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1.5.0-DEV-6a9a92683d.log
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1.5.0-DEV-6a9a92683d.log
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Julia Version 1.5.0-DEV.299
Commit 6a9a92683d (2020-02-20 07:47 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed IniFile ────────────── v0.5.0
Installed CodecZlib ──────────── v0.6.0
Installed BenchmarkTools ─────── v0.4.3
Installed Conda ──────────────── v1.4.1
Installed ColorTypes ─────────── v0.9.1
Installed PyCall ─────────────── v1.91.3
Installed ForwardDiff ────────── v0.10.9
Installed QHull ──────────────── v0.2.0
Installed BinaryProvider ─────── v0.5.8
Installed DiffRules ──────────── v1.0.1
Installed RecipesBase ────────── v0.7.0
Installed JSON ───────────────── v0.21.0
Installed OrderedCollections ─── v1.1.0
Installed NaNMath ────────────── v0.3.3
Installed GeometryTypes ──────── v0.7.7
Installed TranscodingStreams ─── v0.9.5
Installed JuMP ───────────────── v0.21.1
Installed MutableArithmetics ─── v0.2.3
Installed OpenSpecFun_jll ────── v0.5.3+1
Installed VersionParsing ─────── v1.2.0
Installed CodecBzip2 ─────────── v0.6.0
Installed FixedPointNumbers ──── v0.7.1
Installed StaticArrays ───────── v0.12.1
Installed HTTP ───────────────── v0.8.8
Installed DiffResults ────────── v1.0.2
Installed SpecialFunctions ───── v0.10.0
Installed DataStructures ─────── v0.17.9
Installed MathOptInterface ───── v0.9.10
Installed Parsers ────────────── v0.3.11
Installed JSONSchema ─────────── v0.2.0
Installed ParameterJuMP ──────── v0.2.0
Installed Calculus ───────────── v0.5.1
Installed CommonSubexpressions ─ v0.2.0
Installed MbedTLS ────────────── v0.7.0
Installed MacroTools ─────────── v0.5.4
Installed Polyhedra ──────────── v0.6.0
#=#=# ######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
[a8468747] + QHull v0.2.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[6e4b80f9] + BenchmarkTools v0.4.3
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[523fee87] + CodecBzip2 v0.6.0
[944b1d66] + CodecZlib v0.6.0
[3da002f7] + ColorTypes v0.9.1
[bbf7d656] + CommonSubexpressions v0.2.0
[8f4d0f93] + Conda v1.4.1
[864edb3b] + DataStructures v0.17.9
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[53c48c17] + FixedPointNumbers v0.7.1
[f6369f11] + ForwardDiff v0.10.9
[4d00f742] + GeometryTypes v0.7.7
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[682c06a0] + JSON v0.21.0
[7d188eb4] + JSONSchema v0.2.0
[4076af6c] + JuMP v0.21.1
[1914dd2f] + MacroTools v0.5.4
[b8f27783] + MathOptInterface v0.9.10
[739be429] + MbedTLS v0.7.0
[d8a4904e] + MutableArithmetics v0.2.3
[77ba4419] + NaNMath v0.3.3
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[774612a8] + ParameterJuMP v0.2.0
[69de0a69] + Parsers v0.3.11
[67491407] + Polyhedra v0.6.0
[438e738f] + PyCall v1.91.3
[a8468747] + QHull v0.2.0
[3cdcf5f2] + RecipesBase v0.7.0
[276daf66] + SpecialFunctions v0.10.0
[90137ffa] + StaticArrays v0.12.1
[3bb67fe8] + TranscodingStreams v0.9.5
[81def892] + VersionParsing v1.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib ─→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building Conda ─────→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall ────→ `~/.julia/packages/PyCall/kAhnQ/deps/build.log`
Building CodecBzip2 → `~/.julia/packages/CodecBzip2/T5yr7/deps/build.log`
Building MbedTLS ───→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Testing QHull
Status `/tmp/jl_0WiFHR/Manifest.toml`
[6e4b80f9] BenchmarkTools v0.4.3
[b99e7846] BinaryProvider v0.5.8
[49dc2e85] Calculus v0.5.1
[523fee87] CodecBzip2 v0.6.0
[944b1d66] CodecZlib v0.6.0
[3da002f7] ColorTypes v0.9.1
[861a8166] Combinatorics v1.0.0
[bbf7d656] CommonSubexpressions v0.2.0
[8f4d0f93] Conda v1.4.1
[864edb3b] DataStructures v0.17.9
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[53c48c17] FixedPointNumbers v0.7.1
[f6369f11] ForwardDiff v0.10.9
[60bf3e95] GLPK v0.12.1
[4d00f742] GeometryTypes v0.7.7
[cd3eb016] HTTP v0.8.8
[83e8ac13] IniFile v0.5.0
[682c06a0] JSON v0.21.0
[7d188eb4] JSONSchema v0.2.0
[4076af6c] JuMP v0.21.1
[1914dd2f] MacroTools v0.5.4
[b8f27783] MathOptInterface v0.9.10
[739be429] MbedTLS v0.7.0
[d8a4904e] MutableArithmetics v0.2.3
[77ba4419] NaNMath v0.3.3
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[774612a8] ParameterJuMP v0.2.0
[69de0a69] Parsers v0.3.11
[67491407] Polyhedra v0.6.0
[f27b6e38] Polynomials v0.6.0
[438e738f] PyCall v1.91.3
[a8468747] QHull v0.2.0
[3cdcf5f2] RecipesBase v0.7.0
[276daf66] SpecialFunctions v0.10.0
[90137ffa] StaticArrays v0.12.1
[3bb67fe8] TranscodingStreams v0.9.5
[81def892] VersionParsing v1.2.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package scipy.spatial could not be found by pyimport. Usually this means
that you did not install scipy.spatial in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the scipy.spatial module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the scipy.spatial module, you can use `pyimport_conda("scipy.spatial", PKG)`,
where PKG is the Anaconda package the contains the module scipy.spatial,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'scipy'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/kAhnQ/src/PyCall.jl:536
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/kAhnQ/src/PyCall.jl:694
[3] pyimport_conda at /home/pkgeval/.julia/packages/PyCall/kAhnQ/src/PyCall.jl:693 [inlined]
[4] __init__() at /home/pkgeval/.julia/packages/QHull/ck7jQ/src/QHull.jl:16
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[6] _require_from_serialized(::String) at ./loading.jl:748
[7] _require(::Base.PkgId) at ./loading.jl:1039
[8] require(::Base.PkgId) at ./loading.jl:927
[9] require(::Module, ::Symbol) at ./loading.jl:922
[10] include(::String) at ./client.jl:441
[11] top-level scope at none:6
during initialization of module QHull
in expression starting at /home/pkgeval/.julia/packages/QHull/ck7jQ/test/runtests.jl:2
ERROR: Package QHull errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1503
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13