear algebra module. Provides array arithmetic,
matrix factorizations and other linear algebra related
functionality.
"""
module LinearAlgebra
import Base: \, /, *, ^, +, -, ==
import Base: USE_BLAS64, abs, acos, acosh, acot, acoth, acsc, acsch, adjoint, asec, asech,
asin, asinh, atan, atanh, axes, big, broadcast, ceil, conj, convert, copy, copyto!, cos,
cosh, cot, coth, csc, csch, eltype, exp, fill!, floor, getindex, hcat,
getproperty, imag, inv, isapprox, isequal, isone, iszero, IndexStyle, kron, kron!, length, log, map, ndims,
oneunit, parent, power_by_squaring, print_matrix, promote_rule, real, round, sec, sech,
setindex!, show, similar, sin, sincos, sinh, size, sqrt,
strides, stride, tan, tanh, transpose, trunc, typed_hcat, vec
using Base: hvcat_fill, IndexLinear, promote_op, promote_typeof,
@propagate_inbounds, @pure, reduce, typed_vcat, require_one_based_indexing
using Base.Broadcast: Broadcasted, broadcasted
import Libdl
export
# Modules
LAPACK,
BLAS,
# Types
Adjoint,
Transpose,
SymTridiagonal,
Tridiagonal,
Bidiagonal,
Factorization,
BunchKaufman,
Cholesky,
CholeskyPivoted,
Eigen,
GeneralizedEigen,
GeneralizedSVD,
GeneralizedSchur,
Hessenberg,
LU,
LDLt,
QR,
QRPivoted,
LQ,
Schur,
SVD,
Hermitian,
Symmetric,
LowerTriangular,
UpperTriangular,
UnitLowerTriangular,
UnitUpperTriangular,
UpperHessenberg,
Diagonal,
UniformScaling,
# Functions
axpy!,
axpby!,
bunchkaufman,
bunchkaufman!,
cholesky,
cholesky!,
cond,
condskeel,
copyto!,
copy_transpose!,
cross,
adjoint,
adjoint!,
det,
diag,
diagind,
diagm,
dot,
eigen,
eigen!,
eigmax,
eigmin,
eigvals,
eigvals!,
eigvecs,
factorize,
givens,
hessenberg,
hessenberg!,
isdiag,
ishermitian,
isposdef,
isposdef!,
issuccess,
issymmetric,
istril,
istriu,
kron,
ldiv!,
ldlt!,
ldlt,
logabsdet,
logdet,
lowrankdowndate,
lowrankdowndate!,
lowrankupdate,
lowrankupdate!,
lu,
lu!,
lyap,
mul!,
lmul!,
rmul!,
norm,
normalize,
normalize!,
nullspace,
ordschur!,
ordschur,
pinv,
qr,
qr!,
lq,
lq!,
opnorm,
rank,
rdiv!,
reflect!,
rotate!,
schur,
schur!,
svd,
svd!,
svdvals!,
svdvals,
sylvester,
tr,
transpose,
transpose!,
tril,
triu,
tril!,
triu!,
# Operators
\,
/,
# Constants
I
const BlasFloat = Union{Float64,Float32,ComplexF64,ComplexF32}
const BlasReal = Union{Float64,Float32}
const BlasComplex = Union{ComplexF64,ComplexF32}
if USE_BLAS64
const BlasInt = Int64
else
const BlasInt = Int32
end
abstract type Algorithm end
struct DivideAndConquer <: Algorithm end
struct QRIteration <: Algorithm end
# Check that stride of matrix/vector is 1
# Writing like this to avoid splatting penalty when called with multiple arguments,
# see PR 16416
"""
stride1(A) -> Int
Return the distance between successive array elements
in dimension 1 in units of element size.
# Examples
```jldoctest
julia> A = [1,2,3,4]
4-element Vector{Int64}:
1
2
3
4
julia> LinearAlgebra.stride1(A)
1
julia> B = view(A, 2:2:4)
2-element view(::Vector{Int64}, 2:2:4) with eltype Int64:
2
4
julia> LinearAlgebra.stride1(B)
2
```
"""
stride1(x) = stride(x,1)
stride1(x::Array) = 1
stride1(x::DenseArray) = stride(x, 1)::Int
@inline chkstride1(A...) = _chkstride1(true, A...)
@noinline _chkstride1(ok::Bool) = ok || error("matrix does not have contiguous columns")
@inline _chkstride1(ok::Bool, A, B...) = _chkstride1(ok & (stride1(A) == 1), B...)
"""
LinearAlgebra.checksquare(A)
Check that a matrix is square, then return its common dimension.
For multiple arguments, return a vector.
# Examples
```jldoctest
julia> A = fill(1, (4,4)); B = fill(1, (5,5));
julia> LinearAlgebra.checksquare(A, B)
2-element Vector{Int64}:
4
5
```
"""
function checksquare(A)
m,n = size(A)
m == n || throw(DimensionMismatch("matrix is not square: dimensions are $(size(A))"))
m
end
function checksquare(A...)
sizes = Int[]
for a in A
size(a,1)==size(a,2) || throw(DimensionMismatch("matrix is not square: dimensions are $(size(a))"))
push!(sizes, size(a,1))
end
return sizes
end
function char_uplo(uplo::Symbol)
if uplo === :U
return 'U'
elseif uplo === :L
return 'L'
else
throw_uplo()
end
end
function sym_uplo(uplo::Char)
if uplo == 'U'
return :U
elseif uplo == 'L'
return :L
else
throw_uplo()
end
end
@noinline throw_uplo() = throw(ArgumentError("uplo argument must be either :U (upper) or :L (lower)"))
"""
ldiv!(Y, A, B) -> Y
Compute `A \\ B` in-place and store the result in `Y`, returning the result.
The argument `A` should *not* be a matrix. Rather, instead of matrices it should be a
factorization object (e.g. produced by [`factorize`](@ref) or [`cholesky`](@ref)).
The reason for this is that factorization itself is both expensive and typically allocates memory
(although it can also be done in-place via, e.g., [`lu!`](@ref)),
and performance-critical situations requiring `ldiv!` usually also require fine-grained
control over the factorization of `A`.
# Examples
```jldoctest
julia> A = [1 2.2 4; 3.1 0.2 3; 4 1 2];
julia> X = [1; 2.5; 3];
julia> Y = zero(X);
julia> ldiv!(Y, qr(A), X);
julia> Y
3-element Vector{Float64}:
0.7128099173553719
-0.051652892561983806
0.10020661157024781
julia> A\\X
3-element Vector{Float64}:
0.7128099173553719
-0.05165289256198342
0.1002066115702479
```
"""
ldiv!(Y, A, B)
"""
ldiv!(A, B)
Compute `A \\ B` in-place and overwriting `B` to store the result.
The argument `A` should *not* be a matrix. Rather, instead of matrices it should be a
factorization object (e.g. produced by [`factorize`](@ref) or [`cholesky`](@ref)).
The reason for this is that factorization itself is both expensive and typically allocates memory
(although it can also be done in-place via, e.g., [`lu!`](@ref)),
and performance-critical situations requiring `ldiv!` usually also require fine-grained
control over the factorization of `A`.
# Examples
```jldoctest
julia> A = [1 2.2 4; 3.1 0.2 3; 4 1 2];
julia> X = [1; 2.5; 3];
julia> Y = copy(X);
julia> ldiv!(qr(A), X);
julia> X
3-element Vector{Float64}:
0.7128099173553719
-0.051652892561983806
0.10020661157024781
julia> A\\Y
3-element Vector{Float64}:
0.7128099173553719
-0.05165289256198342
0.1002066115702479
```
"""
ldiv!(A, B)
"""
rdiv!(A, B)
Compute `A / B` in-place and overwriting `A` to store the result.
The argument `B` should *not* be a matrix. Rather, instead of matrices it should be a
factorization object (e.g. produced by [`factorize`](@ref) or [`cholesky`](@ref)).
The reason for this is that factorization itself is both expensive and typically allocates memory
(although it can also be done in-place via, e.g., [`lu!`](@ref)),
and performance-critical situations requiring `rdiv!` usually also require fine-grained
control over the factorization of `B`.
"""
rdiv!(A, B)
copy_oftype(A::AbstractArray{T}, ::Type{T}) where {T} = copy(A)
copy_oftype(A::AbstractArray{T,N}, ::Type{S}) where {T,N,S} = convert(AbstractArray{S,N}, A)
include("adjtrans.jl")
include("transpose.jl")
include("exceptions.jl")
include("generic.jl")
include("blas.jl")
include("matmul.jl")
include("lapack.jl")
include("dense.jl")
include("tridiag.jl")
include("triangular.jl")
include("factorization.jl")
include("qr.jl")
include("lq.jl")
include("eigen.jl")
include("svd.jl")
include("symmetric.jl")
include("cholesky.jl")
include("lu.jl")
include("bunchkaufman.jl")
include("diagonal.jl")
include("bidiag.jl")
include("uniformscaling.jl")
include("hessenberg.jl")
include("givens.jl")
include("special.jl")
include("bitarray.jl")
include("ldlt.jl")
include("schur.jl")
include("structuredbroadcast.jl")
include("deprecated.jl")
const ⋅ = dot
const × = cross
export ⋅, ×
"""
LinearAlgebra.peakflops(n::Integer=2000; parallel::Bool=false)
`peakflops` computes the peak flop rate of the computer by using double precision
[`gemm!`](@ref LinearAlgebra.BLAS.gemm!). By default, if no arguments are specified, it
multiplies a matrix of size `n x n`, where `n = 2000`. If the underlying BLAS is using
multiple threads, higher flop rates are realized. The number of BLAS threads can be set with
[`BLAS.set_num_threads(n)`](@ref).
If the keyword argument `parallel` is set to `true`, `peakflops` is run in parallel on all
the worker processors. The flop rate of the entire parallel computer is returned. When
running in parallel, only 1 BLAS thread is used. The argument `n` still refers to the size
of the problem that is solved on each processor.
!!! compat "Julia 1.1"
This function requires at least Julia 1.1. In Julia 1.0 it is available from
the standard library `InteractiveUtils`.
"""
function peakflops(n::Integer=2000; parallel::Bool=false)
a = fill(1.,100,100)
t = @elapsed a2 = a*a
a = fill(1.,n,n)
t = @elapsed a2 = a*a
@assert a2[1,1] == n
if parallel
let Distributed = Base.require(Base.PkgId(
Base.UUID((0x8ba89e20_285c_5b6f, 0x9357_94700520ee1b)), "Distributed"))
return sum(Distributed.pmap(peakflops, fill(n, Distributed.nworkers())))
end
else
return 2*Float64(n)^3 / t
end
end
function versioninfo(io::IO=stdout)
config = BLAS.get_config()
println(io, "BLAS: $(BLAS.libblastrampoline) ($(join(string.(config.build_flags), ", ")))")
for lib in config.loaded_libs
println(io, " --> $(lib.libname) ($(uppercase(string(lib.interface))))")
end
return nothing
end
function find_library_path(name)
shlib_ext = string(".", Libdl.dlext)
if !endswith(name, shlib_ext)
name_ext = string(name, shlib_ext)
end
# On windows, we look in `bin` and never in `lib`
@static if Sys.iswindows()
path = joinpath(Sys.BINDIR, name_ext)
isfile(path) && return path
else
# On other platforms, we check `lib/julia` first, and if that doesn't exist, `lib`.
path = joinpath(Sys.BINDIR, Base.LIBDIR, "julia", name_ext)
isfile(path) && return path
path = joinpath(Sys.BINDIR, Base.LIBDIR, name_ext)
isfile(path) && return path
end
# If we can't find it by absolute path, we'll try just passing this straight through to `dlopen()`
return name
end
function __init__()
try
libblas_path = find_library_path(Base.libblas_name)
liblapack_path = find_library_path(Base.liblapack_name)
BLAS.lbt_forward(libblas_path; clear=true)
if liblapack_path != libblas_path
BLAS.lbt_forward(liblapack_path)
end
BLAS.check()
Threads.resize_nthreads!(Abuf)
Threads.resize_nthreads!(Bbuf)
Threads.resize_nthreads!(Cbuf)
catch ex
Base.showerror_nostdio(ex, "WARNING: Error during initialization of module LinearAlgebra")
end
# register a hook to disable BLAS threading
Base.at_disable_library_threading(() -> BLAS.set_num_threads(1))
end
end # module LinearAlgebra