From 47b248c50dd70efcf6c8a69f1621dfc64e32975a Mon Sep 17 00:00:00 2001
From: Boris Kaus <61824822+boriskaus@users.noreply.github.com>
Date: Fri, 15 Mar 2024 07:29:59 +0100
Subject: [PATCH 1/9] Delete .zenodo.json

since it fails with zenodo
---
 .zenodo.json | 14 --------------
 1 file changed, 14 deletions(-)
 delete mode 100644 .zenodo.json

diff --git a/.zenodo.json b/.zenodo.json
deleted file mode 100644
index f08615a6..00000000
--- a/.zenodo.json
+++ /dev/null
@@ -1,14 +0,0 @@
-{
-    "description": "Julia interface for the parallel Lithosphere and Mantle Evolution Model (LaMEM)",
-    "license": "MIT",
-    "title": "LaMEM.jl",
-    "upload_type": "software",
-    "creators": [
-        {
-            "affiliation": "Institute of Geosciences, Johannes Gutenberg University Mainz, Germany",
-            "name": "Kaus, Boris",
-            "orcid": "0000-0002-0247-8660"
-        },
-    ],
-    "access_right": "open"
-}
\ No newline at end of file

From d47eaf6fdc2b8e8c5938c1d2c676bb1f7d31d27c Mon Sep 17 00:00:00 2001
From: Boris Kaus <61824822+boriskaus@users.noreply.github.com>
Date: Fri, 15 Mar 2024 07:31:45 +0100
Subject: [PATCH 2/9] Create CITATION.cff

---
 CITATION.cff | 9 +++++++++
 1 file changed, 9 insertions(+)
 create mode 100644 CITATION.cff

diff --git a/CITATION.cff b/CITATION.cff
new file mode 100644
index 00000000..0e640509
--- /dev/null
+++ b/CITATION.cff
@@ -0,0 +1,9 @@
+cff-version: 1.1.0
+message: "If you use this software, please cite it as below."
+authors:
+- family-names: Boris
+  given-names: Kaus
+orcid: https://orcid.org/0000-0002-0247-8660
+title:
+version: v0.3.0
+date-released: 2024-03-14

From c9b345dcafa839dd70d2cb25643fc2f2ea2d0fd6 Mon Sep 17 00:00:00 2001
From: Boris Kaus <61824822+boriskaus@users.noreply.github.com>
Date: Fri, 15 Mar 2024 07:36:11 +0100
Subject: [PATCH 3/9] Update CITATION.cff

---
 CITATION.cff | 22 ++++++++++++++--------
 1 file changed, 14 insertions(+), 8 deletions(-)

diff --git a/CITATION.cff b/CITATION.cff
index 0e640509..ac384121 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -1,9 +1,15 @@
-cff-version: 1.1.0
-message: "If you use this software, please cite it as below."
+cff-version: 1.2.0
+title: LaMEM.jl - julia interface to the Lithosphere and Mantle Evolution Model
+message: >-
+  If you use this software, please cite it using the
+  metadata from this file.
+type: software
 authors:
-- family-names: Boris
-  given-names: Kaus
-orcid: https://orcid.org/0000-0002-0247-8660
-title:
-version: v0.3.0
-date-released: 2024-03-14
+  - given-names: Boris
+    family-names: Kaus
+    orcid: 'https://orcid.org/0000-0002-0247-8660'
+    affiliation: Johannes Gutenberg University Mainz
+keywords:
+  - computational geodynamics
+license: MIT
+

From 6312c21974f54d5e2c9c8fada50a28bda5f314f5 Mon Sep 17 00:00:00 2001
From: Boris Kaus <61824822+boriskaus@users.noreply.github.com>
Date: Fri, 15 Mar 2024 07:39:51 +0100
Subject: [PATCH 4/9] Delete CITATION.cff

---
 CITATION.cff | 15 ---------------
 1 file changed, 15 deletions(-)
 delete mode 100644 CITATION.cff

diff --git a/CITATION.cff b/CITATION.cff
deleted file mode 100644
index ac384121..00000000
--- a/CITATION.cff
+++ /dev/null
@@ -1,15 +0,0 @@
-cff-version: 1.2.0
-title: LaMEM.jl - julia interface to the Lithosphere and Mantle Evolution Model
-message: >-
-  If you use this software, please cite it using the
-  metadata from this file.
-type: software
-authors:
-  - given-names: Boris
-    family-names: Kaus
-    orcid: 'https://orcid.org/0000-0002-0247-8660'
-    affiliation: Johannes Gutenberg University Mainz
-keywords:
-  - computational geodynamics
-license: MIT
-

From d65691503d9f3e6dbd06bc54c454a1a69f7d7124 Mon Sep 17 00:00:00 2001
From: Boris Kaus <61824822+boriskaus@users.noreply.github.com>
Date: Fri, 15 Mar 2024 07:42:56 +0100
Subject: [PATCH 5/9] Create CITATION.cff

---
 CITATION.cff | 16 ++++++++++++++++
 1 file changed, 16 insertions(+)
 create mode 100644 CITATION.cff

diff --git a/CITATION.cff b/CITATION.cff
new file mode 100644
index 00000000..226a1ded
--- /dev/null
+++ b/CITATION.cff
@@ -0,0 +1,16 @@
+cff-version: 1.2.0
+title: LaMEM
+message: >-
+  If you use this software, please cite it using the
+  metadata from this file.
+type: software
+authors:
+  - given-names: Boris
+    family-names: Kaus
+    email: kaus@uni-mainz.de
+    orcid: 'https://orcid.org/0000-0002-0247-8660'
+    affiliation: Johannes Gutenberg University Mainz
+keywords:
+  - computational geosciences
+  - high-performance computing
+license: MIT

From a776271798463343b51e1c0711ae6060bd1f93c5 Mon Sep 17 00:00:00 2001
From: Boris Kaus <61824822+boriskaus@users.noreply.github.com>
Date: Fri, 15 Mar 2024 07:46:22 +0100
Subject: [PATCH 6/9] Update CITATION.cff

---
 CITATION.cff | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CITATION.cff b/CITATION.cff
index 226a1ded..1042b6d2 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -13,4 +13,4 @@ authors:
 keywords:
   - computational geosciences
   - high-performance computing
-license: MIT
+license: GPL-3.0

From 30490a2e88c2e845b8fe9f98f831211403dffe56 Mon Sep 17 00:00:00 2001
From: Boris Kaus <61824822+boriskaus@users.noreply.github.com>
Date: Fri, 15 Mar 2024 07:47:09 +0100
Subject: [PATCH 7/9] Update CITATION.cff

---
 CITATION.cff | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CITATION.cff b/CITATION.cff
index 1042b6d2..4c16c536 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -1,5 +1,5 @@
 cff-version: 1.2.0
-title: LaMEM
+title: LaMEM.jl - Julia interface to the Lithosphere and Mantle Evolution Model
 message: >-
   If you use this software, please cite it using the
   metadata from this file.

From 6def7b7e2745c504b550922de403ff1529035112 Mon Sep 17 00:00:00 2001
From: Boris Kaus <61824822+boriskaus@users.noreply.github.com>
Date: Fri, 15 Mar 2024 07:50:17 +0100
Subject: [PATCH 8/9] bump version

---
 Project.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Project.toml b/Project.toml
index c87c2583..318ff10a 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,7 +1,7 @@
 name = "LaMEM"
 uuid = "2e889f3d-35ce-4a77-8ea2-858aecb630f7"
 authors = ["Boris Kaus <kaus@uni-mainz.de>"]
-version = "0.3.0"
+version = "0.3.1"
 
 [deps]
 DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"

From 41523514f8a9fa5995216260cef38776e4eb1f80 Mon Sep 17 00:00:00 2001
From: Boris Kaus <61824822+boriskaus@users.noreply.github.com>
Date: Fri, 15 Mar 2024 10:56:51 +0100
Subject: [PATCH 9/9] explicitly point out that we have a user guide

for those who overlooked the blue button
---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 044d58c7..e4ff604e 100644
--- a/README.md
+++ b/README.md
@@ -3,7 +3,7 @@
 [![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://juliageodynamics.github.io/LaMEM.jl/dev/)
 [![DOI](https://zenodo.org/badge/531427568.svg)](https://zenodo.org/doi/10.5281/zenodo.10211627)
 
-This is the Julia interface to [LaMEM](https://github.com/UniMainzGeo/LaMEM/)) (Lithosphere and Mantle Evolution Model), which is the easiest way to install LaMEM on any system. It allows you to start a (parallel) LaMEM simulation, and read back the output files to julia for further processing.
+This is the Julia interface to [LaMEM](https://github.com/UniMainzGeo/LaMEM/)) (Lithosphere and Mantle Evolution Model), which is the easiest way to install LaMEM on any system. It allows you to start a (parallel) LaMEM simulation, and read back the output files to julia for further processing. Below we give some brief steps in how to use it. More examples can be found in tyhe [user guide](https://juliageodynamics.github.io/LaMEM.jl/dev/).
 
 ### 1. Installation
 Go to the package manager & install it with:
@@ -160,4 +160,4 @@ We rely on the following packages:
 
 
 ### 6. Funding
-Funding for this julia interface has been provided by the European Research Council (ERC CoG [MAGMA # 771143](https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwi8rN_Iy7SEAxX8SfEDHfd3AzkQFnoECB4QAQ&url=https%3A%2F%2Fcordis.europa.eu%2Fproject%2Fid%2F771143&usg=AOvVaw1G1LUjR9t9KtX6pcE2ozr2&opi=89978449)), and by the EuroHPC-JU Center of Excellence [CHEESE-2P](https://cheese2.eu).
\ No newline at end of file
+Funding for this julia interface has been provided by the European Research Council (ERC CoG [MAGMA # 771143](https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwi8rN_Iy7SEAxX8SfEDHfd3AzkQFnoECB4QAQ&url=https%3A%2F%2Fcordis.europa.eu%2Fproject%2Fid%2F771143&usg=AOvVaw1G1LUjR9t9KtX6pcE2ozr2&opi=89978449)), and by the EuroHPC-JU Center of Excellence [CHEESE-2P](https://cheese2.eu).